Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_010570 Vanilla planifolia HOM05D003479 ORTHO05D004659 1.0e-235 819.7 408 100.0
HPP92_010563 Vanilla planifolia HOM05D003479 ORTHO05D004659 3.2e-125 452.6 388 66.8
Nn4g25261 Nelumbo nucifera HOM05D003479 ORTHO05D004659 6.1e-116 421.8 419 59.2
MBI18_g03887_MAGBIO Magnolia biondii HOM05D003479 ORTHO05D004659 2.3e-115 419.9 429 56.6
TAR636G1704 Trochodendron aralioides HOM05D003479 ORTHO05D004659 1.3e-113 414.1 419 56.6
ATR0693G109 Amborella trichopoda HOM05D003479 ORTHO05D004659 1.1e-112 411.0 415 57.3
Aqoxy5G02886 Aquilegia oxysepala HOM05D003479 ORTHO05D004659 1.2e-111 407.5 419 56.1
PSO357G0518 Papaver somniferum HOM05D003479 ORTHO05D004659 1.7e-110 403.7 416 56.7
PSO170G1939 Papaver somniferum HOM05D003479 ORTHO05D004659 6.5e-110 401.7 416 56.0
Ciclev10018541m.g Citrus clementina HOM05D003479 ORTHO05D004659 3.2e-109 399.4 423 54.8
Cpa.g.sc57.54 Carica papaya HOM05D003479 ORTHO05D004659 4.2e-109 399.1 406 56.9
TWI14G0833 Tripterygium wilfordii HOM05D003479 ORTHO05D004659 4.2e-109 399.1 419 55.8
Actinidia06417 Actinidia chinensis HOM05D003479 ORTHO05D004659 7.2e-109 398.3 421 55.6
GSVIVG01028271001 Vitis vinifera HOM05D003479 ORTHO05D004659 7.2e-109 398.3 423 54.8
Thecc.01G328500 Theobroma cacao HOM05D003479 ORTHO05D004659 1.6e-108 397.1 419 55.6
Gohir.A08G035200 Gossypium hirsutum HOM05D003479 ORTHO05D004659 2.7e-108 396.4 418 54.8
Prupe.3G000300 Prunus persica HOM05D003479 ORTHO05D004659 2.7e-108 396.4 420 55.2
Duzib138G1436 Durio zibethinus HOM05D003479 ORTHO05D004659 8.0e-108 394.8 418 54.5
arahy.Tifrunner.gnm1.ann1.37N44H Arachis hypogaea HOM05D003479 ORTHO05D004659 1.8e-107 393.7 418 54.3
Gohir.D08G045766 Gossypium hirsutum HOM05D003479 ORTHO05D004659 1.8e-107 393.7 418 54.5
TPR.G3092 Trifolium pratense HOM05D003479 ORTHO05D004659 2.3e-107 393.3 414 55.3
Glyma.03G226200 Glycine max HOM05D003479 ORTHO05D004659 3.9e-107 392.5 417 54.9
Glyma.19G223200 Glycine max HOM05D003479 ORTHO05D004659 3.9e-107 392.5 417 54.9
arahy.Tifrunner.gnm1.ann1.RIE5PZ Arachis hypogaea HOM05D003479 ORTHO05D004659 5.2e-107 392.1 418 54.3
CSS0000124 Camellia sinensis var. sinensis HOM05D003479 ORTHO05D004659 5.2e-107 392.1 423 54.1
Gorai.004G044600 Gossypium raimondii HOM05D003479 ORTHO05D004659 5.2e-107 392.1 418 54.3
FAN19G1496 Fragaria x ananassa HOM05D003479 ORTHO05D004659 6.7e-107 391.7 436 53.7
Gohir.D11G107800 Gossypium hirsutum HOM05D003479 ORTHO05D004659 8.8e-107 391.3 422 54.0
Manes.01G236800 Manihot esculenta HOM05D003479 ORTHO05D004659 1.5e-106 390.6 419 53.7
Psat6g157360 Pisum sativum HOM05D003479 ORTHO05D004659 1.5e-106 390.6 414 55.8
Cfa004931 Carpinus fangiana HOM05D003479 ORTHO05D004659 2.0e-106 390.2 418 55.0
Medtr7g111030 Medicago truncatula HOM05D003479 ORTHO05D004659 2.6e-106 389.8 417 54.2
Dinv12068 Davidia involucrata HOM05D003479 ORTHO05D004659 3.3e-106 389.4 416 56.2
Gorai.007G115700 Gossypium raimondii HOM05D003479 ORTHO05D004659 3.3e-106 389.4 422 55.2
Atru.chr5.824 Acer truncatum HOM05D003479 ORTHO05D004659 5.7e-106 388.7 428 52.8
Gohir.A11G103400 Gossypium hirsutum HOM05D003479 ORTHO05D004659 5.7e-106 388.7 422 55.0
Haze_05171 Corylus avellana HOM05D003479 ORTHO05D004659 7.4e-106 388.3 415 55.9
Psat3g015760 Pisum sativum HOM05D003479 ORTHO05D004659 9.7e-106 387.9 417 54.0
CiPaw.07G128000 Carya illinoinensis HOM05D003479 ORTHO05D004659 1.3e-105 387.5 415 54.2
CDE11G0371 Ceratophyllum demersum HOM05D003479 ORTHO05D004659 1.3e-105 387.5 401 54.9
Gohir.A08G122400 Gossypium hirsutum HOM05D003479 ORTHO05D004659 1.3e-105 387.5 416 54.8
Gorai.004G148300 Gossypium raimondii HOM05D003479 ORTHO05D004659 1.3e-105 387.5 416 54.8
Potri.014G109900 Populus trichocarpa HOM05D003479 ORTHO05D004659 1.3e-105 387.5 419 53.5
VMungo1383G0820 Vigna mungo HOM05D003479 ORTHO05D004659 1.3e-105 387.5 417 54.0
Glyma.20G089300 Glycine max HOM05D003479 ORTHO05D004659 2.2e-105 386.7 415 54.9
MD17G1285800 Malus domestica HOM05D003479 ORTHO05D004659 3.7e-105 386.0 426 54.2
Phvul.001G220000 Phaseolus vulgaris HOM05D003479 ORTHO05D004659 3.7e-105 386.0 417 54.2
FvH4_1g26030 Fragaria vesca HOM05D003479 ORTHO05D004659 6.3e-105 385.2 420 54.5
Ca_10221_v3 Cicer arietinum L. HOM05D003479 ORTHO05D004659 8.2e-105 384.8 414 54.1
Medtr1g085300 Medicago truncatula HOM05D003479 ORTHO05D004659 8.2e-105 384.8 416 54.8
FAN23G2105 Fragaria x ananassa HOM05D003479 ORTHO05D004659 1.4e-104 384.0 420 54.0
RcHm_v2.0_Chr3g0485491 Rosa chinensis HOM05D003479 ORTHO05D004659 1.4e-104 384.0 424 54.2
Zm00001eb049240 Zea mays HOM05D003479 ORTHO05D004659 1.4e-104 384.0 414 55.3
FAN28G1829 Fragaria x ananassa HOM05D003479 ORTHO05D004659 2.4e-104 383.3 420 54.3
QL09p037617 Quercus lobata HOM05D003479 ORTHO05D004659 2.4e-104 383.3 419 54.2
CiPaw.08G080000 Carya illinoinensis HOM05D003479 ORTHO05D004659 3.1e-104 382.9 420 54.3
Lj5g0020342 Lotus japonicus HOM05D003479 ORTHO05D004659 3.1e-104 382.9 420 54.8
CsaV3_6G000310 Cucumis sativus L. HOM05D003479 ORTHO05D004659 5.3e-104 382.1 419 53.2
Os03g0586700 Oryza sativa ssp. japonica HOM05D003479 ORTHO05D004659 7.0e-104 381.7 418 52.9
ClCG06G004120 Citrullus lanatus HOM05D003479 ORTHO05D004659 9.1e-104 381.3 419 53.2
Lalb_Chr04g0260231 Lupinus albus HOM05D003479 ORTHO05D004659 1.6e-103 380.6 418 54.1
Potri.002G184400 Populus trichocarpa HOM05D003479 ORTHO05D004659 2.0e-103 380.2 415 54.2
Glyma.10G140500 Glycine max HOM05D003479 ORTHO05D004659 5.9e-103 378.6 419 54.2
Eucgr.K00546 Eucalyptus grandis HOM05D003479 ORTHO05D004659 1.3e-102 377.5 414 54.6
CARHR172360 Cardamine hirsuta HOM05D003479 ORTHO05D004659 1.7e-102 377.1 421 54.4
AT3G62010 Arabidopsis thaliana HOM05D003479 ORTHO05D004659 3.8e-102 375.9 421 54.4
Carub.0005s2876 Capsella rubella HOM05D003479 ORTHO05D004659 3.8e-102 375.9 421 54.4
COL.COLO4_23088 Corchorus olitorius HOM05D003479 ORTHO05D004659 5.0e-102 375.6 449 52.6
Sed0010094 Sechium edule HOM05D003479 ORTHO05D004659 8.5e-102 374.8 419 52.7
CANSAT25G3435 Cannabis sativa HOM05D003479 ORTHO05D004659 1.1e-101 374.4 417 52.3
Thhalv10005753m.g Eutrema salsugineum HOM05D003479 ORTHO05D004659 1.1e-101 374.4 421 53.9
THA.LOC104817410 Tarenaya hassleriana HOM05D003479 ORTHO05D004659 1.5e-101 374.0 420 52.9
BcaC07g42626 Brassica carinata HOM05D003479 ORTHO05D004659 2.5e-101 373.2 420 53.6
Cc01_g21710 Coffea canephora HOM05D003479 ORTHO05D004659 2.5e-101 373.2 415 54.2
BcaC07g40697 Brassica carinata HOM05D003479 ORTHO05D004659 5.5e-101 372.1 420 53.3
C08p36970 Brassica napus HOM05D003479 ORTHO05D004659 5.5e-101 372.1 420 53.3
BolC8t51274H Brassica oleracea HOM05D003479 ORTHO05D004659 5.5e-101 372.1 420 53.3
AL5G44630 Arabidopsis lyrata HOM05D003479 ORTHO05D004659 7.2e-101 371.7 421 53.9
A09p54080 Brassica napus HOM05D003479 ORTHO05D004659 7.2e-101 371.7 420 53.1
BraA09t40821Z Brassica rapa HOM05D003479 ORTHO05D004659 7.2e-101 371.7 420 53.1
Sp5g01350 Schrenkiella parvula HOM05D003479 ORTHO05D004659 7.2e-101 371.7 421 53.4
Aa31LG10G15990 Aethionema arabicum HOM05D003479 ORTHO05D004659 2.1e-100 370.2 421 52.7
Eucgr.K00763 Eucalyptus grandis HOM05D003479 ORTHO05D004659 2.1e-100 370.2 423 53.2
EL10As5g23623 Beta vulgaris HOM05D003479 ORTHO05D004659 2.7e-100 369.8 421 52.0
Lalb_Chr18g0046291 Lupinus albus HOM05D003479 ORTHO05D004659 4.7e-100 369.0 417 52.0
AUR62011690 Chenopodium quinoa HOM05D003479 ORTHO05D004659 8.0e-100 368.2 423 52.5
Pp3c25_5940 Physcomitrium patens HOM05D003479 ORTHO05D004659 8.0e-100 368.2 412 51.7
Sopen01g030540 Solanum pennellii HOM05D003479 ORTHO05D004659 1.0e-99 367.9 418 51.9
Migut.D00003 Erythranthe guttata HOM05D003479 ORTHO05D004659 1.8e-99 367.1 422 52.4
Solyc01g068590.4 Solanum lycopersicum HOM05D003479 ORTHO05D004659 1.8e-99 367.1 418 51.9
THA.LOC104802111 Tarenaya hassleriana HOM05D003479 ORTHO05D004659 4.0e-99 365.9 420 51.9
Gohir.D08G143700 Gossypium hirsutum HOM05D003479 ORTHO05D004659 6.8e-99 365.2 360 57.8
Nitab4.5_0002103g0090 Nicotiana tabacum HOM05D003479 ORTHO05D004659 1.2e-98 364.4 418 52.2
Sabra14G0081100 Salix brachista HOM05D003479 ORTHO05D004659 1.4e-96 357.5 348 57.2
Lsat_1_v5_gn_9_7140 Lactuca sativa HOM05D003479 ORTHO05D004659 3.1e-96 356.3 425 51.8
vmacro02352 Vaccinium macrocarpon HOM05D003479 ORTHO05D004659 4.1e-96 355.9 527 44.2
Mapoly0022s0091 Marchantia polymorpha HOM05D003479 ORTHO05D004659 5.3e-96 355.5 416 51.2
FAN26G2262 Fragaria x ananassa HOM05D003479 ORTHO05D004659 1.2e-95 354.4 420 51.2
HanXRQChr15g0464511 Helianthus annuus HOM05D003479 ORTHO05D004659 1.6e-95 354.0 427 52.0
Pp3c5_15420 Physcomitrium patens HOM05D003479 ORTHO05D004659 2.7e-95 353.2 416 50.2
SMO367G0831 Selaginella moellendorffii HOM05D003479 ORTHO05D004659 8.5e-94 348.2 422 50.5
MELO3C021223.2 Cucumis melo HOM05D003479 ORTHO05D004659 1.1e-93 347.8 474 47.0
Peaxi162Scf00309g00510 Petunia axillaris HOM05D003479 ORTHO05D004659 7.2e-93 345.1 414 50.5
DCAR_018236 Daucus carota HOM05D003479 ORTHO05D004659 1.2e-92 344.4 355 54.9
DCAR_012290 Daucus carota HOM05D003479 ORTHO05D004659 1.8e-91 340.5 417 49.9
ECA247G3194 Erigeron canadensis HOM05D003479 ORTHO05D004659 2.0e-90 337.0 365 53.4
Ah.02g112690 Amaranthus hybridus HOM05D003479 ORTHO05D004659 3.4e-90 336.3 423 51.1
QL09p037594 Quercus lobata HOM05D003479 ORTHO05D004659 6.3e-89 332.0 230 73.0
Sc05g0000020 Simmondsia chinensis HOM05D003479 ORTHO05D004659 1.0e-83 314.7 230 68.3
Hund11617 Selenicereus undatus HOM05D003479 ORTHO05D004659 1.4e-83 314.3 232 69.4
SGA_v2.0_scaffold80G25672 Striga asiatica HOM05D003479 ORTHO05D004659 3.4e-82 309.7 233 69.5
SEGI_16825 Sequoiadendron giganteum HOM05D003479 ORTHO05D004659 1.7e-81 307.4 218 70.2
AagrBONN_evm.TU.Sc2ySwM_344.258 Anthoceros agrestis HOM05D003479 ORTHO05D004659 5.0e-78 295.8 234 66.7
Oeu052594.2 Olea europaea HOM05D003479 ORTHO05D004659 9.5e-77 291.6 293 55.6
BcaC09g50076 Brassica carinata HOM05D003479 ORTHO05D004659 9.8e-74 281.6 231 63.2
BraA01t02268Z Brassica rapa HOM05D003479 ORTHO05D004659 2.2e-73 280.4 229 64.2
Ca_09257_v3 Cicer arietinum L. HOM05D003479 ORTHO05D004659 2.7e-71 273.5 416 43.3
C01p29360 Brassica napus HOM05D003479 ORTHO05D004659 8.3e-57 225.3 402 42.0
A01p23620 Brassica napus HOM05D003479 ORTHO05D004659 1.3e-54 218.0 411 40.9
FAN23G1814 Fragaria x ananassa HOM05D003479 ORTHO05D004659 6.6e-54 215.7 145 73.1
Rhsim01G0001400 Rhododendron simsii HOM05D003479 ORTHO05D004659 9.6e-53 211.8 142 71.8
Cre01.g054800 Chlamydomonas reinhardtii HOM05D003479 ORTHO05D004659 1.6e-47 194.5 434 32.5
BolC1t02872H Brassica oleracea HOM05D003479 ORTHO05D004659 7.8e-47 192.2 231 51.5
BolC1t02863H Brassica oleracea HOM05D003479 ORTHO05D004659 1.7e-46 191.0 324 43.2
Nitab4.5_0001628g0060 Nicotiana tabacum HOM05D003479 ORTHO05D004659 7.6e-42 175.6 116 73.3
unitig_578.g16649 Utricularia gibba HOM05D003479 ORTHO05D004659 1.9e-40 171.0 336 39.3
AUR62024550 Chenopodium quinoa HOM05D003479 ORTHO05D004659 5.1e-38 162.9 326 39.6
Lju2566C1G2 Lonicera japonica HOM05D003479 ORTHO05D004659 2.1e-36 157.5 421 29.0
MD09G1292000 Malus domestica HOM05D003479 ORTHO05D004659 4.6e-31 139.8 464 27.4
HPP92_010564 Vanilla planifolia HOM05D003479 ORTHO05D004659 4.6e-31 139.8 346 29.5
CDE11G0667 Ceratophyllum demersum HOM05D003479 ORTHO05D004659 2.3e-30 137.5 241 34.9
AUR62024549 Chenopodium quinoa HOM05D003479 ORTHO05D004659 1.1e-29 135.2 95 72.6
Gohir.D08G045832 Gossypium hirsutum HOM05D003479 ORTHO05D004659 3.7e-28 130.2 237 34.6
unitig_578.g16647 Utricularia gibba HOM05D003479 ORTHO05D004659 4.2e-24 116.7 240 32.5
Lsat_1_v5_gn_6_105821 Lactuca sativa HOM05D003479 ORTHO05D016156 3.5e-23 113.6 76 72.4
Lsat_1_v5_gn_6_44740 Lactuca sativa HOM05D003479 ORTHO05D004659 3.5e-23 113.6 76 72.4
Lsat_1_v5_gn_9_52321 Lactuca sativa HOM05D003479 ORTHO05D004659 3.5e-23 113.6 76 72.4
Rhsim01G0001500 Rhododendron simsii HOM05D003479 ORTHO05D004659 4.3e-21 106.7 224 36.6
Lsat_1_v5_gn_2_13561 Lactuca sativa HOM05D003479 ORTHO05D004659 7.4e-21 105.9 86 60.5
Nitab4.5_0001628g0070 Nicotiana tabacum HOM05D003479 ORTHO05D004659 1.4e-19 101.7 223 36.3
Lsat_1_v5_gn_2_36600 Lactuca sativa HOM05D003479 ORTHO05D004659 6.1e-15 86.3 61 67.2
SEGI_06113 Sequoiadendron giganteum HOM05D003479 ORTHO05D004659 1.0e-14 85.5 276 27.9
Eucgr.K00541 Eucalyptus grandis HOM05D003479 ORTHO05D004659 3.9e-14 83.6 216 35.2
TPR.G23936 Trifolium pratense HOM05D003479 ORTHO05D004659 8.7e-14 82.4 178 32.6
SEGI_12620 Sequoiadendron giganteum HOM05D003479 ORTHO05D004659 1.3e-12 78.6 108 46.3
unitig_578.g16646 Utricularia gibba HOM05D003479 ORTHO05D004659 5.3e-11 73.2 123 35.8
Lju2566A0G21 Lonicera japonica HOM05D003479 ORTHO05D004659 6.9e-11 72.8 108 44.4
MBI08_g20552_MAGBIO Magnolia biondii HOM05D003479 ORTHO05D000004 4.5e-10 70.1 47 76.6
Sabra02G0131400 Salix brachista HOM05D003479 ORTHO05D004659 5.9e-10 69.7 108 43.5
MD09G1291900 Malus domestica HOM05D003479 ORTHO05D004659 7.7e-10 69.3 183 29.5
CAN.G179.23 Capsicum annuum HOM05D003479 ORTHO05D004659 2.5e-08 64.3 109 41.3
BolC1t02865H Brassica oleracea HOM05D003479 ORTHO05D004659 1.2e-07 62.0 52 57.7
BolC1t02870H Brassica oleracea HOM05D003479 ORTHO05D004659 1.2e-07 62.0 52 57.7
BolC1t02871H Brassica oleracea HOM05D003479 ORTHO05D004659 1.2e-07 62.0 52 57.7
CDE05G2601 Ceratophyllum demersum HOM05D003479 ORTHO05D004659 8.8e-06 55.8 151 33.8


User provided reference genes

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