Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_010755 Vanilla planifolia HOM05D000029 ORTHO05D002586 2.0e-22 108.2 55 100.0
HPP92_010756 Vanilla planifolia HOM05D000029 ORTHO05D002586 3.0e-18 94.4 54 83.3
HPP92_010757 Vanilla planifolia HOM05D000029 ORTHO05D002586 6.7e-18 93.2 54 81.5
EL10Ac8g19461 Beta vulgaris HOM05D000029 ORTHO05D002586 3.2e-12 74.3 54 61.1
EL10Ac4g10016 Beta vulgaris HOM05D000029 ORTHO05D002586 4.6e-11 70.5 54 59.3
AUR62033037 Chenopodium quinoa HOM05D000029 ORTHO05D002586 4.6e-11 70.5 54 59.3
AUR62040755 Chenopodium quinoa HOM05D000029 ORTHO05D002586 7.9e-11 69.7 54 59.3
Sc02g0006120 Simmondsia chinensis HOM05D000029 ORTHO05D002586 7.9e-11 69.7 54 59.3
Sabra08G0005300 Salix brachista HOM05D000029 ORTHO05D002586 1.0e-10 69.3 54 57.4
TAR559G0001 Trochodendron aralioides HOM05D000029 ORTHO05D002586 1.3e-10 68.9 54 55.6
TAR625G0481 Trochodendron aralioides HOM05D000029 ORTHO05D002586 1.3e-10 68.9 54 55.6
TAR625G0533 Trochodendron aralioides HOM05D000029 ORTHO05D002586 1.8e-10 68.6 54 57.4
Ah.14g085770 Amaranthus hybridus HOM05D000029 ORTHO05D002586 3.0e-10 67.8 54 53.7
Aqoxy7G03163 Aquilegia oxysepala HOM05D000109 ORTHO05D002586 3.0e-10 67.8 54 59.3
MBI16_g00669_MAGBIO Magnolia biondii HOM05D000029 ORTHO05D002586 3.0e-10 67.8 54 59.3
Potri.008G009300 Populus trichocarpa HOM05D000029 ORTHO05D002586 3.0e-10 67.8 54 55.6
Hund21921 Selenicereus undatus HOM05D000029 ORTHO05D002586 3.9e-10 67.4 54 59.3
Aqoxy6G02042 Aquilegia oxysepala HOM05D000029 ORTHO05D002586 5.1e-10 67.0 54 59.3
Prupe.3G167900 Prunus persica HOM05D000029 ORTHO05D002586 6.7e-10 66.6 54 55.6
Hund21922 Selenicereus undatus HOM05D000029 ORTHO05D002586 8.7e-10 66.2 54 57.4
DCAR_026433 Daucus carota HOM05D001342 ORTHO05D002586 1.5e-09 65.5 54 57.4
Hma1.2p1_1104F.1_g257410 Hydrangea macrophylla HOM05D000029 ORTHO05D002586 1.5e-09 65.5 54 61.1
Lj5C25T13 Lonicera japonica HOM05D000029 ORTHO05D002586 1.5e-09 65.5 54 57.4
Oeu049651.1 Olea europaea HOM05D001909 ORTHO05D007079 1.9e-09 65.1 54 57.4
Potri.008G007600 Populus trichocarpa HOM05D000029 ORTHO05D002586 2.5e-09 64.7 54 55.6
Atru.chr1.2777 Acer truncatum HOM05D000029 ORTHO05D002586 3.3e-09 64.3 54 51.9
Cfa021397 Carpinus fangiana HOM05D000029 ORTHO05D002586 4.3e-09 63.9 54 51.9
Haze_18878 Corylus avellana HOM05D000029 ORTHO05D002586 4.3e-09 63.9 54 51.9
Os08g0446200 Oryza sativa ssp. japonica HOM05D000029 ORTHO05D002586 4.3e-09 63.9 54 53.7
Solyc03g123860.4 Solanum lycopersicum HOM05D000029 ORTHO05D002586 7.4e-09 63.2 54 55.6
Sopen03g041600 Solanum pennellii HOM05D000029 ORTHO05D002586 7.4e-09 63.2 54 55.6
SalBow6G1033 Salvia bowleyana HOM05D000029 ORTHO05D002586 9.7e-09 62.8 54 51.9
Eucgr.F04005 Eucalyptus grandis HOM05D000029 ORTHO05D002586 1.3e-08 62.4 54 50.0
Manes.04G099100 Manihot esculenta HOM05D000029 ORTHO05D002586 1.3e-08 62.4 54 51.9
Manes.04G099300 Manihot esculenta HOM05D000029 ORTHO05D002586 1.3e-08 62.4 54 51.9
A06p13620 Brassica napus HOM05D000029 ORTHO05D002586 1.6e-08 62.0 54 50.0
BraA06t24513Z Brassica rapa HOM05D000029 ORTHO05D002586 1.6e-08 62.0 54 50.0
ClCG07G014170 Citrullus lanatus HOM05D000029 ORTHO05D002586 1.6e-08 62.0 54 48.1
PGSC0003DMG401009161 Solanum tuberosum HOM05D000029 ORTHO05D002586 1.6e-08 62.0 54 55.6
Ah.04g159190 Amaranthus hybridus HOM05D000029 ORTHO05D002586 2.2e-08 61.6 54 51.9
arahy.Tifrunner.gnm1.ann1.UUXJ7Q Arachis hypogaea HOM05D000029 ORTHO05D002586 2.2e-08 61.6 54 51.9
BcaB07g33995 Brassica carinata HOM05D000029 ORTHO05D002586 2.2e-08 61.6 54 50.0
BcaB07g34028 Brassica carinata HOM05D000029 ORTHO05D002586 2.2e-08 61.6 54 50.0
BcaC05g25693 Brassica carinata HOM05D000029 ORTHO05D002586 2.2e-08 61.6 54 50.0
C05p16140 Brassica napus HOM05D000029 ORTHO05D002586 2.2e-08 61.6 54 50.0
BolC5t30314H Brassica oleracea HOM05D000029 ORTHO05D002586 2.2e-08 61.6 54 50.0
CAN.G790.32 Capsicum annuum HOM05D000029 ORTHO05D002586 2.2e-08 61.6 54 55.6
Lj3g0017714 Lotus japonicus HOM05D000029 ORTHO05D002586 2.2e-08 61.6 54 48.1
Nitab4.5_0001691g0080 Nicotiana tabacum HOM05D000029 ORTHO05D002586 2.2e-08 61.6 54 55.6
QL10p030477 Quercus lobata HOM05D000029 ORTHO05D002586 2.2e-08 61.6 54 51.9
BcaB07g34001 Brassica carinata HOM05D000029 ORTHO05D002586 2.8e-08 61.2 54 50.0
BcaB07g34029 Brassica carinata HOM05D000029 ORTHO05D002586 2.8e-08 61.2 54 50.0
Dinv37802 Davidia involucrata HOM05D000029 ORTHO05D002586 2.8e-08 61.2 54 51.9
Migut.I01152 Erythranthe guttata HOM05D000029 ORTHO05D002586 2.8e-08 61.2 53 52.8
Lalb_Chr24g0393671 Lupinus albus HOM05D000029 ORTHO05D002586 2.8e-08 61.2 54 51.9
Rhsim08G0247000 Rhododendron simsii HOM05D000029 ORTHO05D002586 2.8e-08 61.2 54 53.7
vmacro18700 Vaccinium macrocarpon HOM05D000029 ORTHO05D002586 2.8e-08 61.2 54 53.7
ATR0580G151 Amborella trichopoda HOM05D000029 ORTHO05D002586 3.7e-08 60.8 54 48.1
HanXRQChr04g0098181 Helianthus annuus HOM05D000029 ORTHO05D002586 3.7e-08 60.8 54 50.0
Nn2g12617 Nelumbo nucifera HOM05D000029 ORTHO05D002586 3.7e-08 60.8 55 56.4
Phvul.005G184700 Phaseolus vulgaris HOM05D000029 ORTHO05D002586 3.7e-08 60.8 54 50.0
AUR62006627 Chenopodium quinoa HOM05D000029 ORTHO05D002586 4.8e-08 60.5 54 51.9
HanXRQChr09g0277381 Helianthus annuus HOM05D000029 ORTHO05D002586 4.8e-08 60.5 54 50.0
Manes.16G045200 Manihot esculenta HOM05D000029 ORTHO05D002586 4.8e-08 60.5 54 51.9
VMungo1080G0163 Vigna mungo HOM05D000029 ORTHO05D002586 4.8e-08 60.5 54 46.3
GSVIVG01016126001 Vitis vinifera HOM05D000029 ORTHO05D002586 4.8e-08 60.5 54 51.9
Zm00001eb040920 Zea mays HOM05D000029 ORTHO05D002586 4.8e-08 60.5 53 50.9
PSO063G2705 Papaver somniferum HOM05D000029 ORTHO05D002586 6.3e-08 60.1 54 51.9
CANSAT01G2271 Cannabis sativa HOM05D000029 ORTHO05D002586 8.2e-08 59.7 54 51.9
CAN.G790.29 Capsicum annuum HOM05D000029 ORTHO05D002586 1.1e-07 59.3 54 53.7
Cc04_g00430 Coffea canephora HOM05D000029 ORTHO05D002586 1.1e-07 59.3 54 53.7
ECA232G4700 Erigeron canadensis HOM05D000029 ORTHO05D002586 1.1e-07 59.3 54 48.1
Aa31LG7G2580 Aethionema arabicum HOM05D000029 ORTHO05D002586 1.4e-07 58.9 54 44.4
CSS0039856 Camellia sinensis var. sinensis HOM05D000029 ORTHO05D002586 1.4e-07 58.9 54 53.7
Gohir.D10G007500 Gossypium hirsutum HOM05D000029 ORTHO05D002586 1.4e-07 58.9 54 50.0
Medtr2g105680 Medicago truncatula HOM05D000029 ORTHO05D002586 1.4e-07 58.9 54 46.3
Nn8g40364 Nelumbo nucifera HOM05D000029 ORTHO05D002586 1.4e-07 58.9 55 50.9
Prupe.3G167800 Prunus persica HOM05D000029 ORTHO05D002586 1.4e-07 58.9 54 50.0
Hund21923 Selenicereus undatus HOM05D000029 ORTHO05D002586 1.4e-07 58.9 54 51.9
FvH4_6g37430 Fragaria vesca HOM05D000029 ORTHO05D002586 1.8e-07 58.5 54 46.3
FAN05G1949 Fragaria x ananassa HOM05D000029 ORTHO05D002586 1.8e-07 58.5 54 46.3
FAN14G3707 Fragaria x ananassa HOM05D000029 ORTHO05D002586 1.8e-07 58.5 54 46.3
Gorai.011G008200 Gossypium raimondii HOM05D000029 ORTHO05D002586 1.8e-07 58.5 54 50.0
Phvul.007G137800 Phaseolus vulgaris HOM05D000029 ORTHO05D002586 1.8e-07 58.5 54 46.3
MD17G1144300 Malus domestica HOM05D000029 ORTHO05D002586 2.4e-07 58.2 54 46.3
CARHR018360 Cardamine hirsuta HOM05D000029 ORTHO05D002586 3.1e-07 57.8 54 50.0
Eucgr.F04007 Eucalyptus grandis HOM05D000029 ORTHO05D002586 3.1e-07 57.8 54 46.3
FAN02G2390 Fragaria x ananassa HOM05D000029 ORTHO05D002586 3.1e-07 57.8 54 46.3
Lsat_1_v5_gn_4_88821 Lactuca sativa HOM05D000029 ORTHO05D002586 3.1e-07 57.8 54 44.4
Psat5g046760 Pisum sativum HOM05D000029 ORTHO05D002586 3.1e-07 57.8 54 48.1
Sp1g15830 Schrenkiella parvula HOM05D000029 ORTHO05D002586 3.1e-07 57.8 54 48.1
Sed0005839 Sechium edule HOM05D000029 ORTHO05D002586 3.1e-07 57.8 54 46.3
CsaV3_3G031210 Cucumis sativus L. HOM05D000029 ORTHO05D002586 4.1e-07 57.4 54 48.1
CsaV3_UNG227850 Cucumis sativus L. HOM05D000029 ORTHO05D002586 4.1e-07 57.4 54 48.1
Gohir.A10G007600 Gossypium hirsutum HOM05D000029 ORTHO05D002586 4.1e-07 57.4 54 48.1
AT1G17750 Arabidopsis thaliana HOM05D000029 ORTHO05D002586 5.3e-07 57.0 54 46.3
Carub.0001s1748 Capsella rubella HOM05D000029 ORTHO05D002586 5.3e-07 57.0 54 46.3
Nitab4.5_0002885g0070 Nicotiana tabacum HOM05D000029 ORTHO05D002586 5.3e-07 57.0 54 51.9
PSO017G5321 Papaver somniferum HOM05D000029 ORTHO05D002586 5.3e-07 57.0 54 51.9
PSO478G5170 Papaver somniferum HOM05D000029 ORTHO05D002586 5.3e-07 57.0 54 51.9
Sed0009650 Sechium edule HOM05D000029 ORTHO05D002586 5.3e-07 57.0 54 48.1
TWI12G0471 Tripterygium wilfordii HOM05D000029 ORTHO05D002586 5.3e-07 57.0 54 48.1
Duzib235G1298 Durio zibethinus HOM05D000029 ORTHO05D002586 6.9e-07 56.6 54 48.1
Psat5g299600 Pisum sativum HOM05D000029 ORTHO05D002586 6.9e-07 56.6 54 44.4
VMungo0720G1393 Vigna mungo HOM05D000029 ORTHO05D002586 6.9e-07 56.6 54 44.4
CARHR066050 Cardamine hirsuta HOM05D000029 ORTHO05D002586 9.0e-07 56.2 54 46.3
Glyma.10G195700 Glycine max HOM05D000029 ORTHO05D002586 9.0e-07 56.2 54 42.6
Aa31LG4G11260 Aethionema arabicum HOM05D000029 ORTHO05D002586 1.2e-06 55.8 53 49.1
AL1G30100 Arabidopsis lyrata HOM05D000029 ORTHO05D002586 1.2e-06 55.8 54 46.3
BcaC08g45675 Brassica carinata HOM05D000029 ORTHO05D002586 1.2e-06 55.8 54 46.3
A07p29980 Brassica napus HOM05D000029 ORTHO05D002586 1.2e-06 55.8 54 46.3
C06p34330 Brassica napus HOM05D000029 ORTHO05D002586 1.2e-06 55.8 54 46.3
BolC6t38549H Brassica oleracea HOM05D000029 ORTHO05D002586 1.2e-06 55.8 54 46.3
BraA07t30636Z Brassica rapa HOM05D000029 ORTHO05D002586 1.2e-06 55.8 54 46.3
FAN05G3853 Fragaria x ananassa HOM05D000029 ORTHO05D002586 1.2e-06 55.8 54 44.4
Lsat_1_v5_gn_4_88801 Lactuca sativa HOM05D000029 ORTHO05D002586 1.2e-06 55.8 54 46.3
RcHm_v2.0_Chr2g0150241 Rosa chinensis HOM05D000029 ORTHO05D002586 1.2e-06 55.8 54 44.4
Sp5g28040 Schrenkiella parvula HOM05D000029 ORTHO05D002586 1.2e-06 55.8 53 47.2
AL2G32830 Arabidopsis lyrata HOM05D000029 ORTHO05D002586 1.5e-06 55.5 53 47.2
Carub.0002s1985 Capsella rubella HOM05D000029 ORTHO05D002586 1.5e-06 55.5 53 47.2
AUR62000279 Chenopodium quinoa HOM05D000029 ORTHO05D002586 1.5e-06 55.5 54 46.3
Ca_00985_v3 Cicer arietinum L. HOM05D000029 ORTHO05D002586 1.5e-06 55.5 54 42.6
Ca_00999_v3 Cicer arietinum L. HOM05D000029 ORTHO05D002586 1.5e-06 55.5 54 42.6
MELO3C025794.2 Cucumis melo HOM05D000029 ORTHO05D002586 1.5e-06 55.5 54 44.4
TPR.G31787 Trifolium pratense HOM05D000029 ORTHO05D002586 1.5e-06 55.5 54 40.7
BcaC08g47355 Brassica carinata HOM05D000029 ORTHO05D002586 2.0e-06 55.1 55 47.3
Ca_10429_v3 Cicer arietinum L. HOM05D007060 ORTHO05D009087 2.0e-06 55.1 54 42.6
Thhalv10018036m.g Eutrema salsugineum HOM05D000029 ORTHO05D002586 2.0e-06 55.1 53 45.3
Actinidia33819 Actinidia chinensis HOM05D000029 ORTHO05D002586 2.6e-06 54.7 54 50.0
MD09G1158300 Malus domestica HOM05D000029 ORTHO05D002586 2.6e-06 54.7 54 48.1
Aqoxy6G02372 Aquilegia oxysepala HOM05D000029 ORTHO05D002586 3.4e-06 54.3 54 46.3
AT1G73080 Arabidopsis thaliana HOM05D000029 ORTHO05D002586 3.4e-06 54.3 53 47.2
MSTRG.22507 Avicennia marina HOM05D000029 ORTHO05D002586 3.4e-06 54.3 54 44.4
BcaC08g47016 Brassica carinata HOM05D000029 ORTHO05D002586 3.4e-06 54.3 54 46.3
MELO3C025795.2 Cucumis melo HOM05D000029 ORTHO05D002586 3.4e-06 54.3 54 42.6
C06p49410 Brassica napus HOM05D000029 ORTHO05D002586 4.5e-06 53.9 55 45.5
BolC6t39976H Brassica oleracea HOM05D000029 ORTHO05D002586 4.5e-06 53.9 55 45.5
FvH4_6g37420 Fragaria vesca HOM05D000029 ORTHO05D002586 4.5e-06 53.9 54 42.6
FAN09G1043 Fragaria x ananassa HOM05D000029 ORTHO05D002586 4.5e-06 53.9 54 42.6
FAN14G2150 Fragaria x ananassa HOM05D000029 ORTHO05D002586 4.5e-06 53.9 54 42.6
Psat6g171960 Pisum sativum HOM05D000029 ORTHO05D002586 4.5e-06 53.9 54 40.7
TPR.G37759 Trifolium pratense HOM05D000029 ORTHO05D002586 4.5e-06 53.9 54 42.6
Aa31LG4G3350 Aethionema arabicum HOM05D000029 ORTHO05D002586 5.9e-06 53.5 53 45.3
ECA247G0406 Erigeron canadensis HOM05D000029 ORTHO05D002586 5.9e-06 53.5 55 47.3
Ciclev10024756m.g Citrus clementina HOM05D000029 ORTHO05D002586 7.7e-06 53.1 54 48.1
Glyma.15G001500 Glycine max HOM05D000029 ORTHO05D002586 7.7e-06 53.1 54 40.7
CANSAT01G1511 Cannabis sativa HOM05D000029 ORTHO05D002586 1.0e-05 52.8 54 44.4
SEGI_00741 Sequoiadendron giganteum HOM05D000029 ORTHO05D002586 1.0e-05 52.8 54 46.3
TWI23G0691 Tripterygium wilfordii HOM05D000029 ORTHO05D002586 1.0e-05 52.8 54 44.4


User provided reference genes

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