Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_010393 Vanilla planifolia HOM05D000344 ORTHO05D014129 4.6e-261 904.0 464 100.0
Os02g0795000 Oryza sativa ssp. japonica HOM05D000344 ORTHO05D005296 4.6e-19 100.1 272 31.6
TWI34G1136 Tripterygium wilfordii HOM05D000344 ORTHO05D005296 4.8e-16 90.1 277 31.8
Duzib168G1790 Durio zibethinus HOM05D000344 ORTHO05D005296 2.4e-15 87.8 264 32.6
Manes.06G036300 Manihot esculenta HOM05D000344 ORTHO05D005296 2.4e-15 87.8 264 34.1
Actinidia04295 Actinidia chinensis HOM05D000344 ORTHO05D005296 4.0e-15 87.0 453 28.0
Haze_19213 Corylus avellana HOM05D000344 ORTHO05D005296 1.5e-14 85.1 291 32.3
Nitab4.5_0006879g0010 Nicotiana tabacum HOM05D000344 ORTHO05D005296 4.5e-14 83.6 109 47.7
CANSAT11G2628 Cannabis sativa HOM05D000344 ORTHO05D005296 7.6e-14 82.8 325 32.0
Duzib150G1122 Durio zibethinus HOM05D000344 ORTHO05D005296 9.9e-14 82.4 272 31.6
Nitab4.5_0009049g0030 Nicotiana tabacum HOM05D000344 ORTHO05D005296 9.9e-14 82.4 109 47.7
GSVIVG01001910001 Vitis vinifera HOM05D000344 ORTHO05D005296 9.9e-14 82.4 110 49.1
Hma1.2p1_0222F.1_g093490 Hydrangea macrophylla HOM05D000344 ORTHO05D005296 1.3e-13 82.0 251 33.5
Ciclev10007375m.g Citrus clementina HOM05D000344 ORTHO05D005296 2.9e-13 80.9 259 33.6
QL02p093136 Quercus lobata HOM05D000344 ORTHO05D005296 2.9e-13 80.9 273 31.9
DCAR_019390 Daucus carota HOM05D000344 ORTHO05D005296 3.8e-13 80.5 110 47.3
arahy.Tifrunner.gnm1.ann1.704TPP Arachis hypogaea HOM05D000344 ORTHO05D005296 4.9e-13 80.1 93 49.5
Duzib187G1763 Durio zibethinus HOM05D000344 ORTHO05D005296 1.9e-12 78.2 262 33.6
Gohir.A05G052400 Gossypium hirsutum HOM05D000344 ORTHO05D005296 3.2e-12 77.4 196 35.2
Cfa021217 Carpinus fangiana HOM05D000344 ORTHO05D005296 4.2e-12 77.0 292 31.5
Oeu027650.1 Olea europaea HOM05D000344 ORTHO05D005296 4.2e-12 77.0 99 45.5
Thhalv10012558m.g Eutrema salsugineum HOM05D000344 ORTHO05D005296 5.5e-12 76.6 236 31.8
Phvul.003G156400 Phaseolus vulgaris HOM05D000344 ORTHO05D005296 5.5e-12 76.6 513 26.5
MD02G1008300 Malus domestica HOM05D000344 ORTHO05D005296 7.1e-12 76.3 104 44.2
Prupe.7G262200 Prunus persica HOM05D000344 ORTHO05D005296 7.1e-12 76.3 283 32.2
ATR0739G085 Amborella trichopoda HOM05D000344 ORTHO05D005296 9.3e-12 75.9 282 28.4
THA.LOC104817823 Tarenaya hassleriana HOM05D000344 ORTHO05D005296 1.2e-11 75.5 223 31.4
THA.LOC104811836 Tarenaya hassleriana HOM05D000344 ORTHO05D005296 1.6e-11 75.1 352 27.6
MSTRG.10689 Avicennia marina HOM05D000344 ORTHO05D005296 2.1e-11 74.7 98 42.9
Os06g0184300 Oryza sativa ssp. japonica HOM05D000344 ORTHO05D005296 2.1e-11 74.7 282 27.0
Eucgr.C00353 Eucalyptus grandis HOM05D000344 ORTHO05D005296 2.7e-11 74.3 266 31.6
Aa31LG3G13780 Aethionema arabicum HOM05D000344 ORTHO05D005296 3.5e-11 73.9 477 26.2
SalBow5G5380 Salvia bowleyana HOM05D000344 ORTHO05D005296 3.5e-11 73.9 105 45.7
Lalb_Chr13g0300881 Lupinus albus HOM05D000344 ORTHO05D005296 4.6e-11 73.6 265 30.9
Cfa020829 Carpinus fangiana HOM05D000344 ORTHO05D014129 6.0e-11 73.2 100 45.0
Oeu052192.1 Olea europaea HOM05D000344 ORTHO05D005296 6.0e-11 73.2 368 26.6
VMungo1215G2428 Vigna mungo HOM05D000344 ORTHO05D005296 6.0e-11 73.2 510 25.5
Cc06_g15070 Coffea canephora HOM05D000344 ORTHO05D005296 7.9e-11 72.8 105 43.8
TAR636G1075 Trochodendron aralioides HOM05D000344 ORTHO05D005296 1.0e-10 72.4 105 42.9
Atru.chr7.119 Acer truncatum HOM05D000344 ORTHO05D005296 1.3e-10 72.0 249 32.5
Zm00001eb374670 Zea mays HOM05D000344 ORTHO05D005296 1.3e-10 72.0 220 29.5
Sc17g0006710 Simmondsia chinensis HOM05D000344 ORTHO05D005296 1.8e-10 71.6 271 30.6
PGSC0003DMG400011136 Solanum tuberosum HOM05D000344 ORTHO05D005296 1.8e-10 71.6 109 42.2
unitig_8.g3634 Utricularia gibba HOM05D000344 ORTHO05D005296 1.8e-10 71.6 99 46.5
SalBow1G0321 Salvia bowleyana HOM05D000344 ORTHO05D005296 2.3e-10 71.2 105 43.8
Lalb_Chr12g0198671 Lupinus albus HOM05D000344 ORTHO05D005296 3.0e-10 70.9 287 31.0
Medtr4g130940 Medicago truncatula HOM05D000344 ORTHO05D005296 3.0e-10 70.9 259 28.2
Sopen07g001630 Solanum pennellii HOM05D000344 ORTHO05D005296 3.0e-10 70.9 109 41.3
SGA_v2.0_scaffold12G05989 Striga asiatica HOM05D000344 ORTHO05D005296 3.0e-10 70.9 100 44.0
Thecc.09G031500 Theobroma cacao HOM05D000344 ORTHO05D005296 3.0e-10 70.9 230 31.7
Ca_21122_v3 Cicer arietinum L. HOM05D000344 ORTHO05D005296 3.9e-10 70.5 309 30.1
Solyc07g005530.4 Solanum lycopersicum HOM05D000344 ORTHO05D005296 3.9e-10 70.5 109 41.3
BcaB01g04469 Brassica carinata HOM05D000344 ORTHO05D005296 5.1e-10 70.1 214 32.7
Gohir.A08G251700 Gossypium hirsutum HOM05D000344 ORTHO05D005296 6.7e-10 69.7 232 32.3
CDE02G1206 Ceratophyllum demersum HOM05D000344 ORTHO05D005296 8.7e-10 69.3 253 30.0
Lj4g0022650 Lotus japonicus HOM05D000344 ORTHO05D005296 8.7e-10 69.3 509 26.5
A03p12460 Brassica napus HOM05D000344 ORTHO05D005296 1.5e-09 68.6 231 31.2
BraA03t10561Z Brassica rapa HOM05D000344 ORTHO05D005296 1.5e-09 68.6 231 31.2
COL.COLO4_18799 Corchorus olitorius HOM05D000344 ORTHO05D005296 1.5e-09 68.6 473 24.3
Cc11_g03310 Coffea canephora HOM05D000344 ORTHO05D005296 1.9e-09 68.2 237 31.2
Aqoxy7G03425 Aquilegia oxysepala HOM05D000344 ORTHO05D005296 2.5e-09 67.8 293 31.1
AL8G34070 Arabidopsis lyrata HOM05D000344 ORTHO05D005296 3.3e-09 67.4 345 26.1
SHI02820 Sapria himalayana HOM05D000344 ORTHO05D005296 3.3e-09 67.4 245 29.8
TAR625G0471 Trochodendron aralioides HOM05D000344 ORTHO05D005296 4.3e-09 67.0 294 31.3
Gorai.009G055700 Gossypium raimondii HOM05D000344 ORTHO05D005296 5.6e-09 66.6 271 30.6
C03p14670 Brassica napus HOM05D000344 ORTHO05D005296 7.4e-09 66.2 269 30.1
BolC3t13908H Brassica oleracea HOM05D000344 ORTHO05D005296 9.6e-09 65.9 269 30.1
CiPaw.16G113400 Carya illinoinensis HOM05D000344 ORTHO05D005296 9.6e-09 65.9 302 29.1
Rhsim01G0034200 Rhododendron simsii HOM05D000344 ORTHO05D005296 1.3e-08 65.5 462 27.5
BraA02t05880Z Brassica rapa HOM05D000344 ORTHO05D005296 2.1e-08 64.7 268 28.7
FAN23G2562 Fragaria x ananassa HOM05D000344 ORTHO05D005296 2.1e-08 64.7 296 31.1
RcHm_v2.0_Chr2g0085751 Rosa chinensis HOM05D000344 ORTHO05D005296 2.1e-08 64.7 241 31.5
FAN28G1751 Fragaria x ananassa HOM05D000344 ORTHO05D005296 2.8e-08 64.3 306 31.0
Hma1.2p1_0028F.1_g017540 Hydrangea macrophylla HOM05D000344 ORTHO05D005296 2.8e-08 64.3 214 34.6
ClCG02G014550 Citrullus lanatus HOM05D000344 ORTHO05D005296 3.7e-08 63.9 290 29.0
Gorai.004G291700 Gossypium raimondii HOM05D000344 ORTHO05D005296 3.7e-08 63.9 289 30.1
Peaxi162Scf00252g00019 Petunia axillaris HOM05D000344 ORTHO05D005296 3.7e-08 63.9 284 31.3
Potri.018G107500 Populus trichocarpa HOM05D000344 ORTHO05D005296 3.7e-08 63.9 263 33.8
AT5G57990 Arabidopsis thaliana HOM05D000344 ORTHO05D005296 4.8e-08 63.5 140 31.4
Migut.K00330 Erythranthe guttata HOM05D000344 ORTHO05D005296 4.8e-08 63.5 280 29.6
FvH4_1g01010 Fragaria vesca HOM05D000344 ORTHO05D005296 4.8e-08 63.5 297 32.0
CARHR271780 Cardamine hirsuta HOM05D000344 ORTHO05D005296 6.2e-08 63.2 193 27.5
Gohir.D08G273300 Gossypium hirsutum HOM05D000344 ORTHO05D005296 6.2e-08 63.2 289 30.1
Lj4g0019888 Lotus japonicus HOM05D000344 ORTHO05D005296 6.2e-08 63.2 497 24.1
TPR.G24857 Trifolium pratense HOM05D000344 ORTHO05D005296 6.2e-08 63.2 270 27.8
FAN26G2818 Fragaria x ananassa HOM05D000344 ORTHO05D005296 1.1e-07 62.4 254 31.1
Sp6g19650 Schrenkiella parvula HOM05D000344 ORTHO05D005296 1.1e-07 62.4 327 27.8
BolC9t57831H Brassica oleracea HOM05D000344 ORTHO05D005296 1.4e-07 62.0 183 32.8
AUR62034662 Chenopodium quinoa HOM05D000344 ORTHO05D005296 1.8e-07 61.6 93 43.0
HanXRQChr10g0313751 Helianthus annuus HOM05D000344 ORTHO05D005296 1.8e-07 61.6 146 34.9
MD15G1152500 Malus domestica HOM05D000344 ORTHO05D005296 1.8e-07 61.6 449 25.4
CSS0016122 Camellia sinensis var. sinensis HOM05D000344 ORTHO05D014129 2.4e-07 61.2 64 54.7
Psat4g109520 Pisum sativum HOM05D000344 ORTHO05D005296 2.4e-07 61.2 260 28.8
Sed0018237 Sechium edule HOM05D000344 ORTHO05D005296 2.4e-07 61.2 270 29.3
TPR.G8014 Trifolium pratense HOM05D000344 ORTHO05D005296 2.4e-07 61.2 79 46.8
arahy.Tifrunner.gnm1.ann1.ALG29P Arachis hypogaea HOM05D000344 ORTHO05D005296 4.0e-07 60.5 484 24.4
CAN.G160.72 Capsicum annuum HOM05D000344 ORTHO05D005296 4.0e-07 60.5 283 30.4
Glyma.17G074200 Glycine max HOM05D000344 ORTHO05D005296 5.3e-07 60.1 278 29.1
C02p13720 Brassica napus HOM05D000344 ORTHO05D005296 9.0e-07 59.3 250 31.2
BolC2t07490H Brassica oleracea HOM05D000344 ORTHO05D005296 9.0e-07 59.3 250 31.2
AUR62008577 Chenopodium quinoa HOM05D000344 ORTHO05D005296 1.2e-06 58.9 101 39.6
Gohir.D05G053900 Gossypium hirsutum HOM05D000344 ORTHO05D005296 1.2e-06 58.9 266 32.0
GSVIVG01014079001 Vitis vinifera HOM05D000344 ORTHO05D005296 1.2e-06 58.9 224 28.1
Aa31LG1G19290 Aethionema arabicum HOM05D003806 ORTHO05D004346 3.4e-06 57.4 72 41.7
Potri.006G185200 Populus trichocarpa HOM05D000344 ORTHO05D005296 3.4e-06 57.4 275 30.9
PGR142G4209 Punica granatum HOM05D000344 ORTHO05D005296 4.5e-06 57.0 479 24.4
CSS0010351 Camellia sinensis var. sinensis HOM05D000344 ORTHO05D014129 5.8e-06 56.6 65 50.8
Sabra18G0091500 Salix brachista HOM05D000344 ORTHO05D005296 5.8e-06 56.6 259 31.3
CsaV3_2G007460 Cucumis sativus L. HOM05D000344 ORTHO05D005296 7.6e-06 56.2 290 27.2


User provided reference genes

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