Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_010803 Vanilla planifolia HOM05D008067 ORTHO05D010226 7.1e-38 160.2 88 100.0
MD02G1048100 Malus domestica HOM05D008067 ORTHO05D010226 5.7e-11 70.9 46 69.6
Prupe.7G230000 Prunus persica HOM05D008067 ORTHO05D010226 2.8e-10 68.6 68 55.9
TAR624G0725 Trochodendron aralioides HOM05D008067 ORTHO05D010226 2.8e-10 68.6 51 64.7
Nn8g39208 Nelumbo nucifera HOM05D008067 ORTHO05D010226 6.3e-10 67.4 53 64.2
RcHm_v2.0_Chr2g0090561 Rosa chinensis HOM05D008067 ORTHO05D010226 1.1e-09 66.6 76 57.9
Thecc.09G111500 Theobroma cacao HOM05D008067 ORTHO05D010226 1.1e-09 66.6 69 56.5
CSS0009961 Camellia sinensis var. sinensis HOM05D008067 ORTHO05D010226 2.4e-09 65.5 75 50.7
CSS0037112 Camellia sinensis var. sinensis HOM05D008067 ORTHO05D010226 2.4e-09 65.5 75 50.7
CsaV3_2G002290 Cucumis sativus L. HOM05D008067 ORTHO05D010226 2.4e-09 65.5 35 82.9
FAN23G0784 Fragaria x ananassa HOM05D008067 ORTHO05D010226 2.4e-09 65.5 71 56.3
Sed0012648 Sechium edule HOM05D008067 ORTHO05D010226 2.4e-09 65.5 39 76.9
FvH4_1g04950 Fragaria vesca HOM05D008067 ORTHO05D010226 3.1e-09 65.1 80 55.0
Cfa003263 Carpinus fangiana HOM05D008067 ORTHO05D010226 4.1e-09 64.7 81 49.4
COL.COLO4_34910 Corchorus olitorius HOM05D008067 ORTHO05D010226 4.1e-09 64.7 69 55.1
Aqoxy7G01692 Aquilegia oxysepala HOM05D008067 ORTHO05D010226 5.3e-09 64.3 56 66.1
Haze_25708 Corylus avellana HOM05D008067 ORTHO05D010226 5.3e-09 64.3 64 56.2
FAN28G1234 Fragaria x ananassa HOM05D008067 ORTHO05D010226 1.2e-08 63.2 71 53.5
QL02p085507 Quercus lobata HOM05D008067 ORTHO05D010226 1.2e-08 63.2 69 52.2
MELO3C004555.2 Cucumis melo HOM05D008067 ORTHO05D010226 2.0e-08 62.4 55 60.0
DCAR_028716 Daucus carota HOM05D008067 ORTHO05D010226 2.0e-08 62.4 54 59.3
Sed0011788 Sechium edule HOM05D008067 ORTHO05D010226 3.4e-08 61.6 60 56.7
Gohir.A07G006600 Gossypium hirsutum HOM05D008067 ORTHO05D010226 4.5e-08 61.2 80 48.8
Solyc12g007060.1 Solanum lycopersicum HOM05D008067 ORTHO05D010226 4.5e-08 61.2 58 55.2
Sopen12g003050 Solanum pennellii HOM05D008067 ORTHO05D010226 4.5e-08 61.2 58 55.2
Ah.09g227900 Amaranthus hybridus HOM05D008067 ORTHO05D010226 5.9e-08 60.8 44 68.2
Gohir.A06G061900 Gossypium hirsutum HOM05D008067 ORTHO05D010226 5.9e-08 60.8 62 58.1
Gohir.D06G060201 Gossypium hirsutum HOM05D008067 ORTHO05D010226 5.9e-08 60.8 69 56.5
Gohir.D07G005400 Gossypium hirsutum HOM05D008067 ORTHO05D010226 7.7e-08 60.5 77 50.6
Gorai.001G004900 Gossypium raimondii HOM05D008067 ORTHO05D010226 7.7e-08 60.5 77 50.6
Nitab4.5_0003537g0010 Nicotiana tabacum HOM05D008067 ORTHO05D010226 7.7e-08 60.5 61 52.5
PGSC0003DMG400000315 Solanum tuberosum HOM05D008067 ORTHO05D010226 1.0e-07 60.1 58 55.2
Nn2g11761 Nelumbo nucifera HOM05D008067 ORTHO05D010226 1.3e-07 59.7 54 51.9
Gorai.010G070100 Gossypium raimondii HOM05D008067 ORTHO05D010226 1.7e-07 59.3 82 51.2
Lj2g0006280 Lotus japonicus HOM05D008067 ORTHO05D010226 2.2e-07 58.9 60 53.3
SHI02746 Sapria himalayana HOM05D008067 ORTHO05D010226 2.2e-07 58.9 33 72.7
RhsimUnG0085400 Rhododendron simsii HOM05D008067 ORTHO05D010226 3.8e-07 58.2 69 47.8
ClCG11G002490 Citrullus lanatus HOM05D008067 ORTHO05D010226 5.0e-07 57.8 84 48.8
EL10Ac8g18505 Beta vulgaris HOM05D008067 ORTHO05D010226 6.5e-07 57.4 67 53.7
Medtr8g083450 Medicago truncatula HOM05D008067 ORTHO05D010226 1.1e-06 56.6 64 56.2
Glyma.07G086900 Glycine max HOM05D008067 ORTHO05D010226 1.4e-06 56.2 43 65.1
Glyma.09G190000 Glycine max HOM05D008067 ORTHO05D010226 1.4e-06 56.2 43 65.1
CsaV3_1G030530 Cucumis sativus L. HOM05D008067 ORTHO05D010226 1.9e-06 55.8 86 46.5
Lalb_Chr22g0352831 Lupinus albus HOM05D008067 ORTHO05D010226 1.9e-06 55.8 40 65.0
Lsat_1_v5_gn_8_95580 Lactuca sativa HOM05D008067 ORTHO05D010226 2.5e-06 55.5 55 54.5
Manes.03G019700 Manihot esculenta HOM05D008067 ORTHO05D010226 3.2e-06 55.1 67 50.7
Peaxi162Scf00546g00115 Petunia axillaris HOM05D008067 ORTHO05D010226 3.2e-06 55.1 57 56.1
Peaxi162Scf00560g00114 Petunia axillaris HOM05D008067 ORTHO05D010226 3.2e-06 55.1 76 42.1
Ciclev10010044m.g Citrus clementina HOM05D008067 ORTHO05D010226 4.2e-06 54.7 88 46.6
Glyma.05G231500 Glycine max HOM05D008067 ORTHO05D010226 5.5e-06 54.3 50 56.0
Potri.018G079200 Populus trichocarpa HOM05D008067 ORTHO05D010226 7.2e-06 53.9 47 61.7
Phvul.002G313700 Phaseolus vulgaris HOM05D008067 ORTHO05D010226 9.4e-06 53.5 40 65.0


User provided reference genes

Program Settings