Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_010708 Vanilla planifolia HOM05D003675 ORTHO05D004318 2.2e-148 528.9 258 100.0
Os08g0323700 Oryza sativa ssp. japonica HOM05D003675 ORTHO05D004318 5.2e-121 438.0 259 81.9
HPP92_010716 Vanilla planifolia HOM05D003675 ORTHO05D004318 8.8e-121 437.2 256 86.3
Aqoxy3G00253 Aquilegia oxysepala HOM05D003675 ORTHO05D004318 1.7e-119 433.0 256 80.5
Nn8g39842 Nelumbo nucifera HOM05D003675 ORTHO05D004318 2.8e-119 432.2 256 80.5
MBI18_g11285_MAGBIO Magnolia biondii HOM05D003675 ORTHO05D004318 4.1e-118 428.3 256 81.2
HPP92_017213 Vanilla planifolia HOM05D003675 ORTHO05D004318 1.2e-117 426.8 255 79.6
GSVIVG01021607001 Vitis vinifera HOM05D003675 ORTHO05D004318 1.2e-117 426.8 256 79.3
PSO675G7364 Papaver somniferum HOM05D003675 ORTHO05D004318 2.0e-117 426.0 257 78.2
CSS0048327 Camellia sinensis var. sinensis HOM05D003675 ORTHO05D004318 2.7e-117 425.6 256 78.9
PSO675G2215 Papaver somniferum HOM05D003675 ORTHO05D004318 2.7e-117 425.6 257 78.2
TAR627G0374 Trochodendron aralioides HOM05D003675 ORTHO05D004318 2.7e-117 425.6 256 78.9
Thecc.02G011900 Theobroma cacao HOM05D003675 ORTHO05D004318 4.5e-117 424.9 256 78.5
TWI53G0160 Tripterygium wilfordii HOM05D003675 ORTHO05D004318 4.5e-117 424.9 256 80.1
Manes.06G060500 Manihot esculenta HOM05D003675 ORTHO05D004318 5.9e-117 424.5 256 79.3
Zm00001eb286030 Zea mays HOM05D003675 ORTHO05D004318 7.7e-117 424.1 259 79.5
Actinidia07469 Actinidia chinensis HOM05D003675 ORTHO05D004318 1.0e-116 423.7 256 77.7
Rhsim13G0119800 Rhododendron simsii HOM05D003675 ORTHO05D004318 1.0e-116 423.7 256 78.9
Duzib132G0867 Durio zibethinus HOM05D003675 ORTHO05D004318 1.7e-116 422.9 256 78.1
Ciclev10014154m.g Citrus clementina HOM05D003675 ORTHO05D004318 3.8e-116 421.8 256 77.7
QL05p053600 Quercus lobata HOM05D003675 ORTHO05D004318 3.8e-116 421.8 256 77.7
Dinv15908 Davidia involucrata HOM05D003675 ORTHO05D004318 5.0e-116 421.4 256 78.9
Dinv32189 Davidia involucrata HOM05D003675 ORTHO05D004318 8.6e-116 420.6 256 78.1
Gohir.D12G044700 Gossypium hirsutum HOM05D003675 ORTHO05D004318 8.6e-116 420.6 256 76.6
Gorai.008G047100 Gossypium raimondii HOM05D003675 ORTHO05D004318 8.6e-116 420.6 256 76.6
Lj1C1164G14 Lonicera japonica HOM05D003675 ORTHO05D004318 8.6e-116 420.6 256 77.7
vmacro03400 Vaccinium macrocarpon HOM05D003675 ORTHO05D004318 8.6e-116 420.6 256 78.5
Haze_05761 Corylus avellana HOM05D003675 ORTHO05D004318 1.1e-115 420.2 256 78.1
Duzib052G0595 Durio zibethinus HOM05D003675 ORTHO05D004318 1.5e-115 419.9 256 77.7
Duzib248G0664 Durio zibethinus HOM05D003675 ORTHO05D004318 1.5e-115 419.9 256 77.3
RcHm_v2.0_Chr5g0015611 Rosa chinensis HOM05D003675 ORTHO05D004318 2.5e-115 419.1 256 77.3
Cfa000847 Carpinus fangiana HOM05D003675 ORTHO05D004318 3.3e-115 418.7 256 78.1
Eucgr.D00196 Eucalyptus grandis HOM05D003675 ORTHO05D004318 4.2e-115 418.3 256 78.1
PGR083G0730 Punica granatum HOM05D003675 ORTHO05D004318 4.2e-115 418.3 258 78.7
Gohir.A12G045566 Gossypium hirsutum HOM05D003675 ORTHO05D004318 5.5e-115 417.9 256 76.2
Zm00001eb347460 Zea mays HOM05D003675 ORTHO05D004318 7.2e-115 417.5 259 79.5
COL.COLO4_17678 Corchorus olitorius HOM05D003675 ORTHO05D004318 9.5e-115 417.2 256 77.7
Nn2g15671 Nelumbo nucifera HOM05D003675 ORTHO05D004318 9.5e-115 417.2 256 76.2
TWI73G0281 Tripterygium wilfordii HOM05D003675 ORTHO05D004318 9.5e-115 417.2 256 78.9
CiPaw.10G086400 Carya illinoinensis HOM05D003675 ORTHO05D004318 1.2e-114 416.8 256 77.7
Lj6g0000180 Lotus japonicus HOM05D003675 ORTHO05D004318 1.6e-114 416.4 256 77.7
MD05G1275000 Malus domestica HOM05D003675 ORTHO05D004318 1.6e-114 416.4 256 76.6
MD10G1254500 Malus domestica HOM05D003675 ORTHO05D004318 1.6e-114 416.4 256 77.7
CiPaw.09G116500 Carya illinoinensis HOM05D003675 ORTHO05D004318 2.1e-114 416.0 256 77.7
Atru.chr10.917 Acer truncatum HOM05D003675 ORTHO05D004318 2.8e-114 415.6 256 77.0
Atru.chr10.925 Acer truncatum HOM05D003675 ORTHO05D004318 2.8e-114 415.6 256 77.0
FAN16G2870 Fragaria x ananassa HOM05D003675 ORTHO05D004318 3.6e-114 415.2 256 77.3
CAN.G1058.33 Capsicum annuum HOM05D003675 ORTHO05D004318 4.7e-114 414.8 256 77.7
Glyma.09G085300 Glycine max HOM05D003675 ORTHO05D004318 6.1e-114 414.5 259 76.8
Gohir.D02G238100 Gossypium hirsutum HOM05D003675 ORTHO05D004318 6.1e-114 414.5 256 77.0
Gohir.D02G239100 Gossypium hirsutum HOM05D003675 ORTHO05D004318 6.1e-114 414.5 256 77.0
Glyma.15G193400 Glycine max HOM05D003675 ORTHO05D004318 8.0e-114 414.1 258 77.1
FAN25G0162 Fragaria x ananassa HOM05D003675 ORTHO05D004318 1.0e-113 413.7 256 77.0
Lj2A328G59 Lonicera japonica HOM05D003675 ORTHO05D004318 1.4e-113 413.3 257 77.0
DCAR_003868 Daucus carota HOM05D003675 ORTHO05D004318 1.8e-113 412.9 256 76.2
FvH4_3g09910 Fragaria vesca HOM05D003675 ORTHO05D004318 3.0e-113 412.1 256 76.2
FAN11G0336 Fragaria x ananassa HOM05D003675 ORTHO05D004318 3.0e-113 412.1 256 76.2
Migut.H01338 Erythranthe guttata HOM05D003675 ORTHO05D004318 4.0e-113 411.8 256 77.3
HanXRQChr08g0209981 Helianthus annuus HOM05D003675 ORTHO05D004318 5.2e-113 411.4 260 75.8
Solyc02g021620.3 Solanum lycopersicum HOM05D003675 ORTHO05D004318 5.2e-113 411.4 256 77.3
Sopen02g006170 Solanum pennellii HOM05D003675 ORTHO05D004318 5.2e-113 411.4 256 77.3
FAN21G3951 Fragaria x ananassa HOM05D003675 ORTHO05D004318 6.8e-113 411.0 256 76.2
CANSAT35G1002 Cannabis sativa HOM05D003675 ORTHO05D004318 8.9e-113 410.6 256 76.2
Gohir.A03G216500 Gossypium hirsutum HOM05D003675 ORTHO05D004318 8.9e-113 410.6 256 76.6
Gorai.005G266600 Gossypium raimondii HOM05D003675 ORTHO05D004318 8.9e-113 410.6 256 76.2
Medtr2g048510 Medicago truncatula HOM05D003675 ORTHO05D004318 1.2e-112 410.2 256 76.2
Cpa.g.sc17.78 Carica papaya HOM05D003675 ORTHO05D004318 1.5e-112 409.8 256 77.0
Cc09_g08810 Coffea canephora HOM05D003675 ORTHO05D004318 1.5e-112 409.8 256 76.6
Os01g0304100 Oryza sativa ssp. japonica HOM05D003675 ORTHO05D004318 1.5e-112 409.8 257 77.4
AUR62015052 Chenopodium quinoa HOM05D003675 ORTHO05D004318 2.0e-112 409.5 256 75.4
Solyc02g070290.3 Solanum lycopersicum HOM05D003675 ORTHO05D004318 2.0e-112 409.5 256 77.7
Sopen02g019380 Solanum pennellii HOM05D003675 ORTHO05D004318 2.0e-112 409.5 256 77.7
CsaV3_1G037400 Cucumis sativus L. HOM05D003675 ORTHO05D004318 2.6e-112 409.1 256 77.0
Lalb_Chr08g0233231 Lupinus albus HOM05D003675 ORTHO05D004318 2.6e-112 409.1 256 76.2
Sabra11G0086100 Salix brachista HOM05D003675 ORTHO05D004318 2.6e-112 409.1 256 76.6
PGSC0003DMG400003173 Solanum tuberosum HOM05D003675 ORTHO05D004318 2.6e-112 409.1 256 77.0
Oeu015186.1 Olea europaea HOM05D003675 ORTHO05D004318 4.4e-112 408.3 256 76.2
Prupe.4G088900 Prunus persica HOM05D003675 ORTHO05D004318 4.4e-112 408.3 256 75.4
AUR62014439 Chenopodium quinoa HOM05D003675 ORTHO05D004318 5.7e-112 407.9 256 75.0
Peaxi162Scf00155g01015 Petunia axillaris HOM05D003675 ORTHO05D004318 5.7e-112 407.9 256 76.6
PGSC0003DMG400021101 Solanum tuberosum HOM05D003675 ORTHO05D004318 7.5e-112 407.5 256 77.3
Ah.12g053620 Amaranthus hybridus HOM05D003675 ORTHO05D004318 1.3e-111 406.8 256 75.0
Potri.011G090900 Populus trichocarpa HOM05D003675 ORTHO05D004318 1.7e-111 406.4 256 76.6
AUR62034562 Chenopodium quinoa HOM05D003675 ORTHO05D004318 2.9e-111 405.6 256 74.6
MELO3C002803.2 Cucumis melo HOM05D003675 ORTHO05D004318 2.9e-111 405.6 256 76.6
Potri.001G357600 Populus trichocarpa HOM05D003675 ORTHO05D004318 2.9e-111 405.6 256 76.6
EL10Ac8g20233 Beta vulgaris HOM05D003675 ORTHO05D004318 3.7e-111 405.2 256 74.6
Manes.14G134400 Manihot esculenta HOM05D003675 ORTHO05D004318 3.7e-111 405.2 258 76.7
SGA_v2.0_scaffold51G18648 Striga asiatica HOM05D003675 ORTHO05D004318 3.7e-111 405.2 258 75.2
ClCG03G006310 Citrullus lanatus HOM05D003675 ORTHO05D004318 6.3e-111 404.4 256 76.2
VMungo1309G0958 Vigna mungo HOM05D003675 ORTHO05D004318 8.3e-111 404.1 258 76.0
Phvul.009G216800 Phaseolus vulgaris HOM05D003675 ORTHO05D004318 1.4e-110 403.3 258 75.6
Ca_02515_v3 Cicer arietinum L. HOM05D003675 ORTHO05D004318 1.8e-110 402.9 256 75.4
Sed0018861 Sechium edule HOM05D003675 ORTHO05D004318 1.8e-110 402.9 256 76.2
Hund06713 Selenicereus undatus HOM05D003675 ORTHO05D004318 4.1e-110 401.7 256 75.8
Sed0017115 Sechium edule HOM05D003675 ORTHO05D004318 2.0e-109 399.4 256 75.0
CAN.G660.39 Capsicum annuum HOM05D003675 ORTHO05D004318 2.7e-109 399.1 256 75.4
Sabra16G0235300 Salix brachista HOM05D003675 ORTHO05D004318 2.7e-109 399.1 256 75.4
arahy.Tifrunner.gnm1.ann1.71J8LW Arachis hypogaea HOM05D003675 ORTHO05D004318 4.6e-109 398.3 256 74.6
arahy.Tifrunner.gnm1.ann1.F8HCHG Arachis hypogaea HOM05D003675 ORTHO05D004318 4.6e-109 398.3 256 74.6
Lsat_1_v5_gn_4_241 Lactuca sativa HOM05D003675 ORTHO05D004318 4.6e-109 398.3 256 73.0
arahy.Tifrunner.gnm1.ann1.119T42 Arachis hypogaea HOM05D003675 ORTHO05D004318 5.9e-109 397.9 256 74.6
Aa31LG6G11710 Aethionema arabicum HOM05D003675 ORTHO05D004318 1.0e-108 397.1 257 75.1
DCAR_027870 Daucus carota HOM05D003675 ORTHO05D004318 3.9e-108 395.2 256 72.7
AL1G44390 Arabidopsis lyrata HOM05D003675 ORTHO05D004318 6.6e-108 394.4 256 74.6
Thhalv10006695m.g Eutrema salsugineum HOM05D003675 ORTHO05D004318 6.6e-108 394.4 256 74.6
Sp1g26270 Schrenkiella parvula HOM05D003675 ORTHO05D004318 1.1e-107 393.7 256 74.2
Carub.0001s2862 Capsella rubella HOM05D003675 ORTHO05D004318 1.9e-107 392.9 256 74.6
Sc24g0001490 Simmondsia chinensis HOM05D003675 ORTHO05D004318 1.9e-107 392.9 256 72.3
AT1G30450 Arabidopsis thaliana HOM05D003675 ORTHO05D004318 2.5e-107 392.5 256 74.2
BcaNung05260 Brassica carinata HOM05D003675 ORTHO05D004318 4.3e-107 391.7 256 73.8
CARHR029820 Cardamine hirsuta HOM05D003675 ORTHO05D004318 4.3e-107 391.7 256 73.8
Lalb_Chr11g0073421 Lupinus albus HOM05D003675 ORTHO05D004318 4.7e-106 388.3 256 72.3
C07p15140 Brassica napus HOM05D003675 ORTHO05D004318 6.2e-106 387.9 256 73.4
BolC7t42018H Brassica oleracea HOM05D003675 ORTHO05D004318 6.2e-106 387.9 256 73.4
Aa31LG10G6660 Aethionema arabicum HOM05D003675 ORTHO05D004318 8.0e-106 387.5 256 73.8
BcaC01g00192 Brassica carinata HOM05D003675 ORTHO05D004318 8.0e-106 387.5 256 73.0
C03p76760 Brassica napus HOM05D003675 ORTHO05D004318 8.0e-106 387.5 256 73.0
BolC3t19930H Brassica oleracea HOM05D003675 ORTHO05D004318 8.0e-106 387.5 256 73.0
A08p24460 Brassica napus HOM05D003675 ORTHO05D004318 1.0e-105 387.1 256 73.0
BraA08t34402Z Brassica rapa HOM05D003675 ORTHO05D004318 1.0e-105 387.1 256 73.0
A07p09940 Brassica napus HOM05D003675 ORTHO05D004318 1.8e-105 386.3 256 73.0
BraA07t28783Z Brassica rapa HOM05D003675 ORTHO05D004318 1.8e-105 386.3 256 73.0
Lsat_1_v5_gn_8_147381 Lactuca sativa HOM05D003675 ORTHO05D004318 9.8e-104 380.6 256 72.3
CDE07G0962 Ceratophyllum demersum HOM05D003675 ORTHO05D004318 1.7e-103 379.8 257 73.2
CDE04G1522 Ceratophyllum demersum HOM05D003675 ORTHO05D004318 2.9e-103 379.0 257 72.8
Zm00001eb197200 Zea mays HOM05D003675 ORTHO05D004318 2.9e-103 379.0 257 71.2
SHI20675 Sapria himalayana HOM05D003675 ORTHO05D000023 9.2e-102 374.0 262 72.1
ATR1098G088 Amborella trichopoda HOM05D003675 ORTHO05D004318 1.1e-99 367.1 256 71.9
Nitab4.5_0006732g0010 Nicotiana tabacum HOM05D003675 ORTHO05D004318 3.3e-99 365.5 228 77.6
SGA_v2.0_scaffold106G30664 Striga asiatica HOM05D003675 ORTHO05D004318 3.3e-99 365.5 256 69.9
MBI18_g34277_MAGBIO Magnolia biondii HOM05D003675 ORTHO05D004318 2.8e-98 362.5 256 73.0
SEGI_15305 Sequoiadendron giganteum HOM05D003675 ORTHO05D004318 1.8e-97 359.8 259 68.3
HanXRQChr12g0385671 Helianthus annuus HOM05D003675 ORTHO05D004318 4.0e-97 358.6 256 68.4
unitig_37.g12081 Utricularia gibba HOM05D003675 ORTHO05D004318 4.4e-96 355.1 239 71.5
ECA233G3702 Erigeron canadensis HOM05D003675 ORTHO05D004318 1.4e-94 350.1 227 73.6
SMO141G0147 Selaginella moellendorffii HOM05D003675 ORTHO05D004318 1.2e-93 347.1 259 66.4
Mapoly0050s0083 Marchantia polymorpha HOM05D003675 ORTHO05D004318 3.5e-93 345.5 259 66.8
AagrBONN_evm.TU.Sc2ySwM_344.2138 Anthoceros agrestis HOM05D003675 ORTHO05D004318 7.8e-93 344.4 260 67.7
Pp3c2_27310 Physcomitrium patens HOM05D003675 ORTHO05D004318 6.2e-90 334.7 262 61.8
arahy.Tifrunner.gnm1.ann1.DS3C7B Arachis hypogaea HOM05D003675 ORTHO05D004318 6.8e-89 331.3 210 75.7
vmacro23352 Vaccinium macrocarpon HOM05D003675 ORTHO05D004318 8.9e-89 330.9 206 76.7
Psat3g081440 Pisum sativum HOM05D004114 ORTHO05D004667 1.5e-88 330.1 199 78.4
Pp3c13_9730 Physcomitrium patens HOM05D003675 ORTHO05D004318 9.9e-88 327.4 261 60.2
Pp3c13_9737 Physcomitrium patens HOM05D003675 ORTHO05D004318 9.9e-88 327.4 261 60.2
Pp3c1_10530 Physcomitrium patens HOM05D003675 ORTHO05D004318 1.1e-86 323.9 262 59.9
TAR626G0983 Trochodendron aralioides HOM05D003675 ORTHO05D004318 2.3e-84 316.2 192 77.1
CBR_g27771 Chara braunii HOM05D003675 ORTHO05D004318 8.6e-84 314.3 223 65.0
BcaB03g13829 Brassica carinata HOM05D003675 ORTHO05D004318 6.4e-79 298.1 203 71.9
Psat1g019680 Pisum sativum HOM05D003675 ORTHO05D004318 4.9e-71 271.9 260 56.5
Nitab4.5_0000100g0150 Nicotiana tabacum HOM05D003675 ORTHO05D004318 1.9e-54 216.9 148 72.3
Pp3c6_17940 Physcomitrium patens HOM05D003675 ORTHO05D004318 3.1e-41 172.9 125 64.0
Psat3g081480 Pisum sativum HOM05D003675 ORTHO05D004318 9.0e-41 171.4 180 50.0
RcHm_v2.0_Chr5g0015801 Rosa chinensis HOM05D003675 ORTHO05D004318 5.5e-38 162.2 116 70.7
PRCOL_00004754 Prasinoderma coloniale HOM05D003675 ORTHO05D004318 2.0e-35 153.7 333 31.2
Nitab4.5_0005814g0040 Nicotiana tabacum HOM05D003675 ORTHO05D004318 1.9e-30 137.1 142 52.8
Mapoly0078s0036 Marchantia polymorpha HOM05D003675 ORTHO05D004318 2.5e-30 136.7 201 30.8
SMO304G0144 Selaginella moellendorffii HOM05D003675 ORTHO05D004318 2.2e-26 123.6 240 27.5
AagrBONN_evm.TU.Sc2ySwM_362.1613 Anthoceros agrestis HOM05D003675 ORTHO05D004318 8.2e-26 121.7 201 29.9
Pp3c1_28340 Physcomitrium patens HOM05D003675 ORTHO05D004318 1.2e-24 117.9 192 30.2
Pp3c17_10600 Physcomitrium patens HOM05D003675 ORTHO05D004318 2.0e-24 117.1 192 29.7
Nitab4.5_0007290g0030 Nicotiana tabacum HOM05D003675 ORTHO05D004318 2.6e-24 116.7 93 61.3
Pp3c14_11040 Physcomitrium patens HOM05D003675 ORTHO05D004318 4.5e-24 115.9 192 29.7
PRCOL_00002134 Prasinoderma coloniale HOM05D003675 ORTHO05D004318 5.0e-23 112.5 197 31.0
MCO15G428 Micromonas commoda HOM05D003675 ORTHO05D004318 8.8e-20 101.7 210 27.6
RcHm_v2.0_Chr5g0015811 Rosa chinensis HOM05D003675 ORTHO05D004318 1.8e-09 67.4 37 78.4
Haze_27044 Corylus avellana HOM05D003675 ORTHO05D004318 5.9e-08 62.4 83 31.3


User provided reference genes

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