Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_010652 Vanilla planifolia HOM05D007513 ORTHO05D008148 3.2e-116 421.8 213 100.0
HPP92_010626 Vanilla planifolia HOM05D007513 ORTHO05D008148 1.2e-70 270.4 151 92.1
CsaV3_3G041080 Cucumis sativus L. HOM05D007513 ORTHO05D008148 5.4e-15 85.5 65 64.6
TAR381G0870 Trochodendron aralioides HOM05D001879 ORTHO05D007648 9.2e-15 84.7 62 62.9
Manes.13G112700 Manihot esculenta HOM05D007513 ORTHO05D008148 1.6e-14 84.0 59 71.2
Dinv04064 Davidia involucrata HOM05D007513 ORTHO05D008148 3.5e-14 82.8 60 65.0
ClCG10G015420 Citrullus lanatus HOM05D007513 ORTHO05D008148 6.0e-14 82.0 65 63.1
Aqoxy7G03437 Aquilegia oxysepala HOM05D007513 ORTHO05D008148 7.8e-14 81.6 66 60.6
CiPaw.02G003300 Carya illinoinensis HOM05D007513 ORTHO05D008148 1.0e-13 81.3 60 66.7
CDE07G2080 Ceratophyllum demersum HOM05D007513 ORTHO05D008148 1.0e-13 81.3 60 65.0
Atru.chr3.182 Acer truncatum HOM05D007513 ORTHO05D008148 1.7e-13 80.5 65 61.5
Actinidia03699 Actinidia chinensis HOM05D007513 ORTHO05D008148 5.0e-13 79.0 60 61.7
Atru.chr3.153 Acer truncatum HOM05D007513 ORTHO05D008148 6.6e-13 78.6 64 60.9
CANSAT01G0833 Cannabis sativa HOM05D007513 ORTHO05D008148 6.6e-13 78.6 59 66.1
Eucgr.A01208 Eucalyptus grandis HOM05D007513 ORTHO05D008148 6.6e-13 78.6 58 67.2
Os03g0205150 Oryza sativa ssp. japonica HOM05D007513 ORTHO05D008148 6.6e-13 78.6 75 52.0
Dinv26918 Davidia involucrata HOM05D007513 ORTHO05D008148 8.6e-13 78.2 59 64.4
TWI09G0373 Tripterygium wilfordii HOM05D007513 ORTHO05D008148 1.9e-12 77.0 60 63.3
Ciclev10023109m.g Citrus clementina HOM05D007513 ORTHO05D008148 2.5e-12 76.6 59 66.1
SGA_v2.0_scaffold486G52374 Striga asiatica HOM05D007513 ORTHO05D008148 2.5e-12 76.6 57 64.9
TPR.G24448 Trifolium pratense HOM05D007513 ORTHO05D008148 3.3e-12 76.3 61 62.3
CSS0045444 Camellia sinensis var. sinensis HOM05D007513 ORTHO05D008148 4.3e-12 75.9 92 45.7
MD15G1295400 Malus domestica HOM05D007513 ORTHO05D008148 5.6e-12 75.5 63 63.5
AUR62016920 Chenopodium quinoa HOM05D007513 ORTHO05D008148 7.3e-12 75.1 74 55.4
Cc04_g16170 Coffea canephora HOM05D007513 ORTHO05D008148 7.3e-12 75.1 60 58.3
Medtr4g088715 Medicago truncatula HOM05D007513 ORTHO05D008148 7.3e-12 75.1 60 60.0
Potri.009G004400 Populus trichocarpa HOM05D007513 ORTHO05D008148 7.3e-12 75.1 59 64.4
CSS0003656 Camellia sinensis var. sinensis HOM05D007513 ORTHO05D008148 9.5e-12 74.7 59 61.0
Gohir.D03G027900 Gossypium hirsutum HOM05D007513 ORTHO05D008148 1.2e-11 74.3 81 48.1
SalBow6G0964 Salvia bowleyana HOM05D007513 ORTHO05D008148 1.2e-11 74.3 77 48.1
unitig_0.g544 Utricularia gibba HOM05D007513 ORTHO05D008148 1.2e-11 74.3 66 50.0
TWI73G0368 Tripterygium wilfordii HOM05D007513 ORTHO05D008148 1.6e-11 73.9 60 61.7
Hma1.2p1_0730F.1_g209790 Hydrangea macrophylla HOM05D007513 ORTHO05D008148 2.1e-11 73.6 60 60.0
ECA233G3995 Erigeron canadensis HOM05D007513 ORTHO05D008148 3.6e-11 72.8 78 47.4
HanXRQChr08g0219141 Helianthus annuus HOM05D007513 ORTHO05D008148 3.6e-11 72.8 60 56.7
PGR102G1378 Punica granatum HOM05D007513 ORTHO05D008148 3.6e-11 72.8 60 60.0
Sc16g0003000 Simmondsia chinensis HOM05D007513 ORTHO05D008148 4.7e-11 72.4 67 58.2
Duzib264G1124 Durio zibethinus HOM05D007513 ORTHO05D008148 6.2e-11 72.0 68 54.4
HanXRQChr08g0219071 Helianthus annuus HOM05D007513 ORTHO05D008148 6.2e-11 72.0 60 56.7
MELO3C030975.2 Cucumis melo HOM05D007513 ORTHO05D008148 8.1e-11 71.6 55 63.6
Lsat_1_v5_gn_8_17020 Lactuca sativa HOM05D007513 ORTHO05D008148 8.1e-11 71.6 60 56.7
MD02G1183800 Malus domestica HOM05D007513 ORTHO05D008148 8.1e-11 71.6 62 62.9
Sed0010624 Sechium edule HOM05D007513 ORTHO05D008148 8.1e-11 71.6 59 61.0
Ca_18552_v3 Cicer arietinum L. HOM05D007513 ORTHO05D008148 1.1e-10 71.2 61 57.4
Lsat_1_v5_gn_8_19701 Lactuca sativa HOM05D007513 ORTHO05D008148 1.1e-10 71.2 60 56.7
Thecc.01G071100 Theobroma cacao HOM05D007513 ORTHO05D008148 1.1e-10 71.2 60 61.7
vmacro14398 Vaccinium macrocarpon HOM05D007513 ORTHO05D008148 1.4e-10 70.9 60 58.3
Rhsim11G0028000 Rhododendron simsii HOM05D007513 ORTHO05D008148 2.3e-10 70.1 60 56.7
Nitab4.5_0001417g0120 Nicotiana tabacum HOM05D007513 ORTHO05D008148 5.2e-10 68.9 58 58.6
GSVIVG01023476001 Vitis vinifera HOM05D007513 ORTHO05D008148 6.8e-10 68.6 60 58.3
Psat6g024240 Pisum sativum HOM05D007513 ORTHO05D008148 8.9e-10 68.2 82 43.9
CSS0005454 Camellia sinensis var. sinensis HOM05D007513 ORTHO05D008148 1.2e-09 67.8 58 58.6
CSS0011696 Camellia sinensis var. sinensis HOM05D007513 ORTHO05D008148 1.2e-09 67.8 58 58.6
Thhalv10027185m.g Eutrema salsugineum HOM05D007513 ORTHO05D008148 1.5e-09 67.4 73 49.3
Prupe.6G222400 Prunus persica HOM05D007513 ORTHO05D008148 1.5e-09 67.4 57 64.9
arahy.Tifrunner.gnm1.ann1.P2RW0X Arachis hypogaea HOM05D007513 ORTHO05D008148 2.0e-09 67.0 60 55.0
arahy.Tifrunner.gnm1.ann1.QIRY5C Arachis hypogaea HOM05D007513 ORTHO05D008148 2.0e-09 67.0 60 55.0
DCAR_017173 Daucus carota HOM05D007513 ORTHO05D008148 2.0e-09 67.0 59 61.0
Nitab4.5_0000714g0120 Nicotiana tabacum HOM05D007513 ORTHO05D008148 2.0e-09 67.0 57 59.6
Lalb_Chr08g0235081 Lupinus albus HOM05D007513 ORTHO05D008148 2.6e-09 66.6 61 50.8
Psat6g076840 Pisum sativum HOM05D007513 ORTHO05D008148 3.4e-09 66.2 58 55.2
arahy.Tifrunner.gnm1.ann1.8F1CK2 Arachis hypogaea HOM05D007513 ORTHO05D008148 4.4e-09 65.9 60 53.3
arahy.Tifrunner.gnm1.ann1.LDCV9W Arachis hypogaea HOM05D007513 ORTHO05D008148 4.4e-09 65.9 94 39.4
DCAR_013160 Daucus carota HOM05D007513 ORTHO05D008148 4.4e-09 65.9 57 61.4
PGSC0003DMG400014868 Solanum tuberosum HOM05D007513 ORTHO05D008148 4.4e-09 65.9 57 59.6
vmacro07203 Vaccinium macrocarpon HOM05D007513 ORTHO05D008148 4.4e-09 65.9 79 43.0
Ah.14g088990 Amaranthus hybridus HOM05D007513 ORTHO05D008148 7.5e-09 65.1 59 55.9
Lalb_Chr24g0403261 Lupinus albus HOM05D007513 ORTHO05D008148 9.8e-09 64.7 61 49.2
Solyc03g044080.4 Solanum lycopersicum HOM05D007513 ORTHO05D008148 2.9e-08 63.2 57 56.1
Cpa.g.sc6.31 Carica papaya HOM05D007513 ORTHO05D008148 4.9e-08 62.4 52 63.5
Glyma.06G321800 Glycine max HOM05D007513 ORTHO05D008148 1.1e-07 61.2 81 43.2
Phvul.005G004100 Phaseolus vulgaris HOM05D007513 ORTHO05D008148 1.1e-07 61.2 59 49.2
EL10Ac8g20627 Beta vulgaris HOM05D007513 ORTHO05D008148 3.2e-07 59.7 58 51.7
Peaxi162Scf00118g02024 Petunia axillaris HOM05D007513 ORTHO05D008148 7.1e-07 58.5 47 63.8
VMungo1080G1633 Vigna mungo HOM05D007513 ORTHO05D008148 7.1e-07 58.5 48 58.3
Aa31LG6G14500 Aethionema arabicum HOM05D007513 ORTHO05D008148 9.2e-07 58.2 68 42.6
arahy.Tifrunner.gnm1.ann1.S3QGNL Arachis hypogaea HOM05D000640 ORTHO05D008148 1.2e-06 57.8 46 63.0
BcaC01g00397 Brassica carinata HOM05D007513 ORTHO05D008148 1.2e-06 57.8 69 43.5
A08p22690 Brassica napus HOM05D007513 ORTHO05D008148 1.2e-06 57.8 69 43.5
THA.LOC104807627 Tarenaya hassleriana HOM05D007513 ORTHO05D008148 1.2e-06 57.8 61 54.1
BcaNung02934 Brassica carinata HOM05D014277 ORTHO05D008148 2.1e-06 57.0 71 43.7
C03p79260 Brassica napus HOM05D007513 ORTHO05D008148 2.1e-06 57.0 70 41.4
arahy.Tifrunner.gnm1.ann1.X3Z0KH Arachis hypogaea HOM05D003009 ORTHO05D008148 2.7e-06 56.6 50 56.0
Glyma.04G112900 Glycine max HOM05D007513 ORTHO05D008148 2.7e-06 56.6 59 47.5
BolC3t20170H Brassica oleracea HOM05D007513 ORTHO05D008148 3.5e-06 56.2 69 42.0
BraA08t34236Z Brassica rapa HOM05D007513 ORTHO05D008148 4.6e-06 55.8 77 39.0
BcaB03g12338 Brassica carinata HOM05D007513 ORTHO05D008148 6.0e-06 55.5 47 53.2
C07p62480 Brassica napus HOM05D014277 ORTHO05D008148 6.0e-06 55.5 69 43.5


User provided reference genes

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