Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_010092 Vanilla planifolia HOM05D004835 ORTHO05D006046 9.2e-215 750.0 386 100.0
HPP92_010083 Vanilla planifolia HOM05D004835 ORTHO05D006046 6.4e-200 700.7 503 76.7
Os07g0530600 Oryza sativa ssp. japonica HOM05D004835 ORTHO05D006046 2.3e-141 506.1 374 71.1
MBI02_g10099_MAGBIO Magnolia biondii HOM05D004835 ORTHO05D006046 2.4e-138 496.1 389 69.4
ATR0762G046 Amborella trichopoda HOM05D004835 ORTHO05D006046 9.1e-138 494.2 369 69.4
Sabra04G0012600 Salix brachista HOM05D004835 ORTHO05D006046 1.0e-136 490.7 387 65.4
Lj1A1224G37 Lonicera japonica HOM05D004835 ORTHO05D006046 1.7e-136 490.0 385 65.7
Thecc.06G213800 Theobroma cacao HOM05D004835 ORTHO05D006046 2.9e-136 489.2 391 64.7
TAR626G1121 Trochodendron aralioides HOM05D004835 ORTHO05D006046 2.9e-136 489.2 367 68.4
Nn1g07024 Nelumbo nucifera HOM05D004835 ORTHO05D006046 3.8e-136 488.8 368 66.8
Hma1.2p1_0091F.1_g046150 Hydrangea macrophylla HOM05D004835 ORTHO05D006046 5.0e-136 488.4 367 68.7
Eucgr.D00815 Eucalyptus grandis HOM05D004835 ORTHO05D006046 8.5e-136 487.6 380 65.5
Gohir.A06G145700 Gossypium hirsutum HOM05D004835 ORTHO05D006046 8.5e-136 487.6 367 66.8
Gorai.010G176900 Gossypium raimondii HOM05D004835 ORTHO05D006046 8.5e-136 487.6 367 66.8
Prupe.4G026400 Prunus persica HOM05D004835 ORTHO05D006046 1.5e-135 486.9 379 66.5
CiPaw.10G068200 Carya illinoinensis HOM05D004835 ORTHO05D006046 3.2e-135 485.7 386 64.8
Ciclev10015558m.g Citrus clementina HOM05D004835 ORTHO05D006046 2.1e-134 483.0 390 64.9
PGR004G0955 Punica granatum HOM05D004835 ORTHO05D006046 2.1e-134 483.0 385 64.2
Potri.004G022900 Populus trichocarpa HOM05D004835 ORTHO05D006046 3.6e-134 482.3 382 64.9
COL.COLO4_31722 Corchorus olitorius HOM05D004835 ORTHO05D006046 8.0e-134 481.1 376 66.5
MELO3C002484.2 Cucumis melo HOM05D004835 ORTHO05D006046 1.0e-133 480.7 368 66.3
CsaV3_1G011070 Cucumis sativus L. HOM05D004835 ORTHO05D006046 2.3e-133 479.6 367 66.8
Manes.16G012700 Manihot esculenta HOM05D004835 ORTHO05D006046 2.3e-133 479.6 380 65.3
ECA236G4143 Erigeron canadensis HOM05D004835 ORTHO05D006046 4.0e-133 478.8 376 66.8
ClCG03G004990 Citrullus lanatus HOM05D004835 ORTHO05D006046 8.8e-133 477.6 379 65.2
Zm00001eb323140 Zea mays HOM05D004835 ORTHO05D006046 8.8e-133 477.6 366 68.6
Lsat_1_v5_gn_7_16981 Lactuca sativa HOM05D004835 ORTHO05D006046 2.0e-132 476.5 385 65.7
Aqoxy4G01996 Aquilegia oxysepala HOM05D004835 ORTHO05D006046 3.4e-132 475.7 369 67.8
QL05p075217 Quercus lobata HOM05D004835 ORTHO05D006046 5.7e-132 474.9 376 64.1
Zm00001eb106240 Zea mays HOM05D004835 ORTHO05D006046 5.7e-132 474.9 386 64.8
Atru.chr10.2145 Acer truncatum HOM05D004835 ORTHO05D006046 7.5e-132 474.6 387 63.6
PSO675G0743 Papaver somniferum HOM05D004835 ORTHO05D006046 7.5e-132 474.6 376 65.7
MD05G1340900 Malus domestica HOM05D004835 ORTHO05D006046 9.8e-132 474.2 386 63.7
vmacro03709 Vaccinium macrocarpon HOM05D004835 ORTHO05D006046 1.3e-131 473.8 373 64.9
Actinidia26949 Actinidia chinensis HOM05D004835 ORTHO05D006046 2.2e-131 473.0 378 63.0
arahy.Tifrunner.gnm1.ann1.06HJR7 Arachis hypogaea HOM05D004835 ORTHO05D006046 8.3e-131 471.1 378 63.8
Cpa.g.sc198.3 Carica papaya HOM05D004835 ORTHO05D006046 2.4e-130 469.5 377 63.4
CSS0008490 Camellia sinensis var. sinensis HOM05D004835 ORTHO05D006046 4.1e-130 468.8 389 62.7
DCAR_008123 Daucus carota HOM05D004835 ORTHO05D006046 4.1e-130 468.8 365 65.2
Cfa000278 Carpinus fangiana HOM05D004835 ORTHO05D006046 5.4e-130 468.4 397 61.2
GSVIVG01012626001 Vitis vinifera HOM05D004835 ORTHO05D006046 5.4e-130 468.4 287 77.7
CANSAT56G3094 Cannabis sativa HOM05D004835 ORTHO05D006046 7.0e-130 468.0 372 65.1
Rhsim13G0157800 Rhododendron simsii HOM05D004835 ORTHO05D006046 7.0e-130 468.0 381 62.7
TWI63G0472 Tripterygium wilfordii HOM05D004835 ORTHO05D006046 7.0e-130 468.0 367 64.9
arahy.Tifrunner.gnm1.ann1.P6UBAG Arachis hypogaea HOM05D004835 ORTHO05D006046 1.6e-129 466.8 378 62.2
Lj5g0006944 Lotus japonicus HOM05D004835 ORTHO05D006046 1.6e-129 466.8 382 61.0
HanXRQChr05g0130051 Helianthus annuus HOM05D004835 ORTHO05D006046 3.5e-129 465.7 377 66.0
Gohir.D06G151600 Gossypium hirsutum HOM05D004835 ORTHO05D006046 5.9e-129 464.9 367 64.9
MSTRG.13160 Avicennia marina HOM05D004835 ORTHO05D006046 1.0e-128 464.2 378 63.8
Nitab4.5_0003738g0050 Nicotiana tabacum HOM05D004835 ORTHO05D006046 1.0e-128 464.2 380 62.4
RcHm_v2.0_Chr5g0004011 Rosa chinensis HOM05D004835 ORTHO05D006046 2.3e-128 463.0 375 64.5
Haze_06737 Corylus avellana HOM05D004835 ORTHO05D006046 3.8e-128 462.2 428 57.5
Nitab4.5_0006795g0010 Nicotiana tabacum HOM05D004835 ORTHO05D006046 1.1e-127 460.7 380 61.8
Haze_06733 Corylus avellana HOM05D004835 ORTHO05D006046 1.9e-127 459.9 387 61.2
Glyma.10G252300 Glycine max HOM05D004835 ORTHO05D006046 1.9e-127 459.9 367 62.7
FvH4_3g02680 Fragaria vesca HOM05D004835 ORTHO05D006046 4.2e-127 458.8 375 62.9
Sopen10g001360 Solanum pennellii HOM05D004835 ORTHO05D006046 4.2e-127 458.8 393 60.6
Glyma.20G141100 Glycine max HOM05D004835 ORTHO05D006046 5.5e-127 458.4 367 62.4
Sed0001374 Sechium edule HOM05D004835 ORTHO05D006046 7.2e-127 458.0 415 58.8
Lalb_Chr02g0144591 Lupinus albus HOM05D004835 ORTHO05D006046 1.2e-126 457.2 377 61.8
PGSC0003DMG400011280 Solanum tuberosum HOM05D004835 ORTHO05D006046 1.2e-126 457.2 371 62.8
FAN25G1333 Fragaria x ananassa HOM05D004835 ORTHO05D006046 2.1e-126 456.4 375 62.7
Solyc10g005370.3 Solanum lycopersicum HOM05D004835 ORTHO05D006046 2.8e-126 456.1 395 60.8
Oeu030985.2 Olea europaea HOM05D004835 ORTHO05D006046 3.6e-126 455.7 399 61.9
EL10Ac8g19899 Beta vulgaris HOM05D004835 ORTHO05D006046 2.3e-125 453.0 372 63.2
CDE05G0674 Ceratophyllum demersum HOM05D004835 ORTHO05D006046 4.4e-124 448.7 367 63.8
Dinv17835 Davidia involucrata HOM05D004835 ORTHO05D006046 4.4e-124 448.7 287 74.6
CAN.G105.1 Capsicum annuum HOM05D004835 ORTHO05D006046 7.5e-124 448.0 391 60.6
AUR62022016 Chenopodium quinoa HOM05D004835 ORTHO05D006046 7.5e-124 448.0 382 61.8
Phvul.007G051900 Phaseolus vulgaris HOM05D004835 ORTHO05D006046 7.5e-124 448.0 367 61.3
PSO541G2305 Papaver somniferum HOM05D004835 ORTHO05D006046 9.8e-124 447.6 376 63.0
Psat6g210360 Pisum sativum HOM05D004835 ORTHO05D006046 9.8e-124 447.6 369 62.3
VMungo0720G3178 Vigna mungo HOM05D004835 ORTHO05D006046 9.8e-124 447.6 367 62.1
Ca_10985_v3 Cicer arietinum L. HOM05D004835 ORTHO05D006046 2.2e-123 446.4 368 62.8
Ca_11005_v3 Cicer arietinum L. HOM05D004835 ORTHO05D006046 2.2e-123 446.4 368 62.8
Hund21377 Selenicereus undatus HOM05D004835 ORTHO05D006046 4.9e-123 445.3 367 61.6
Duzib235G1297 Durio zibethinus HOM05D004835 ORTHO05D006046 8.3e-123 444.5 367 63.8
Medtr1g105545 Medicago truncatula HOM05D004835 ORTHO05D006046 8.3e-123 444.5 367 62.4
Cc00_g17920 Coffea canephora HOM05D004835 ORTHO05D006046 1.4e-122 443.7 287 74.2
unitig_749.g13624 Utricularia gibba HOM05D004835 ORTHO05D006046 1.8e-122 443.4 376 61.4
unitig_26.g9396 Utricularia gibba HOM05D004835 ORTHO05D006046 5.4e-122 441.8 388 60.8
Lsat_1_v5_gn_1_125320 Lactuca sativa HOM05D004835 ORTHO05D006046 7.0e-122 441.4 369 62.6
Ah.09g235350 Amaranthus hybridus HOM05D004835 ORTHO05D006046 7.8e-121 438.0 381 60.4
SGA_v2.0_scaffold49G18268 Striga asiatica HOM05D004835 ORTHO05D006046 1.5e-119 433.7 292 69.5
ECA248G0073 Erigeron canadensis HOM05D004835 ORTHO05D006046 2.8e-118 429.5 367 60.8
SalBow1G4699 Salvia bowleyana HOM05D004835 ORTHO05D006046 2.8e-118 429.5 315 67.6
HanXRQChr01g0002521 Helianthus annuus HOM05D004835 ORTHO05D006046 2.3e-117 426.4 368 60.3
Migut.H01551 Erythranthe guttata HOM05D004835 ORTHO05D006046 2.6e-116 422.9 376 59.3
Sc05g0008870 Simmondsia chinensis HOM05D004835 ORTHO05D006046 5.7e-116 421.8 337 64.4
THA.LOC104821035 Tarenaya hassleriana HOM05D004835 ORTHO05D006046 7.5e-116 421.4 395 57.2
MSTRG.14649 Avicennia marina HOM05D004835 ORTHO05D006046 8.3e-115 417.9 392 56.9
THA.LOC104812524 Tarenaya hassleriana HOM05D004835 ORTHO05D006046 1.4e-114 417.2 376 59.3
Cpa.g.sc198.4 Carica papaya HOM05D004835 ORTHO05D006046 2.7e-113 412.9 286 71.0
AL7G32900 Arabidopsis lyrata HOM05D004835 ORTHO05D006046 3.9e-112 409.1 375 57.6
Peaxi162Scf00678g00310 Petunia axillaris HOM05D004835 ORTHO05D006046 3.9e-112 409.1 382 57.9
Sp7g19300 Schrenkiella parvula HOM05D004835 ORTHO05D006046 1.9e-111 406.8 375 57.9
Carub.0007s2021 Capsella rubella HOM05D004835 ORTHO05D006046 2.5e-111 406.4 369 59.1
AT4G21210 Arabidopsis thaliana HOM05D004835 ORTHO05D006046 1.2e-110 404.1 375 57.3
Thhalv10025354m.g Eutrema salsugineum HOM05D004835 ORTHO05D006046 1.2e-110 404.1 375 57.1
Nn1g03640 Nelumbo nucifera HOM05D004835 ORTHO05D006046 2.1e-110 403.3 356 60.1
SMO147G0180 Selaginella moellendorffii HOM05D004835 ORTHO05D006046 1.1e-109 401.0 290 65.9
A01p12580 Brassica napus HOM05D004835 ORTHO05D006046 1.8e-109 400.2 375 57.1
CARHR227800 Cardamine hirsuta HOM05D004835 ORTHO05D006046 2.3e-109 399.8 375 56.5
BcaNung03833 Brassica carinata HOM05D004835 ORTHO05D006046 3.1e-109 399.4 375 56.8
C01p15150 Brassica napus HOM05D004835 ORTHO05D006046 1.5e-108 397.1 370 57.0
BolC1t01464H Brassica oleracea HOM05D004835 ORTHO05D006046 1.5e-108 397.1 370 57.0
BraA01t01201Z Brassica rapa HOM05D004835 ORTHO05D006046 1.5e-108 397.1 375 57.1
SEGI_26962 Sequoiadendron giganteum HOM05D004835 ORTHO05D006046 7.5e-108 394.8 319 62.4
BcaC09g51244 Brassica carinata HOM05D004835 ORTHO05D006046 2.9e-107 392.9 370 56.8
Lj2A274G58 Lonicera japonica HOM05D004835 ORTHO05D006046 2.9e-107 392.9 374 57.5
Carub.0003s0094 Capsella rubella HOM05D004835 ORTHO05D006046 3.7e-107 392.5 385 56.6
AL3G11040 Arabidopsis lyrata HOM05D004835 ORTHO05D006046 4.9e-107 392.1 368 59.0
Mapoly0141s0024 Marchantia polymorpha HOM05D004835 ORTHO05D006046 4.9e-107 392.1 390 53.8
Pp3c11_19190 Physcomitrium patens HOM05D004835 ORTHO05D006046 4.9e-107 392.1 373 53.1
Aa31LG6G3230 Aethionema arabicum HOM05D004835 ORTHO05D006046 6.4e-107 391.7 378 55.8
AT3G01200 Arabidopsis thaliana HOM05D004835 ORTHO05D006046 8.3e-107 391.3 368 59.0
Sp3g00900 Schrenkiella parvula HOM05D004835 ORTHO05D006046 1.4e-106 390.6 380 56.8
CARHR075840 Cardamine hirsuta HOM05D004835 ORTHO05D006046 1.9e-106 390.2 364 58.5
Thhalv10020923m.g Eutrema salsugineum HOM05D004835 ORTHO05D006046 2.3e-104 383.3 390 55.6
Hund23515 Selenicereus undatus HOM05D004835 ORTHO05D006046 2.3e-104 383.3 344 59.6
C09p75340 Brassica napus HOM05D004835 ORTHO05D006046 5.6e-103 378.6 388 55.9
BolC5t35125H Brassica oleracea HOM05D004835 ORTHO05D006046 5.6e-103 378.6 388 55.9
BcaC05g30485 Brassica carinata HOM05D004835 ORTHO05D006046 2.8e-102 376.3 379 55.4
BNapus_Darmor_BZH_scaffold_113p00010 Brassica napus HOM05D004835 ORTHO05D006046 3.6e-102 375.9 399 54.1
BraA01t04644Z Brassica rapa HOM05D004835 ORTHO05D006046 3.6e-102 375.9 399 54.4
BcaC05g30395 Brassica carinata HOM05D004835 ORTHO05D006046 1.1e-101 374.4 388 55.4
BNapus_Darmor_BZH_scaffold_97p00190 Brassica napus HOM05D004835 ORTHO05D006046 1.1e-101 374.4 399 54.1
BcaB04g21426 Brassica carinata HOM05D004835 ORTHO05D006046 3.1e-101 372.9 392 54.6
A05p44760 Brassica napus HOM05D004835 ORTHO05D006046 4.0e-101 372.5 388 55.4
BraA05t23181Z Brassica rapa HOM05D004835 ORTHO05D006046 4.0e-101 372.5 388 55.4
BolC1t05939H Brassica oleracea HOM05D004835 ORTHO05D006046 6.8e-101 371.7 395 54.2
BcaC09g47670 Brassica carinata HOM05D004835 ORTHO05D006046 4.4e-100 369.0 379 55.1
FAN21G1397 Fragaria x ananassa HOM05D004835 ORTHO05D006046 5.4e-98 362.1 286 64.3
CBR_g38977 Chara braunii HOM05D004835 ORTHO05D006046 9.5e-95 351.3 389 50.1
TPR.G5518 Trifolium pratense HOM05D004835 ORTHO05D006046 6.2e-94 348.6 366 51.9
AagrBONN_evm.TU.Sc2ySwM_368.2632 Anthoceros agrestis HOM05D004835 ORTHO05D006046 1.3e-91 340.9 354 52.0
CSS0001434 Camellia sinensis var. sinensis HOM05D004835 ORTHO05D006046 3.5e-89 332.8 301 58.5
Aa31LG5G12420 Aethionema arabicum HOM05D004835 ORTHO05D006046 1.9e-87 327.0 251 66.1
Dinv20014 Davidia involucrata HOM05D004835 ORTHO05D006046 8.1e-70 268.5 161 77.6
Cre12.g514600 Chlamydomonas reinhardtii HOM05D004835 ORTHO05D006046 9.3e-58 228.4 294 40.8
MCO14G521 Micromonas commoda HOM05D004835 ORTHO05D006046 3.7e-54 216.5 287 41.1
BolC1t05935H Brassica oleracea HOM05D004835 ORTHO05D006046 1.0e-51 208.4 164 63.4
BNapus_Darmor_BZH_scaffold_97p00140 Brassica napus HOM05D004835 ORTHO05D006046 4.2e-50 203.0 154 64.3
TPR.G4570 Trifolium pratense HOM05D004835 ORTHO05D006046 3.1e-45 186.8 257 42.4
MD10G1314400 Malus domestica HOM05D004835 ORTHO05D006046 2.8e-38 163.7 286 39.2
BolC1t05929H Brassica oleracea HOM05D004835 ORTHO05D006046 1.1e-31 141.7 187 44.4
Dinv20013 Davidia involucrata HOM05D004835 ORTHO05D006046 1.1e-21 108.6 72 68.1
Ca_29404_v3 Cicer arietinum L. HOM05D004835 ORTHO05D148401 1.4e-21 108.2 287 28.6
CANSAT64G1413 Cannabis sativa HOM05D004835 ORTHO05D006046 4.1e-21 106.7 172 38.4
Actinidia05534 Actinidia chinensis HOM05D000018 ORTHO05D001766 6.8e-16 89.4 113 50.4
Aa31LG5G12410 Aethionema arabicum HOM05D004835 ORTHO05D038187 3.7e-14 83.6 131 46.6
BolC5t35131H Brassica oleracea HOM05D004835 ORTHO05D038187 2.0e-12 77.8 56 69.6
QL10p027838 Quercus lobata HOM05D004835 ORTHO05D337120 4.4e-07 60.1 124 37.9


User provided reference genes

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