Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_010165 Vanilla planifolia HOM05D006897 ORTHO05D008825 7.0e-59 230.3 110 100.0
HPP92_010241 Vanilla planifolia HOM05D006897 ORTHO05D008825 1.5e-29 132.9 63 98.4
HPP92_010447 Vanilla planifolia HOM05D006897 ORTHO05D008825 1.5e-29 132.9 63 98.4
CDE05G1066 Ceratophyllum demersum HOM05D006897 ORTHO05D008825 7.1e-19 97.4 63 63.5
Nn2g13847 Nelumbo nucifera HOM05D006897 ORTHO05D008825 7.1e-19 97.4 63 63.5
CDE02G4617 Ceratophyllum demersum HOM05D006897 ORTHO05D008825 9.2e-19 97.1 63 63.5
CiPaw.09G169900 Carya illinoinensis HOM05D006897 ORTHO05D008825 1.6e-18 96.3 63 66.7
TAR623G0762 Trochodendron aralioides HOM05D000468 ORTHO05D000548 1.6e-18 96.3 63 63.5
Carub.0004s1868 Capsella rubella HOM05D006897 ORTHO05D008825 2.1e-18 95.9 63 61.9
CARHR131290 Cardamine hirsuta HOM05D006897 ORTHO05D008825 2.1e-18 95.9 63 61.9
AL4G33030 Arabidopsis lyrata HOM05D006897 ORTHO05D008825 3.5e-18 95.1 63 61.9
Nn6g35243 Nelumbo nucifera HOM05D006897 ORTHO05D008825 3.5e-18 95.1 63 63.5
Thecc.05G070500 Theobroma cacao HOM05D006897 ORTHO05D008825 3.5e-18 95.1 64 65.6
AT2G36835 Arabidopsis thaliana HOM05D006897 ORTHO05D008825 4.6e-18 94.7 63 61.9
Manes.08G012300 Manihot esculenta HOM05D006897 ORTHO05D008825 4.6e-18 94.7 63 63.5
Aqoxy1G01120 Aquilegia oxysepala HOM05D006897 ORTHO05D008825 6.0e-18 94.4 63 60.3
BcaC02g11805 Brassica carinata HOM05D006897 ORTHO05D008825 6.0e-18 94.4 63 61.9
A05p09040 Brassica napus HOM05D006897 ORTHO05D008825 6.0e-18 94.4 63 61.9
C04p11190 Brassica napus HOM05D006897 ORTHO05D008825 6.0e-18 94.4 63 61.9
BolC4t22765H Brassica oleracea HOM05D006897 ORTHO05D008825 6.0e-18 94.4 63 61.9
BraA05t19865Z Brassica rapa HOM05D006897 ORTHO05D008825 6.0e-18 94.4 63 61.9
Thhalv10017426m.g Eutrema salsugineum HOM05D006897 ORTHO05D008825 6.0e-18 94.4 63 60.3
Sp4g19090 Schrenkiella parvula HOM05D006897 ORTHO05D008825 6.0e-18 94.4 63 61.9
Aa31LG5G22050 Aethionema arabicum HOM05D006897 ORTHO05D008825 7.8e-18 94.0 63 60.3
BcaB02g09328 Brassica carinata HOM05D006897 ORTHO05D008825 7.8e-18 94.0 63 61.9
Prupe.7G126900 Prunus persica HOM05D006897 ORTHO05D008825 1.0e-17 93.6 63 60.3
GSVIVG01033669001 Vitis vinifera HOM05D006897 ORTHO05D008825 1.0e-17 93.6 63 58.7
ECA233G4308 Erigeron canadensis HOM05D000468 ORTHO05D000548 1.3e-17 93.2 63 60.3
COL.COLO4_26923 Corchorus olitorius HOM05D006897 ORTHO05D008825 1.7e-17 92.8 63 65.1
MBI04_g13674_MAGBIO Magnolia biondii HOM05D000468 ORTHO05D000548 1.7e-17 92.8 63 60.3
PSO339G3187 Papaver somniferum HOM05D006897 ORTHO05D008825 2.3e-17 92.4 63 58.7
Sabra06G0096400 Salix brachista HOM05D006897 ORTHO05D008825 2.3e-17 92.4 69 58.0
Cfa017644 Carpinus fangiana HOM05D006897 ORTHO05D008825 3.0e-17 92.0 63 60.3
RcHm_v2.0_Chr3g0470611 Rosa chinensis HOM05D006897 ORTHO05D008825 3.0e-17 92.0 63 57.1
Haze_20509 Corylus avellana HOM05D006897 ORTHO05D008825 3.9e-17 91.7 63 60.3
Gohir.A11G323600 Gossypium hirsutum HOM05D006897 ORTHO05D008825 3.9e-17 91.7 63 60.3
Gohir.D11G342700 Gossypium hirsutum HOM05D006897 ORTHO05D008825 3.9e-17 91.7 63 60.3
Gorai.007G372800 Gossypium raimondii HOM05D006897 ORTHO05D008825 3.9e-17 91.7 63 60.3
Potri.006G122200 Populus trichocarpa HOM05D006897 ORTHO05D008825 3.9e-17 91.7 69 59.4
PSO063G5108 Papaver somniferum HOM05D006897 ORTHO05D008825 5.1e-17 91.3 63 58.7
Cpa.g.sc92.100 Carica papaya HOM05D006897 ORTHO05D008825 8.7e-17 90.5 63 61.9
CSS0029455 Camellia sinensis var. sinensis HOM05D006897 ORTHO05D008825 1.5e-16 89.7 63 58.7
Oeu041483.1 Olea europaea HOM05D006897 ORTHO05D008825 1.5e-16 89.7 63 60.3
TWI74G0074 Tripterygium wilfordii HOM05D006897 ORTHO05D008825 1.5e-16 89.7 63 58.7
FAN09G4221 Fragaria x ananassa HOM05D006897 ORTHO05D008825 1.9e-16 89.4 63 58.7
FvH4_6g16650 Fragaria vesca HOM05D006897 ORTHO05D008825 2.5e-16 89.0 63 57.1
FAN05G5588 Fragaria x ananassa HOM05D006897 ORTHO05D008825 2.5e-16 89.0 63 57.1
FAN14G2109 Fragaria x ananassa HOM05D006897 ORTHO05D008825 2.5e-16 89.0 63 57.1
Lj3A989T53 Lonicera japonica HOM05D006897 ORTHO05D008825 2.5e-16 89.0 63 58.7
FAN05G2962 Fragaria x ananassa HOM05D006897 ORTHO05D008825 3.3e-16 88.6 63 55.6
HanXRQChr13g0400941 Helianthus annuus HOM05D006897 ORTHO05D008825 5.6e-16 87.8 63 57.1
Lsat_1_v5_gn_6_28260 Lactuca sativa HOM05D006897 ORTHO05D008825 5.6e-16 87.8 63 57.1
QL07p042737 Quercus lobata HOM05D006897 ORTHO05D008825 9.6e-16 87.0 63 58.7
Gohir.D04G109600 Gossypium hirsutum HOM05D006897 ORTHO05D008825 1.2e-15 86.7 63 58.7
MD04G1090000 Malus domestica HOM05D006897 ORTHO05D008825 1.2e-15 86.7 63 54.0
Ca_08918_v3 Cicer arietinum L. HOM05D006897 ORTHO05D008825 1.6e-15 86.3 63 55.6
Nitab4.5_0000527g0030 Nicotiana tabacum HOM05D006897 ORTHO05D008825 1.6e-15 86.3 63 55.6
Nitab4.5_0002626g0030 Nicotiana tabacum HOM05D000468 ORTHO05D000548 1.6e-15 86.3 63 55.6
Nitab4.5_0009369g0010 Nicotiana tabacum HOM05D006897 ORTHO05D008825 1.6e-15 86.3 63 55.6
Os01g0776700 Oryza sativa ssp. japonica HOM05D006897 ORTHO05D008825 1.6e-15 86.3 67 61.2
PGSC0003DMG400028283 Solanum tuberosum HOM05D006897 ORTHO05D008825 1.6e-15 86.3 63 55.6
MSTRG.5772 Avicennia marina HOM05D006897 ORTHO05D008825 2.1e-15 85.9 63 55.6
Sed0016332 Sechium edule HOM05D006897 ORTHO05D008825 2.1e-15 85.9 62 58.1
Solyc10g083910.3 Solanum lycopersicum HOM05D006897 ORTHO05D008825 2.1e-15 85.9 63 54.0
Sopen10g033350 Solanum pennellii HOM05D006897 ORTHO05D008825 2.1e-15 85.9 63 54.0
Peaxi162Scf00311g01426 Petunia axillaris HOM05D006897 ORTHO05D008825 2.8e-15 85.5 63 54.0
Eucgr.A01649 Eucalyptus grandis HOM05D006897 ORTHO05D008825 3.6e-15 85.1 63 57.1
MD12G1108500 Malus domestica HOM05D006897 ORTHO05D008825 3.6e-15 85.1 63 52.4
arahy.Tifrunner.gnm1.ann1.12U4ZA Arachis hypogaea HOM05D006897 ORTHO05D008825 4.7e-15 84.7 63 57.1
Cc06_g04460 Coffea canephora HOM05D006897 ORTHO05D008825 6.2e-15 84.3 63 54.0
Medtr7g102930 Medicago truncatula HOM05D006897 ORTHO05D008825 6.2e-15 84.3 63 52.4
Atru.chr8.1762 Acer truncatum HOM05D006897 ORTHO05D008825 1.1e-14 83.6 63 54.0
Psat3g039920 Pisum sativum HOM05D006897 ORTHO05D008825 1.1e-14 83.6 63 49.2
Hund26628 Selenicereus undatus HOM05D006897 ORTHO05D008825 1.4e-14 83.2 63 54.0
HanXRQChr13g0388291 Helianthus annuus HOM05D006897 ORTHO05D008825 1.8e-14 82.8 63 54.0
TPR.G32809 Trifolium pratense HOM05D006897 ORTHO05D008825 1.8e-14 82.8 63 52.4
Dinv35807 Davidia involucrata HOM05D006897 ORTHO05D008825 2.4e-14 82.4 61 57.4
EL10Ac7g16667 Beta vulgaris HOM05D006897 ORTHO05D008825 3.1e-14 82.0 63 50.8
Ciclev10013772m.g Citrus clementina HOM05D006897 ORTHO05D008825 3.1e-14 82.0 63 52.4
Sed0006529 Sechium edule HOM05D006897 ORTHO05D008825 4.0e-14 81.6 63 57.1
unitig_27.g25382 Utricularia gibba HOM05D006897 ORTHO05D008825 4.0e-14 81.6 63 50.8
Migut.J00586 Erythranthe guttata HOM05D006897 ORTHO05D008825 5.2e-14 81.3 63 54.0
Duzib093G0551 Durio zibethinus HOM05D006897 ORTHO05D008825 6.9e-14 80.9 57 59.6
Lj1g0004142 Lotus japonicus HOM05D006897 ORTHO05D008825 6.9e-14 80.9 63 52.4
SGA_v2.0_scaffold40G15485 Striga asiatica HOM05D006897 ORTHO05D008825 6.9e-14 80.9 63 55.6
Lalb_Chr01g0018621 Lupinus albus HOM05D006897 ORTHO05D008825 1.2e-13 80.1 63 52.4
Medtr0050s0130 Medicago truncatula HOM05D006897 ORTHO05D008825 1.2e-13 80.1 63 50.8
Zm00001eb369960 Zea mays HOM05D006897 ORTHO05D008825 2.0e-13 79.3 68 58.8
Gorai.009G413700 Gossypium raimondii HOM05D006897 ORTHO05D008825 2.6e-13 79.0 63 55.6
Sc02g0001520 Simmondsia chinensis HOM05D006897 ORTHO05D008825 4.4e-13 78.2 63 49.2
AagrBONN_evm.TU.Sc2ySwM_228.4541 Anthoceros agrestis HOM05D006897 ORTHO05D008825 9.9e-13 77.0 69 49.3
Zm00001eb151640 Zea mays HOM05D006897 ORTHO05D008825 9.9e-13 77.0 64 57.8
Nitab4.5_0000063g0200 Nicotiana tabacum HOM05D006897 ORTHO05D008825 1.3e-12 76.6 60 55.0
AagrBONN_evm.TU.Sc2ySwM_340.262 Anthoceros agrestis HOM05D006897 ORTHO05D008825 2.9e-12 75.5 69 47.8
CsaV3_3G036130 Cucumis sativus L. HOM05D006897 ORTHO05D008825 2.9e-12 75.5 63 54.0
VMungo1383G3501 Vigna mungo HOM05D006897 ORTHO05D008825 2.9e-12 75.5 62 48.4
Phvul.001G180700 Phaseolus vulgaris HOM05D006897 ORTHO05D008825 3.8e-12 75.1 63 46.0
MELO3C009375.2 Cucumis melo HOM05D006897 ORTHO05D008825 1.4e-11 73.2 63 52.4
Pp3c2_31470 Physcomitrium patens HOM05D006897 ORTHO05D008825 1.4e-11 73.2 69 47.8
SEGI_02421 Sequoiadendron giganteum HOM05D006897 ORTHO05D008825 1.4e-11 73.2 71 45.1
AUR62026928 Chenopodium quinoa HOM05D006897 ORTHO05D008825 1.9e-11 72.8 57 50.9
Glyma.03G185300 Glycine max HOM05D006897 ORTHO05D008825 1.9e-11 72.8 63 42.9
SMO134G0180 Selaginella moellendorffii HOM05D006897 ORTHO05D008825 1.9e-11 72.8 63 46.0
AUR62041582 Chenopodium quinoa HOM05D006897 ORTHO05D008825 3.2e-11 72.0 57 50.9
Glyma.19G185800 Glycine max HOM05D006897 ORTHO05D008825 3.2e-11 72.0 63 42.9
ClCG10G019960 Citrullus lanatus HOM05D006897 ORTHO05D008825 5.4e-11 71.2 63 50.8
Mapoly0013s0170 Marchantia polymorpha HOM05D006897 ORTHO05D008825 9.3e-11 70.5 63 47.6
Sabra16G0184400 Salix brachista HOM05D004505 ORTHO05D005249 6.0e-10 67.8 40 70.0
Sabra04G0106300 Salix brachista HOM05D006897 ORTHO05D008825 7.8e-10 67.4 40 65.0
Duzib106G0008 Durio zibethinus HOM05D006897 ORTHO05D008825 1.5e-08 63.2 61 52.5
Rhsim04G0141800 Rhododendron simsii HOM05D006897 ORTHO05D008825 2.5e-08 62.4 39 61.5
SalBow3G3382 Salvia bowleyana HOM05D006897 ORTHO05D008825 4.3e-08 61.6 102 32.4
Actinidia32484 Actinidia chinensis HOM05D006897 ORTHO05D008825 2.1e-07 59.3 39 56.4
Dinv37330 Davidia involucrata HOM05D006897 ORTHO05D000180 8.1e-07 57.4 52 46.2


User provided reference genes

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