Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_010410 Vanilla planifolia HOM05D005555 ORTHO05D006923 1.1e-232 809.7 422 100.0
TAR627G0887 Trochodendron aralioides HOM05D005555 ORTHO05D006923 1.4e-152 543.5 428 68.9
GSVIVG01037655001 Vitis vinifera HOM05D005555 ORTHO05D006923 1.2e-151 540.4 422 68.7
Dinv22259 Davidia involucrata HOM05D005555 ORTHO05D006923 3.9e-150 535.4 430 68.1
Gorai.009G438400 Gossypium raimondii HOM05D005555 ORTHO05D006923 1.1e-149 533.9 429 67.8
Nn1g07133 Nelumbo nucifera HOM05D005555 ORTHO05D006923 3.3e-149 532.3 428 67.5
Eucgr.F03470 Eucalyptus grandis HOM05D005555 ORTHO05D006923 8.1e-148 527.7 430 68.1
CSS0046165 Camellia sinensis var. sinensis HOM05D005555 ORTHO05D006923 1.4e-147 526.9 431 66.4
PSO541G4760 Papaver somniferum HOM05D005555 ORTHO05D006923 2.4e-147 526.2 420 69.0
Duzib268G1179 Durio zibethinus HOM05D005555 ORTHO05D006923 3.1e-147 525.8 429 66.7
Gohir.A04G016500 Gossypium hirsutum HOM05D005555 ORTHO05D006923 9.0e-147 524.2 424 67.5
TWI39G0347 Tripterygium wilfordii HOM05D005555 ORTHO05D006923 1.5e-146 523.5 437 66.1
Aqoxy1G02148 Aquilegia oxysepala HOM05D005555 ORTHO05D006923 3.4e-146 522.3 424 67.9
Ciclev10008353m.g Citrus clementina HOM05D005555 ORTHO05D006923 3.8e-145 518.8 424 67.0
Cpa.g.sc12.303 Carica papaya HOM05D005555 ORTHO05D006923 6.4e-145 518.1 418 68.2
Manes.15G071400 Manihot esculenta HOM05D005555 ORTHO05D006923 1.1e-144 517.3 433 66.5
CsaV3_7G021840 Cucumis sativus L. HOM05D005555 ORTHO05D006923 1.4e-144 516.9 426 66.4
Thecc.07G035900 Theobroma cacao HOM05D005555 ORTHO05D006923 1.4e-144 516.9 425 67.3
Gohir.D05G369700 Gossypium hirsutum HOM05D005555 ORTHO05D006923 1.9e-144 516.5 429 66.2
THA.LOC104817858 Tarenaya hassleriana HOM05D005555 ORTHO05D006923 4.2e-144 515.4 422 67.3
Actinidia35345 Actinidia chinensis HOM05D005555 ORTHO05D006923 2.7e-143 512.7 434 65.2
ECA240G0357 Erigeron canadensis HOM05D005555 ORTHO05D006923 6.0e-143 511.5 418 66.7
PSO675G4173 Papaver somniferum HOM05D005555 ORTHO05D006923 1.3e-142 510.4 420 68.3
QL08p010014 Quercus lobata HOM05D005555 ORTHO05D006923 5.1e-142 508.4 428 64.7
CSS0038584 Camellia sinensis var. sinensis HOM05D005555 ORTHO05D006923 6.7e-142 508.1 435 64.4
Lj6g0008930 Lotus japonicus HOM05D005555 ORTHO05D006923 8.7e-142 507.7 426 64.1
CDE04G3207 Ceratophyllum demersum HOM05D005555 ORTHO05D006923 1.1e-141 507.3 424 65.1
Sed0005603 Sechium edule HOM05D005555 ORTHO05D006923 3.3e-141 505.8 432 65.3
CiPaw.12G130100 Carya illinoinensis HOM05D005555 ORTHO05D006923 4.3e-141 505.4 424 65.6
VMungo0540G1244 Vigna mungo HOM05D005555 ORTHO05D006923 2.8e-140 502.7 426 62.4
arahy.Tifrunner.gnm1.ann1.P3VUIG Arachis hypogaea HOM05D005555 ORTHO05D006923 3.7e-140 502.3 429 63.9
Solyc12g005050.2 Solanum lycopersicum HOM05D005555 ORTHO05D006923 4.8e-140 501.9 429 63.9
MSTRG.6923 Avicennia marina HOM05D005555 ORTHO05D006923 6.2e-140 501.5 424 65.1
BcaB02g11175 Brassica carinata HOM05D005555 ORTHO05D006923 8.2e-140 501.1 409 68.2
RcHm_v2.0_Chr2g0139231 Rosa chinensis HOM05D005555 ORTHO05D006923 8.2e-140 501.1 439 64.0
Migut.M01757 Erythranthe guttata HOM05D005555 ORTHO05D006923 1.1e-139 500.7 423 64.5
Lj8C169T24 Lonicera japonica HOM05D005555 ORTHO05D006923 1.1e-139 500.7 470 61.3
Lalb_Chr20g0113831 Lupinus albus HOM05D005555 ORTHO05D006923 1.4e-139 500.4 427 63.5
DCAR_016709 Daucus carota HOM05D005555 ORTHO05D006923 1.8e-139 500.0 430 65.6
CiPaw.11G190000 Carya illinoinensis HOM05D005555 ORTHO05D006923 2.4e-139 499.6 432 64.6
Rhsim06G0217300 Rhododendron simsii HOM05D005555 ORTHO05D006923 2.4e-139 499.6 449 61.9
CANSAT11G1088 Cannabis sativa HOM05D005555 ORTHO05D006923 3.1e-139 499.2 429 64.8
A06p02920 Brassica napus HOM05D005555 ORTHO05D006923 6.9e-139 498.0 413 67.8
BraA06t23497Z Brassica rapa HOM05D005555 ORTHO05D006923 6.9e-139 498.0 413 67.8
arahy.Tifrunner.gnm1.ann1.UR7PB1 Arachis hypogaea HOM05D005555 ORTHO05D006923 9.0e-139 497.7 429 63.6
BcaC08g43248 Brassica carinata HOM05D005555 ORTHO05D006923 9.0e-139 497.7 413 67.6
C06p05960 Brassica napus HOM05D005555 ORTHO05D006923 9.0e-139 497.7 413 67.6
BolC6t35709H Brassica oleracea HOM05D005555 ORTHO05D006923 9.0e-139 497.7 413 67.6
Nitab4.5_0008473g0010 Nicotiana tabacum HOM05D005555 ORTHO05D006923 9.0e-139 497.7 435 63.0
MD17G1190200 Malus domestica HOM05D005555 ORTHO05D006923 1.2e-138 497.3 426 64.6
Sp1g37550 Schrenkiella parvula HOM05D005555 ORTHO05D006923 1.2e-138 497.3 416 68.0
Hund15555 Selenicereus undatus HOM05D005555 ORTHO05D006923 1.2e-138 497.3 424 63.2
Aa31LG10G3630 Aethionema arabicum HOM05D005555 ORTHO05D006923 1.5e-138 496.9 420 66.2
Potri.011G090800 Populus trichocarpa HOM05D005555 ORTHO05D006923 1.5e-138 496.9 436 63.8
Sopen12g001050 Solanum pennellii HOM05D005555 ORTHO05D006923 1.5e-138 496.9 429 63.4
MBI05_g12021_MAGBIO Magnolia biondii HOM05D005555 ORTHO05D006923 2.6e-138 496.1 426 65.7
PGR031G0129 Punica granatum HOM05D005555 ORTHO05D006923 2.6e-138 496.1 438 63.5
Glyma.18G096300 Glycine max HOM05D005555 ORTHO05D006923 3.4e-138 495.7 422 62.1
BcaC08g43250 Brassica carinata HOM05D005555 ORTHO05D006923 4.5e-138 495.4 413 67.3
Gorai.009G438500 Gossypium raimondii HOM05D005555 ORTHO05D006923 4.5e-138 495.4 429 64.3
AL1G58400 Arabidopsis lyrata HOM05D005555 ORTHO05D006923 5.8e-138 495.0 414 66.4
Lsat_1_v5_gn_2_47780 Lactuca sativa HOM05D005555 ORTHO05D006923 5.8e-138 495.0 419 65.4
arahy.Tifrunner.gnm1.ann1.QY89IE Arachis hypogaea HOM05D005555 ORTHO05D006923 1.3e-137 493.8 429 62.9
Carub.0001s3974 Capsella rubella HOM05D005555 ORTHO05D006923 1.3e-137 493.8 414 66.2
Glyma.08G316800 Glycine max HOM05D005555 ORTHO05D006923 1.7e-137 493.4 422 62.1
Thhalv10011513m.g Eutrema salsugineum HOM05D005555 ORTHO05D006923 2.2e-137 493.0 415 66.7
Phvul.006G044000 Phaseolus vulgaris HOM05D005555 ORTHO05D006923 2.2e-137 493.0 422 61.6
FAN14G2902 Fragaria x ananassa HOM05D005555 ORTHO05D006923 6.5e-137 491.5 440 63.2
Atru.chr2.3417 Acer truncatum HOM05D005555 ORTHO05D006923 1.4e-136 490.3 426 64.3
AT1G50710 Arabidopsis thaliana HOM05D005555 ORTHO05D006923 1.4e-136 490.3 414 65.9
Ah.10g032310 Amaranthus hybridus HOM05D005555 ORTHO05D006923 3.2e-136 489.2 426 62.4
CAN.G542.3 Capsicum annuum HOM05D005555 ORTHO05D006923 3.2e-136 489.2 421 63.2
FAN05G3309 Fragaria x ananassa HOM05D005555 ORTHO05D006923 9.3e-136 487.6 440 62.5
Prupe.3G065100 Prunus persica HOM05D005555 ORTHO05D006923 9.3e-136 487.6 422 64.7
SGA_v2.0_scaffold172G39000 Striga asiatica HOM05D005555 ORTHO05D006923 1.6e-135 486.9 431 62.2
TPR.G33802 Trifolium pratense HOM05D005555 ORTHO05D006923 4.6e-135 485.3 433 61.9
BraA05t20906Z Brassica rapa HOM05D005555 ORTHO05D006923 7.9e-135 484.6 409 66.0
Medtr3g052180 Medicago truncatula HOM05D005555 ORTHO05D006923 7.9e-135 484.6 423 62.2
PGSC0003DMG400027869 Solanum tuberosum HOM05D005555 ORTHO05D006923 7.9e-135 484.6 435 62.1
EL10Ac2g03146 Beta vulgaris HOM05D005555 ORTHO05D006923 3.0e-134 482.6 449 60.4
A05p19990 Brassica napus HOM05D005555 ORTHO05D006923 6.7e-134 481.5 408 65.9
CARHR040810 Cardamine hirsuta HOM05D005555 ORTHO05D006923 6.7e-134 481.5 414 65.0
DCAR_001508 Daucus carota HOM05D005555 ORTHO05D006923 6.7e-134 481.5 430 64.2
Nn1g03520 Nelumbo nucifera HOM05D005555 ORTHO05D006923 6.7e-134 481.5 429 62.5
ClCG09G010820 Citrullus lanatus HOM05D005555 ORTHO05D006923 1.1e-133 480.7 475 57.9
Psat5g178680 Pisum sativum HOM05D005555 ORTHO05D006923 3.3e-133 479.2 424 62.3
ATR0752G192 Amborella trichopoda HOM05D005555 ORTHO05D006923 2.8e-132 476.1 420 62.4
unitig_744.g24404 Utricularia gibba HOM05D005555 ORTHO05D006923 3.7e-132 475.7 420 61.9
Medtr5g049170 Medicago truncatula HOM05D005555 ORTHO05D006923 6.3e-132 474.9 423 60.8
Cc05_g13620 Coffea canephora HOM05D005555 ORTHO05D006923 8.2e-132 474.6 428 61.2
HanXRQChr03g0076481 Helianthus annuus HOM05D005555 ORTHO05D006923 2.4e-131 473.0 394 65.7
MELO3C013162.2 Cucumis melo HOM05D005555 ORTHO05D006923 1.2e-130 470.7 437 62.0
Cc07_g19690 Coffea canephora HOM05D005555 ORTHO05D006923 1.5e-130 470.3 428 61.2
Sc03g0008570 Simmondsia chinensis HOM05D005555 ORTHO05D006923 3.8e-129 465.7 382 65.4
Zm00001eb230170 Zea mays HOM05D005555 ORTHO05D006923 2.5e-128 463.0 412 62.6
Sabra11G0086200 Salix brachista HOM05D005555 ORTHO05D006923 4.6e-127 458.8 448 58.9
arahy.Tifrunner.gnm1.ann1.GVQ212 Arachis hypogaea HOM05D005555 ORTHO05D006923 1.8e-126 456.8 464 56.5
MD09G1208700 Malus domestica HOM05D005555 ORTHO05D006923 1.8e-126 456.8 415 62.4
Nitab4.5_0000981g0050 Nicotiana tabacum HOM05D005555 ORTHO05D006923 1.8e-126 456.8 468 56.8
MD03G1200100 Malus domestica HOM05D005555 ORTHO05D006923 8.8e-126 454.5 416 59.9
CSS0007038 Camellia sinensis var. sinensis HOM05D005555 ORTHO05D006923 1.9e-125 453.4 448 58.7
FAN02G4472 Fragaria x ananassa HOM05D005555 ORTHO05D006923 9.7e-125 451.1 440 59.3
BcaB07g33510 Brassica carinata HOM05D005555 ORTHO05D006923 3.1e-123 446.0 426 61.3
Peaxi162Scf00660g00816 Petunia axillaris HOM05D005555 ORTHO05D006923 6.1e-119 431.8 384 62.0
Dinv40759 Davidia involucrata HOM05D005555 ORTHO05D006923 1.0e-118 431.0 390 62.3
Ca_14731_v3 Cicer arietinum L. HOM05D005555 ORTHO05D006923 1.4e-118 430.6 513 50.1
AUR62018195 Chenopodium quinoa HOM05D005555 ORTHO05D006923 3.9e-118 429.1 436 56.7
HanXRQChr05g0134351 Helianthus annuus HOM05D005555 ORTHO05D006923 3.9e-118 429.1 425 57.6
Haze_09680 Corylus avellana HOM05D005555 ORTHO05D006923 7.0e-115 418.3 487 53.4
vmacro11723 Vaccinium macrocarpon HOM05D005555 ORTHO05D006923 5.9e-114 415.2 527 50.1
SMO352G0045 Selaginella moellendorffii HOM05D005555 ORTHO05D006923 1.1e-112 411.0 402 57.0
Cfa020338 Carpinus fangiana HOM05D005555 ORTHO05D006923 7.4e-109 398.3 391 58.8
RcHm_v2.0_Chr5g0039771 Rosa chinensis HOM05D005555 ORTHO05D006923 3.7e-108 396.0 417 54.9
Gohir.D05G369900 Gossypium hirsutum HOM05D005555 ORTHO05D006923 1.4e-107 394.0 423 56.3
FvH4_3g22760 Fragaria vesca HOM05D005555 ORTHO05D006923 3.5e-106 389.4 415 54.2
Mapoly0032s0110 Marchantia polymorpha HOM05D005555 ORTHO05D006923 3.2e-104 382.9 435 50.6
Prupe.4G214200 Prunus persica HOM05D005555 ORTHO05D006923 2.1e-103 380.2 368 57.1
Gohir.D05G370300 Gossypium hirsutum HOM05D005555 ORTHO05D006923 3.0e-102 376.3 377 59.4
Pp3c17_11280 Physcomitrium patens HOM05D005555 ORTHO05D006923 9.7e-101 371.3 415 52.8
FvH4_6g31880 Fragaria vesca HOM05D005555 ORTHO05D006923 1.7e-100 370.5 329 63.2
Sed0020027 Sechium edule HOM05D005555 ORTHO05D006923 8.5e-97 358.2 396 55.6
arahy.Tifrunner.gnm1.ann1.92YVPD Arachis hypogaea HOM05D005555 ORTHO05D006923 9.4e-96 354.8 430 49.5
FAN16G3656 Fragaria x ananassa HOM05D005555 ORTHO05D006923 1.4e-94 350.9 395 52.4
AUR62038682 Chenopodium quinoa HOM05D005555 ORTHO05D006923 4.8e-92 342.4 431 48.7
arahy.Tifrunner.gnm1.ann1.21WID0 Arachis hypogaea HOM05D005555 ORTHO05D006923 8.0e-87 325.1 436 45.6
TPR.G5778 Trifolium pratense HOM05D005555 ORTHO05D006923 1.0e-86 324.7 340 54.4
FAN25G0297 Fragaria x ananassa HOM05D005555 ORTHO05D006923 4.4e-77 292.7 353 50.1
CBR_g19746 Chara braunii HOM05D005555 ORTHO05D006923 3.3e-64 250.0 370 41.4
CBR_g6714 Chara braunii HOM05D005555 ORTHO05D006923 1.3e-57 228.0 422 37.0
Medtr5g049150 Medicago truncatula HOM05D005555 ORTHO05D006923 5.4e-51 206.1 216 53.2
Os02g0119100 Oryza sativa ssp. japonica HOM05D005555 ORTHO05D006923 1.4e-35 154.8 205 49.3
TPR.G5733 Trifolium pratense HOM05D005555 ORTHO05D006923 2.5e-27 127.5 84 76.2
Hma1.2p1_0206F.1_g087650 Hydrangea macrophylla HOM05D005555 ORTHO05D006923 1.3e-17 95.1 51 86.3
Hma1.2p1_0545F.1_g176020 Hydrangea macrophylla HOM05D005555 ORTHO05D006923 1.8e-17 94.7 51 86.3
Lsat_1_v5_gn_9_94361 Lactuca sativa HOM05D005555 ORTHO05D006923 1.5e-13 81.6 55 72.7


User provided reference genes

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