Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_010759 Vanilla planifolia HOM05D004960 ORTHO05D004696 2.4e-157 558.9 301 100.0
MBI14_g30701_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 2.6e-31 140.2 292 31.8
ATR0580G174 Amborella trichopoda HOM05D004960 ORTHO05D004696 7.1e-29 132.1 297 31.6
TAR625G0177 Trochodendron aralioides HOM05D004960 ORTHO05D004696 6.0e-28 129.0 290 31.4
TAR626G1729 Trochodendron aralioides HOM05D004960 ORTHO05D004696 1.0e-27 128.3 293 30.7
Nn2g12577 Nelumbo nucifera HOM05D004960 ORTHO05D004696 9.6e-26 121.7 322 29.2
ATR0580G065 Amborella trichopoda HOM05D004960 ORTHO05D004696 1.3e-25 121.3 301 30.2
MBI14_g30694_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 1.6e-25 120.9 286 30.1
MBI14_g30692_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 3.6e-25 119.8 285 31.2
MBI14_g30696_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 8.1e-25 118.6 292 30.8
TAR626G0702 Trochodendron aralioides HOM05D004960 ORTHO05D004696 3.1e-24 116.7 287 29.6
Cfa013540 Carpinus fangiana HOM05D004960 ORTHO05D004696 5.3e-24 115.9 289 29.1
Hma1.2p1_0921F.1_g236760 Hydrangea macrophylla HOM05D004960 ORTHO05D004696 5.3e-24 115.9 315 27.9
Hma1.2p1_0921F.1_g236792 Hydrangea macrophylla HOM05D004960 ORTHO05D004696 5.3e-24 115.9 315 27.9
COL.COLO4_16060 Corchorus olitorius HOM05D004960 ORTHO05D004696 9.0e-24 115.2 307 30.6
Haze_10109 Corylus avellana HOM05D004960 ORTHO05D004696 2.6e-23 113.6 268 29.9
MBI14_g30695_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 9.9e-23 111.7 295 30.5
Nn8g40270 Nelumbo nucifera HOM05D004960 ORTHO05D004696 1.3e-22 111.3 294 28.6
Dinv41300 Davidia involucrata HOM05D004960 ORTHO05D004696 1.4e-21 107.8 289 28.7
QL02p095902 Quercus lobata HOM05D004960 ORTHO05D004696 1.4e-21 107.8 312 29.5
Dinv43330 Davidia involucrata HOM05D004960 ORTHO05D004696 1.9e-21 107.5 236 30.5
TWI63G1126 Tripterygium wilfordii HOM05D004960 ORTHO05D004696 3.2e-21 106.7 277 26.7
Ciclev10008947m.g Citrus clementina HOM05D004960 ORTHO05D004696 4.2e-21 106.3 292 30.5
Dinv42772 Davidia involucrata HOM05D004960 ORTHO05D004696 4.2e-21 106.3 211 34.1
TAR626G1223 Trochodendron aralioides HOM05D004960 ORTHO05D004696 4.2e-21 106.3 292 28.8
CSS0015847 Camellia sinensis var. sinensis HOM05D004960 ORTHO05D004696 2.1e-20 104.0 278 25.9
Aqoxy7G03208 Aquilegia oxysepala HOM05D004960 ORTHO05D004696 2.7e-20 103.6 281 28.1
TWI34G0908 Tripterygium wilfordii HOM05D004960 ORTHO05D004696 6.0e-20 102.4 241 29.0
Oeu024903.1 Olea europaea HOM05D004960 ORTHO05D004696 2.3e-19 100.5 292 26.7
Cc06_g13870 Coffea canephora HOM05D004960 ORTHO05D004696 3.9e-19 99.8 303 24.1
TWI32G0132 Tripterygium wilfordii HOM05D004960 ORTHO05D004696 5.1e-19 99.4 294 27.9
Ciclev10008957m.g Citrus clementina HOM05D004960 ORTHO05D004696 6.7e-19 99.0 286 30.1
Thecc.09G162700 Theobroma cacao HOM05D004960 ORTHO05D004696 6.7e-19 99.0 301 26.6
Lsat_1_v5_gn_7_52700 Lactuca sativa HOM05D004960 ORTHO05D004696 1.5e-18 97.8 290 29.3
Eucgr.C00202 Eucalyptus grandis HOM05D004960 ORTHO05D004696 1.9e-18 97.4 275 27.6
TAR383G0345 Trochodendron aralioides HOM05D004960 ORTHO05D004696 1.9e-18 97.4 289 26.0
Aqoxy7G03204 Aquilegia oxysepala HOM05D004960 ORTHO05D004696 2.5e-18 97.1 303 24.1
Rhsim01G0010200 Rhododendron simsii HOM05D004960 ORTHO05D004696 3.3e-18 96.7 284 27.5
Aqoxy7G03205 Aquilegia oxysepala HOM05D004960 ORTHO05D004696 5.6e-18 95.9 282 29.8
TAR383G0614 Trochodendron aralioides HOM05D004960 ORTHO05D004696 2.1e-17 94.0 286 25.5
TAR383G0876 Trochodendron aralioides HOM05D004960 ORTHO05D004696 2.1e-17 94.0 286 26.2
Atru.chr7.532 Acer truncatum HOM05D004960 ORTHO05D004696 3.7e-17 93.2 293 29.4
Cpa.g.c29666.2 Carica papaya HOM05D004960 ORTHO05D004696 4.8e-17 92.8 305 30.2
Nn1g04315 Nelumbo nucifera HOM05D004960 ORTHO05D004696 1.1e-16 91.7 219 28.8
HanXRQChr03g0068481 Helianthus annuus HOM05D004960 ORTHO05D004696 3.1e-16 90.1 314 25.8
CSS0034998 Camellia sinensis var. sinensis HOM05D004960 ORTHO05D004696 4.0e-16 89.7 290 26.6
Carub.0003s3296 Capsella rubella HOM05D004960 ORTHO05D004696 4.0e-16 89.7 294 29.3
Oeu043380.1 Olea europaea HOM05D004960 ORTHO05D004696 5.3e-16 89.4 308 30.2
Actinidia35989 Actinidia chinensis HOM05D004960 ORTHO05D004696 1.5e-15 87.8 291 26.1
Manes.13G066000 Manihot esculenta HOM05D004960 ORTHO05D004696 1.5e-15 87.8 287 26.5
Solyc07g006420.1 Solanum lycopersicum HOM05D004960 ORTHO05D004696 1.5e-15 87.8 290 24.1
CSS0049948 Camellia sinensis var. sinensis HOM05D004960 ORTHO05D004696 4.5e-15 86.3 290 26.6
RcHm_v2.0_Chr4g0404711 Rosa chinensis HOM05D004960 ORTHO05D004696 4.5e-15 86.3 283 27.9
Oeu037992.1 Olea europaea HOM05D004960 ORTHO05D004696 5.8e-15 85.9 295 28.8
Prupe.1G095900 Prunus persica HOM05D004960 ORTHO05D004696 9.9e-15 85.1 292 28.1
Actinidia38650 Actinidia chinensis HOM05D004960 ORTHO05D004696 1.3e-14 84.7 282 28.0
Manes.14G147200 Manihot esculenta HOM05D004960 ORTHO05D004696 2.2e-14 84.0 296 25.7
Migut.K00270 Erythranthe guttata HOM05D004960 ORTHO05D004696 2.9e-14 83.6 221 33.9
Migut.J01407 Erythranthe guttata HOM05D004960 ORTHO05D004696 3.8e-14 83.2 289 22.8
MD16G1263500 Malus domestica HOM05D004960 ORTHO05D004696 3.8e-14 83.2 293 26.6
BcaC04g21483 Brassica carinata HOM05D004960 ORTHO05D004696 4.9e-14 82.8 305 27.5
C09p31280 Brassica napus HOM05D004960 ORTHO05D004696 4.9e-14 82.8 305 27.5
CSS0022952 Camellia sinensis var. sinensis HOM05D012567 ORTHO05D004696 6.4e-14 82.4 296 26.7
BcaB03g16662 Brassica carinata HOM05D004960 ORTHO05D004696 8.4e-14 82.0 305 27.2
Rhsim01G0010300 Rhododendron simsii HOM05D004960 ORTHO05D004696 1.1e-13 81.6 291 25.4
CSS0038346 Camellia sinensis var. sinensis HOM05D012567 ORTHO05D004696 1.4e-13 81.3 296 26.4
Hma1.2p1_0921F.1_g236770 Hydrangea macrophylla HOM05D004960 ORTHO05D004696 1.4e-13 81.3 270 25.6
Hma1.2p1_0921F.1_g236794 Hydrangea macrophylla HOM05D004960 ORTHO05D004696 1.4e-13 81.3 270 25.6
RcHm_v2.0_Chr5g0006011 Rosa chinensis HOM05D000001 ORTHO05D009942 1.9e-13 80.9 293 29.0
HanXRQChr03g0074171 Helianthus annuus HOM05D012567 ORTHO05D004696 5.5e-13 79.3 287 27.2
CSS0018327 Camellia sinensis var. sinensis HOM05D004960 ORTHO05D004696 7.1e-13 79.0 312 24.7
Dinv41299 Davidia involucrata HOM05D004960 ORTHO05D004696 2.1e-12 77.4 285 26.7
ECA240G0411 Erigeron canadensis HOM05D004960 ORTHO05D004696 2.7e-12 77.0 279 26.9
Thecc.09G163000 Theobroma cacao HOM05D004960 ORTHO05D004696 2.7e-12 77.0 239 25.9
COL.COLO4_16058 Corchorus olitorius HOM05D007179 ORTHO05D009124 3.5e-12 76.6 275 28.4
CsaV3_1G004210 Cucumis sativus L. HOM05D000001 ORTHO05D009942 3.5e-12 76.6 292 29.1
BcaC04g22889 Brassica carinata HOM05D004960 ORTHO05D004696 6.0e-12 75.9 302 25.5
C09p14170 Brassica napus HOM05D004960 ORTHO05D004696 6.0e-12 75.9 302 25.5
HanXRQChr03g0074111 Helianthus annuus HOM05D012567 ORTHO05D004696 6.0e-12 75.9 287 26.5
HanXRQChr03g0074151 Helianthus annuus HOM05D012567 ORTHO05D004696 6.0e-12 75.9 287 26.5
MBI14_g30697_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 7.9e-12 75.5 288 27.8
BraA07t27990Z Brassica rapa HOM05D004960 ORTHO05D004696 1.0e-11 75.1 285 28.4
HanXRQChr03g0068521 Helianthus annuus HOM05D004960 ORTHO05D004696 1.0e-11 75.1 240 24.2
Dinv41298 Davidia involucrata HOM05D004960 ORTHO05D004696 1.3e-11 74.7 101 38.6
Eucgr.J03153 Eucalyptus grandis HOM05D004960 ORTHO05D004696 1.8e-11 74.3 287 25.1
BolC9t55984H Brassica oleracea HOM05D004960 ORTHO05D004696 2.3e-11 73.9 305 27.5
CSS0019658 Camellia sinensis var. sinensis HOM05D004960 ORTHO05D004696 3.0e-11 73.6 293 26.6
Lsat_1_v5_gn_7_52621 Lactuca sativa HOM05D012567 ORTHO05D004696 3.0e-11 73.6 288 25.3
MELO3C004032.2 Cucumis melo HOM05D000001 ORTHO05D009942 3.9e-11 73.2 293 29.0
MBI14_g30691_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 3.9e-11 73.2 273 27.8
RcHm_v2.0_Chr4g0404721 Rosa chinensis HOM05D004960 ORTHO05D004696 3.9e-11 73.2 236 24.2
BolC9t54315H Brassica oleracea HOM05D004960 ORTHO05D004696 5.1e-11 72.8 302 25.2
Actinidia38795 Actinidia chinensis HOM05D004960 ORTHO05D004696 6.7e-11 72.4 283 25.4
Cpa.g.sc75.10 Carica papaya HOM05D004960 ORTHO05D004696 1.9e-10 70.9 263 28.1
Lsat_1_v5_gn_8_65701 Lactuca sativa HOM05D004960 ORTHO05D004696 1.9e-10 70.9 286 23.1
Lj6g0018090 Lotus japonicus HOM05D000001 ORTHO05D009942 1.9e-10 70.9 285 24.9
PGSC0003DMG400034810 Solanum tuberosum HOM05D004960 ORTHO05D004696 2.5e-10 70.5 199 27.6
C04p38300 Brassica napus HOM05D004960 ORTHO05D004696 3.3e-10 70.1 298 26.8
Migut.K00271 Erythranthe guttata HOM05D004960 ORTHO05D004696 4.3e-10 69.7 298 27.2
Oeu037995.1 Olea europaea HOM05D004960 ORTHO05D004696 4.3e-10 69.7 290 28.3
TAR626G0745 Trochodendron aralioides HOM05D001062 ORTHO05D000884 5.6e-10 69.3 293 25.9
FvH4_3g13180 Fragaria vesca HOM05D000001 ORTHO05D009942 7.4e-10 68.9 291 28.2
Lj4g0010912 Lotus japonicus HOM05D000001 ORTHO05D009942 7.4e-10 68.9 300 25.7
FAN11G1677 Fragaria x ananassa HOM05D000001 ORTHO05D009942 9.6e-10 68.6 291 28.5
SEGI_26894 Sequoiadendron giganteum HOM05D001062 ORTHO05D000884 9.6e-10 68.6 293 24.6
TAR626G1419 Trochodendron aralioides HOM05D004960 ORTHO05D004696 1.3e-09 68.2 302 25.5
MD13G1261300 Malus domestica HOM05D000001 ORTHO05D009942 2.8e-09 67.0 295 27.5
Zm00001eb388210 Zea mays HOM05D020224 ORTHO05D023040 2.8e-09 67.0 279 25.4
Aqoxy7G03206 Aquilegia oxysepala HOM05D004960 ORTHO05D004696 3.7e-09 66.6 193 24.4
Lsat_1_v5_gn_7_52640 Lactuca sativa HOM05D012567 ORTHO05D004696 3.7e-09 66.6 288 26.4
Lsat_1_v5_gn_7_52661 Lactuca sativa HOM05D012567 ORTHO05D004696 3.7e-09 66.6 291 25.8
Prupe.1G096000 Prunus persica HOM05D000001 ORTHO05D009942 3.7e-09 66.6 295 26.8
Aa31LG2G13040 Aethionema arabicum HOM05D000001 ORTHO05D009942 4.8e-09 66.2 313 23.3
CANSAT01G1218 Cannabis sativa HOM05D000001 ORTHO05D009942 4.8e-09 66.2 290 24.8
Cc06_g13860 Coffea canephora HOM05D004960 ORTHO05D004696 4.8e-09 66.2 284 22.9
HPP92_003071 Vanilla planifolia HOM05D004960 ORTHO05D004696 4.8e-09 66.2 250 26.4
FAN25G3648 Fragaria x ananassa HOM05D000001 ORTHO05D009942 6.2e-09 65.9 297 26.9
Migut.J01430 Erythranthe guttata HOM05D004960 ORTHO05D004696 8.2e-09 65.5 296 27.7
PSO063G2425 Papaver somniferum HOM05D004960 ORTHO05D004696 8.2e-09 65.5 271 25.8
ECA240G1251 Erigeron canadensis HOM05D012567 ORTHO05D004696 1.1e-08 65.1 217 26.7
Eucgr.F04013 Eucalyptus grandis HOM05D004960 ORTHO05D004696 1.1e-08 65.1 286 26.2
HanXRQChr03g0074181 Helianthus annuus HOM05D012567 ORTHO05D004696 1.1e-08 65.1 229 26.6
SGA_v2.0_scaffold69G23316 Striga asiatica HOM05D004960 ORTHO05D004696 1.1e-08 65.1 285 26.0
BcaC02g09087 Brassica carinata HOM05D004960 ORTHO05D004696 1.4e-08 64.7 297 25.9
BraA04t16256Z Brassica rapa HOM05D004960 ORTHO05D004696 1.8e-08 64.3 297 24.9
FAN16G0931 Fragaria x ananassa HOM05D000001 ORTHO05D009942 1.8e-08 64.3 293 27.3
HanXRQChr09g0244301 Helianthus annuus HOM05D012567 ORTHO05D004696 1.8e-08 64.3 291 25.8
SGA_v2.0_scaffold175G39354 Striga asiatica HOM05D001062 ORTHO05D000884 1.8e-08 64.3 296 26.4
A07p01900 Brassica napus HOM05D004960 ORTHO05D004696 2.4e-08 63.9 268 27.2
MBI14_g30699_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 2.4e-08 63.9 295 26.8
TAR626G0474 Trochodendron aralioides HOM05D004960 ORTHO05D004696 2.4e-08 63.9 129 29.5
BcaNung00139 Brassica carinata HOM05D000001 ORTHO05D009942 3.1e-08 63.5 291 26.1
C07p04050 Brassica napus HOM05D004960 ORTHO05D004696 3.1e-08 63.5 249 26.1
SGA_v2.0_scaffold298G47690 Striga asiatica HOM05D001062 ORTHO05D000884 3.1e-08 63.5 285 24.9
HanXRQChr16g0510881 Helianthus annuus HOM05D001062 ORTHO05D000884 4.0e-08 63.2 293 23.2
Atru.chr4.912 Acer truncatum HOM05D001062 ORTHO05D000884 5.3e-08 62.8 294 25.9
PGR084G0002 Punica granatum HOM05D004960 ORTHO05D004696 6.9e-08 62.4 311 27.0
PGR142G0218 Punica granatum HOM05D004960 ORTHO05D004696 6.9e-08 62.4 311 27.0
TAR624G0548 Trochodendron aralioides HOM05D001062 ORTHO05D000884 1.2e-07 61.6 297 25.9
Atru.chr12.164 Acer truncatum HOM05D004960 ORTHO05D004696 1.5e-07 61.2 211 25.6
HanXRQChr06g0167601 Helianthus annuus HOM05D012567 ORTHO05D004696 1.5e-07 61.2 301 24.6
Lj9P729T26 Lonicera japonica HOM05D000001 ORTHO05D009942 1.5e-07 61.2 222 28.4
Sp7g17230 Schrenkiella parvula HOM05D000001 ORTHO05D009942 1.5e-07 61.2 221 27.6
TAR626G1398 Trochodendron aralioides HOM05D004960 ORTHO05D004696 1.5e-07 61.2 215 25.6
Cpa.g.sc42.160 Carica papaya HOM05D001062 ORTHO05D000884 2.0e-07 60.8 245 24.5
Glyma.17G068100 Glycine max HOM05D000001 ORTHO05D009942 2.0e-07 60.8 285 26.0
ATR0580G034 Amborella trichopoda HOM05D000001 ORTHO05D009942 2.6e-07 60.5 279 25.4
QL02p095851 Quercus lobata HOM05D000001 ORTHO05D009942 2.6e-07 60.5 279 26.5
Thhalv10025772m.g Eutrema salsugineum HOM05D000001 ORTHO05D009942 3.4e-07 60.1 280 25.0
PSO675G0698 Papaver somniferum HOM05D001062 ORTHO05D000884 3.4e-07 60.1 293 23.2
PSO675G1304 Papaver somniferum HOM05D001062 ORTHO05D000884 3.4e-07 60.1 293 23.2
Pp3c5_10650 Physcomitrium patens HOM05D001062 ORTHO05D000884 3.4e-07 60.1 292 23.3
BolC7t40796H Brassica oleracea HOM05D004960 ORTHO05D004696 4.5e-07 59.7 226 26.1
Cc06_g13850 Coffea canephora HOM05D012567 ORTHO05D004696 4.5e-07 59.7 300 25.0
AT4G16850 Arabidopsis thaliana HOM05D000001 ORTHO05D009942 5.8e-07 59.3 284 26.1
Atru.chr7.517 Acer truncatum HOM05D000001 ORTHO05D009942 7.6e-07 58.9 309 25.9
AL7G37780 Arabidopsis lyrata HOM05D000001 ORTHO05D009942 1.0e-06 58.5 285 25.6
Migut.M01989 Erythranthe guttata HOM05D001062 ORTHO05D000884 1.0e-06 58.5 283 24.0
Prupe.1G095700 Prunus persica HOM05D004960 ORTHO05D004696 1.0e-06 58.5 283 23.7
Prupe.4G113700 Prunus persica HOM05D001062 ORTHO05D000884 1.0e-06 58.5 283 24.7
BcaC09g50430 Brassica carinata HOM05D000001 ORTHO05D009942 1.3e-06 58.2 287 25.4
C01p25510 Brassica napus HOM05D000001 ORTHO05D009942 1.3e-06 58.2 287 25.4
BolC1t02502H Brassica oleracea HOM05D000001 ORTHO05D000003 1.3e-06 58.2 287 25.4
BraA01t01964Z Brassica rapa HOM05D000001 ORTHO05D009942 1.3e-06 58.2 282 25.5
MBI14_g08066_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D009942 1.3e-06 58.2 288 27.4
Potri.018G097900 Populus trichocarpa HOM05D000001 ORTHO05D009942 1.3e-06 58.2 279 24.4
A01p20340 Brassica napus HOM05D000001 ORTHO05D009942 1.7e-06 57.8 289 24.9
Medtr4g129330 Medicago truncatula HOM05D000001 ORTHO05D009942 1.7e-06 57.8 283 26.1
Nn5g28536 Nelumbo nucifera HOM05D001062 ORTHO05D000884 1.7e-06 57.8 291 22.3
Zm00001eb388220 Zea mays HOM05D029094 ORTHO05D049756 1.7e-06 57.8 278 23.4
Ca_21187_v3 Cicer arietinum L. HOM05D000001 ORTHO05D009942 2.2e-06 57.4 152 29.6
Ah.08g212850 Amaranthus hybridus HOM05D001062 ORTHO05D000884 2.9e-06 57.0 299 23.7
Carub.0007s2447 Capsella rubella HOM05D000001 ORTHO05D009942 2.9e-06 57.0 304 23.7
THA.LOC104814356 Tarenaya hassleriana HOM05D001062 ORTHO05D000884 2.9e-06 57.0 316 24.4
TWI12G0641 Tripterygium wilfordii HOM05D004960 ORTHO05D004696 3.8e-06 56.6 290 26.2
Aqoxy7G03202 Aquilegia oxysepala HOM05D004960 ORTHO05D004696 4.9e-06 56.2 307 19.5
Glyma.13G092300 Glycine max HOM05D000001 ORTHO05D009942 4.9e-06 56.2 283 25.8
Pp3c6_23080 Physcomitrium patens HOM05D001062 ORTHO05D000884 4.9e-06 56.2 297 24.2
Glyma.04G242400 Glycine max HOM05D001062 ORTHO05D000884 6.5e-06 55.8 301 23.9
Dinv09059 Davidia involucrata HOM05D001062 ORTHO05D000884 8.4e-06 55.5 283 24.4


User provided reference genes

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