Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_010144 Vanilla planifolia HOM05D007407 ORTHO05D009298 2.6e-71 271.9 135 100.0
Ciclev10029563m.g Citrus clementina HOM05D007407 ORTHO05D009298 2.1e-44 182.6 136 64.0
Oeu044262.1 Olea europaea HOM05D007407 ORTHO05D009298 2.7e-44 182.2 132 61.4
Sc18g0003630 Simmondsia chinensis HOM05D007407 ORTHO05D009298 2.7e-44 182.2 136 63.2
Cc02_g19580 Coffea canephora HOM05D007407 ORTHO05D009298 6.0e-44 181.0 127 64.6
Atru.chr5.2418 Acer truncatum HOM05D007407 ORTHO05D009298 1.0e-43 180.3 136 64.0
CsaV3_4G000500 Cucumis sativus L. HOM05D007407 ORTHO05D009298 3.9e-43 178.3 132 62.9
AUR62008735 Chenopodium quinoa HOM05D007407 ORTHO05D009298 5.1e-43 177.9 132 61.4
Peaxi162Scf00152g00338 Petunia axillaris HOM05D007407 ORTHO05D009298 5.1e-43 177.9 132 62.9
Aqoxy6G02771 Aquilegia oxysepala HOM05D007407 ORTHO05D009298 6.6e-43 177.6 136 61.0
Potri.009G091800 Populus trichocarpa HOM05D007407 ORTHO05D009298 8.6e-43 177.2 136 61.8
TAR628G1347 Trochodendron aralioides HOM05D007407 ORTHO05D009298 8.6e-43 177.2 136 61.8
HanXRQChr16g0509111 Helianthus annuus HOM05D007407 ORTHO05D009298 1.1e-42 176.8 127 61.4
MD10G1101800 Malus domestica HOM05D007407 ORTHO05D009298 1.5e-42 176.4 136 61.0
RhsimUnG0126400 Rhododendron simsii HOM05D007407 ORTHO05D009298 1.5e-42 176.4 133 62.4
RcHm_v2.0_Chr6g0254151 Rosa chinensis HOM05D007407 ORTHO05D009298 1.5e-42 176.4 136 61.8
CAN.G13.9 Capsicum annuum HOM05D007407 ORTHO05D009298 1.9e-42 176.0 132 60.6
GSVIVG01037877001 Vitis vinifera HOM05D007407 ORTHO05D009298 1.9e-42 176.0 127 61.4
ClCG10G010580 Citrullus lanatus HOM05D007407 ORTHO05D009298 4.3e-42 174.9 136 61.8
SalBow3G4546 Salvia bowleyana HOM05D007407 ORTHO05D009298 4.3e-42 174.9 127 60.6
Actinidia34378 Actinidia chinensis HOM05D007407 ORTHO05D009298 7.3e-42 174.1 136 59.6
MSTRG.27752 Avicennia marina HOM05D007407 ORTHO05D009298 7.3e-42 174.1 132 61.4
Nn1g04637 Nelumbo nucifera HOM05D007407 ORTHO05D009298 9.5e-42 173.7 136 61.8
Sabra09G0070800 Salix brachista HOM05D007407 ORTHO05D009298 9.5e-42 173.7 136 59.6
Thecc.02G113100 Theobroma cacao HOM05D007407 ORTHO05D009298 9.5e-42 173.7 127 61.4
Hma1.2p1_1023F.1_g248940 Hydrangea macrophylla HOM05D007407 ORTHO05D009298 1.6e-41 172.9 123 63.4
Sed0024111 Sechium edule HOM05D007407 ORTHO05D009298 2.1e-41 172.6 131 59.5
CANSAT25G3533 Cannabis sativa HOM05D007407 ORTHO05D009298 6.2e-41 171.0 127 60.6
Duzib052G0893 Durio zibethinus HOM05D007407 ORTHO05D009298 6.2e-41 171.0 127 60.6
Sopen11g019840 Solanum pennellii HOM05D007407 ORTHO05D009298 6.2e-41 171.0 132 59.8
CANSAT25G2132 Cannabis sativa HOM05D007407 ORTHO05D009298 1.1e-40 170.2 127 60.6
FvH4_2g04570 Fragaria vesca HOM05D007407 ORTHO05D009298 1.8e-40 169.5 132 58.3
FAN27G0322 Fragaria x ananassa HOM05D007407 ORTHO05D009298 1.8e-40 169.5 132 59.8
QL11p032060 Quercus lobata HOM05D007407 ORTHO05D009298 1.8e-40 169.5 131 59.5
DCAR_001669 Daucus carota HOM05D007407 ORTHO05D009298 2.3e-40 169.1 127 60.6
Gohir.A03G184200 Gossypium hirsutum HOM05D007407 ORTHO05D009298 3.1e-40 168.7 127 59.8
Gohir.D02G205700 Gossypium hirsutum HOM05D007407 ORTHO05D009298 3.1e-40 168.7 127 59.8
Gorai.005G233100 Gossypium raimondii HOM05D007407 ORTHO05D009298 3.1e-40 168.7 127 59.8
CiPaw.05G014900 Carya illinoinensis HOM05D007407 ORTHO05D009298 6.8e-40 167.5 136 59.6
Lj3g0017118 Lotus japonicus HOM05D007407 ORTHO05D009298 8.9e-40 167.2 136 58.8
FAN15G3071 Fragaria x ananassa HOM05D007407 ORTHO05D009298 1.2e-39 166.8 132 59.1
Nitab4.5_0000088g0130 Nicotiana tabacum HOM05D007407 ORTHO05D009298 1.2e-39 166.8 114 65.8
Zm00001eb326460 Zea mays HOM05D007407 ORTHO05D009298 1.2e-39 166.8 132 61.4
TWI59G1341 Tripterygium wilfordii HOM05D007407 ORTHO05D009298 2.0e-39 166.0 142 59.9
TPR.G5138 Trifolium pratense HOM05D007407 ORTHO05D009298 3.4e-39 165.2 127 59.8
Cpa.g.c35560 Carica papaya HOM05D007407 ORTHO05D009298 5.8e-39 164.5 143 58.7
Migut.I00274 Erythranthe guttata HOM05D007407 ORTHO05D009298 5.8e-39 164.5 127 59.1
EL10Ac6g13315 Beta vulgaris HOM05D007407 ORTHO05D009298 9.9e-39 163.7 131 59.5
Eucgr.I01082 Eucalyptus grandis HOM05D007407 ORTHO05D009298 9.9e-39 163.7 113 63.7
Dinv42215 Davidia involucrata HOM05D007407 ORTHO05D009298 1.3e-38 163.3 137 59.9
Psat5g233480 Pisum sativum HOM05D007407 ORTHO05D009298 2.2e-38 162.5 136 58.1
arahy.Tifrunner.gnm1.ann1.2Y2YM1 Arachis hypogaea HOM05D007407 ORTHO05D009298 2.9e-38 162.2 135 56.3
Phvul.005G003200 Phaseolus vulgaris HOM05D007407 ORTHO05D009298 4.9e-38 161.4 132 57.6
arahy.Tifrunner.gnm1.ann1.D6X9Y4 Arachis hypogaea HOM05D007407 ORTHO05D009298 8.4e-38 160.6 135 55.6
Medtr0393s0040 Medicago truncatula HOM05D007407 ORTHO05D009298 1.4e-37 159.8 133 57.9
Rhsim11G0155200 Rhododendron simsii HOM05D007407 ORTHO05D009298 1.9e-37 159.5 113 63.7
Glyma.04G111400 Glycine max HOM05D007407 ORTHO05D009298 2.4e-37 159.1 136 56.6
Aa31sc211G10 Aethionema arabicum HOM05D007407 ORTHO05D009298 7.1e-37 157.5 132 54.5
Lsat_1_v5_gn_7_86121 Lactuca sativa HOM05D007407 ORTHO05D009298 1.2e-36 156.8 115 60.0
Lalb_Chr18g0048491 Lupinus albus HOM05D007407 ORTHO05D009298 6.0e-36 154.5 131 54.2
Carub.0007s0650 Capsella rubella HOM05D007407 ORTHO05D009298 7.8e-36 154.1 132 52.3
BraA01t00434Z Brassica rapa HOM05D007407 ORTHO05D009298 2.3e-35 152.5 132 52.3
SGA_v2.0_scaffold13G06621 Striga asiatica HOM05D007407 ORTHO05D009298 2.3e-35 152.5 129 54.3
Thhalv10026553m.g Eutrema salsugineum HOM05D007407 ORTHO05D009298 3.9e-35 151.8 132 51.5
CARHR242020 Cardamine hirsuta HOM05D007407 ORTHO05D009298 6.6e-35 151.0 132 52.3
Sp7g31660 Schrenkiella parvula HOM05D007407 ORTHO05D009298 6.6e-35 151.0 132 52.3
Medtr3g010320 Medicago truncatula HOM05D007407 ORTHO05D009298 1.1e-34 150.2 136 55.9
SEGI_09286 Sequoiadendron giganteum HOM05D007407 ORTHO05D009298 1.9e-34 149.4 126 54.8
Hund12642 Selenicereus undatus HOM05D007407 ORTHO05D009298 2.5e-34 149.1 101 66.3
AT4G33925 Arabidopsis thaliana HOM05D007407 ORTHO05D009298 7.3e-34 147.5 127 52.0
AL7G17500 Arabidopsis lyrata HOM05D007407 ORTHO05D009298 1.2e-33 146.7 132 50.8
Manes.07G063400 Manihot esculenta HOM05D007407 ORTHO05D009298 1.2e-33 146.7 184 43.5
Glyma.06G322800 Glycine max HOM05D007407 ORTHO05D009298 3.6e-33 145.2 114 57.9
VMungo1080G0753 Vigna mungo HOM05D007407 ORTHO05D009298 1.8e-32 142.9 109 59.6
THA.LOC104807229 Tarenaya hassleriana HOM05D007407 ORTHO05D009298 2.4e-32 142.5 105 60.0
vmacro01981 Vaccinium macrocarpon HOM05D007407 ORTHO05D009298 5.2e-32 141.4 132 51.5
Nitab4.5_0000700g0060 Nicotiana tabacum HOM05D007407 ORTHO05D009298 2.0e-31 139.4 105 58.1
C01p04860 Brassica napus HOM05D007407 ORTHO05D009298 9.9e-31 137.1 136 48.5
MD05G1094600 Malus domestica HOM05D007407 ORTHO05D009298 9.9e-31 137.1 110 60.9
Pp3c22_18210 Physcomitrium patens HOM05D007407 ORTHO05D009298 9.9e-31 137.1 129 47.3
ECA236G1324 Erigeron canadensis HOM05D007407 ORTHO05D009298 2.2e-30 136.0 98 60.2
Solyc11g044330.3 Solanum lycopersicum HOM05D007407 ORTHO05D009298 2.9e-30 135.6 97 62.9
BolC1t00470H Brassica oleracea HOM05D007407 ORTHO05D009298 1.9e-29 132.9 105 55.2
AagrBONN_evm.TU.Sc2ySwM_228.2221 Anthoceros agrestis HOM05D007407 ORTHO05D009298 4.2e-29 131.7 144 45.8
SHI05205 Sapria himalayana HOM05D007407 ORTHO05D009298 5.4e-29 131.3 96 61.5
Duzib132G0979 Durio zibethinus HOM05D007407 ORTHO05D009298 1.6e-28 129.8 125 48.8
PGSC0003DMG400023130 Solanum tuberosum HOM05D007407 ORTHO05D009298 1.7e-27 126.3 91 60.4
Mapoly0083s0061 Marchantia polymorpha HOM05D007407 ORTHO05D009298 3.3e-26 122.1 111 45.0
Cre16.g668000 Chlamydomonas reinhardtii HOM05D007407 ORTHO05D009298 6.4e-22 107.8 109 47.7
Prupe.8G139500 Prunus persica HOM05D007407 ORTHO05D009298 3.2e-21 105.5 135 45.2
CBR_g6331 Chara braunii HOM05D007407 ORTHO05D009298 7.1e-21 104.4 117 42.7
Hma1.2p1_1023F.1_g248930 Hydrangea macrophylla HOM05D007407 ORTHO05D009298 9.3e-21 104.0 126 44.4
SMO330G0043 Selaginella moellendorffii HOM05D007407 ORTHO05D009298 2.1e-20 102.8 103 47.6
Manes.07G065401 Manihot esculenta HOM05D007407 ORTHO05D009298 1.0e-19 100.5 69 58.0
MCO15G608 Micromonas commoda HOM05D007407 ORTHO05D009298 3.6e-17 92.0 132 36.4
MD00G1205200 Malus domestica HOM05D007407 ORTHO05D009298 3.4e-15 85.5 67 62.7
CBR_g37936 Chara braunii HOM05D019869 ORTHO05D028728 2.4e-13 79.3 80 47.5
CDE04G2100 Ceratophyllum demersum HOM05D004737 ORTHO05D005623 1.2e-12 77.0 70 55.7
Medtr8g072380 Medicago truncatula HOM05D007407 ORTHO05D009298 2.0e-07 59.7 64 43.8
unitig_747.g21223 Utricularia gibba HOM05D007407 ORTHO05D009298 4.5e-07 58.5 32 71.9


User provided reference genes

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