Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_010075 Vanilla planifolia HOM05D005121 ORTHO05D006115 1.3e-125 453.0 220 100.0
Oeu027963.1 Olea europaea HOM05D005121 ORTHO05D006115 1.4e-95 353.2 207 80.7
GSVIVG01003678001 Vitis vinifera HOM05D005121 ORTHO05D006115 4.2e-95 351.7 210 79.0
Duzib160G0488 Durio zibethinus HOM05D005121 ORTHO05D006115 3.5e-94 348.6 208 80.3
Gohir.D10G019900 Gossypium hirsutum HOM05D005121 ORTHO05D006115 6.0e-94 347.8 210 79.5
Gorai.011G021100 Gossypium raimondii HOM05D005121 ORTHO05D006115 1.0e-93 347.1 207 80.7
Glyma.15G066000 Glycine max HOM05D005121 ORTHO05D006115 1.7e-93 346.3 207 81.2
Gohir.A10G019000 Gossypium hirsutum HOM05D005121 ORTHO05D006115 1.7e-93 346.3 207 80.2
Ciclev10016069m.g Citrus clementina HOM05D005121 ORTHO05D006115 3.0e-93 345.5 207 80.2
VMungo0540G0293 Vigna mungo HOM05D005121 ORTHO05D006115 1.1e-92 343.6 207 79.2
Glyma.13G247800 Glycine max HOM05D005121 ORTHO05D006115 2.5e-92 342.4 206 80.1
Phvul.006G193700 Phaseolus vulgaris HOM05D005121 ORTHO05D006115 2.5e-92 342.4 207 79.2
arahy.Tifrunner.gnm1.ann1.FY8LHX Arachis hypogaea HOM05D005121 ORTHO05D006115 3.3e-92 342.0 207 78.3
COL.COLO4_31636 Corchorus olitorius HOM05D005121 ORTHO05D006115 4.3e-92 341.7 207 79.7
Dinv18977 Davidia involucrata HOM05D005121 ORTHO05D006115 4.3e-92 341.7 207 80.2
Lj6g0004146 Lotus japonicus HOM05D005121 ORTHO05D006115 7.4e-92 340.9 210 77.6
Thecc.06G202500 Theobroma cacao HOM05D005121 ORTHO05D006115 7.4e-92 340.9 210 77.6
arahy.Tifrunner.gnm1.ann1.XU4W4S Arachis hypogaea HOM05D005121 ORTHO05D006115 1.3e-91 340.1 207 77.8
Lalb_Chr18g0060031 Lupinus albus HOM05D005121 ORTHO05D006115 1.6e-91 339.7 207 78.3
Oeu030047.2 Olea europaea HOM05D005121 ORTHO05D006115 1.6e-91 339.7 207 77.8
Aqoxy7G03433 Aquilegia oxysepala HOM05D005121 ORTHO05D006115 2.1e-91 339.3 208 77.9
Sabra04G0015300 Salix brachista HOM05D005121 ORTHO05D006115 2.1e-91 339.3 209 77.0
Cc06_g18220 Coffea canephora HOM05D005121 ORTHO05D006115 2.8e-91 339.0 210 76.7
QL05p080508 Quercus lobata HOM05D005121 ORTHO05D006115 2.8e-91 339.0 206 77.2
arahy.Tifrunner.gnm1.ann1.ANU5MI Arachis hypogaea HOM05D005121 ORTHO05D006115 3.6e-91 338.6 207 77.3
CAN.G424.38 Capsicum annuum HOM05D005121 ORTHO05D006115 3.6e-91 338.6 210 76.2
MSTRG.7276 Avicennia marina HOM05D005121 ORTHO05D006115 6.2e-91 337.8 207 77.3
CiPaw.10G115700 Carya illinoinensis HOM05D005121 ORTHO05D006115 6.2e-91 337.8 208 76.9
Potri.011G040000 Populus trichocarpa HOM05D005121 ORTHO05D006115 6.2e-91 337.8 208 77.9
Ca_00225_v3 Cicer arietinum L. HOM05D005121 ORTHO05D006115 1.4e-90 336.7 207 77.8
CSS0043949 Camellia sinensis var. sinensis HOM05D005121 ORTHO05D006115 1.8e-90 336.3 208 77.9
Duzib235G0052 Durio zibethinus HOM05D005121 ORTHO05D006115 2.4e-90 335.9 207 79.2
CSS0003935 Camellia sinensis var. sinensis HOM05D005121 ORTHO05D006115 4.0e-90 335.1 208 77.4
Potri.004G026800 Populus trichocarpa HOM05D005121 ORTHO05D006115 4.0e-90 335.1 210 75.7
Manes.17G032800 Manihot esculenta HOM05D005121 ORTHO05D006115 5.3e-90 334.7 203 79.3
TPR.G19604 Trifolium pratense HOM05D005121 ORTHO05D006115 5.3e-90 334.7 210 76.2
Eucgr.D00772 Eucalyptus grandis HOM05D005121 ORTHO05D006115 1.5e-89 333.2 207 76.8
Medtr2g011480 Medicago truncatula HOM05D005121 ORTHO05D006115 1.5e-89 333.2 207 77.3
Sed0024430 Sechium edule HOM05D005121 ORTHO05D006115 2.0e-89 332.8 209 75.6
Actinidia24048 Actinidia chinensis HOM05D005121 ORTHO05D006115 2.6e-89 332.4 210 75.7
Peaxi162Scf01152g00110 Petunia axillaris HOM05D005121 ORTHO05D006115 2.6e-89 332.4 208 75.5
Sabra11G0027500 Salix brachista HOM05D005121 ORTHO05D006115 3.4e-89 332.0 208 76.9
Nn1g06832 Nelumbo nucifera HOM05D005121 ORTHO05D006115 5.8e-89 331.3 207 77.3
Nitab4.5_0000649g0190 Nicotiana tabacum HOM05D005121 ORTHO05D006115 5.8e-89 331.3 210 73.8
Psat1g209560 Pisum sativum HOM05D005121 ORTHO05D006115 5.8e-89 331.3 207 76.3
PGSC0003DMG400022347 Solanum tuberosum HOM05D005121 ORTHO05D006115 9.9e-89 330.5 207 74.9
MELO3C022396.2 Cucumis melo HOM05D005121 ORTHO05D006115 1.3e-88 330.1 209 75.1
Nitab4.5_0005620g0020 Nicotiana tabacum HOM05D005121 ORTHO05D006115 1.3e-88 330.1 206 74.8
Peaxi162Scf00047g00710 Petunia axillaris HOM05D001486 ORTHO05D004921 1.3e-88 330.1 207 74.9
ATR1132G047 Amborella trichopoda HOM05D005121 ORTHO05D006115 1.7e-88 329.7 207 76.3
CANSAT56G0975 Cannabis sativa HOM05D005121 ORTHO05D006115 1.7e-88 329.7 209 75.6
PSO210G2069 Papaver somniferum HOM05D005121 ORTHO05D006115 1.7e-88 329.7 208 76.0
DCAR_004161 Daucus carota HOM05D005121 ORTHO05D006115 2.2e-88 329.3 210 73.8
Sopen02g024200 Solanum pennellii HOM05D005121 ORTHO05D006115 2.2e-88 329.3 207 74.4
TAR627G0857 Trochodendron aralioides HOM05D005121 ORTHO05D006115 2.2e-88 329.3 206 76.7
CsaV3_6G007300 Cucumis sativus L. HOM05D005121 ORTHO05D006115 2.9e-88 328.9 209 75.1
Prupe.4G033800 Prunus persica HOM05D005121 ORTHO05D006115 3.8e-88 328.6 207 75.4
Solyc02g079400.3 Solanum lycopersicum HOM05D005121 ORTHO05D006115 3.8e-88 328.6 207 74.4
PGR031G1397 Punica granatum HOM05D005121 ORTHO05D006115 4.9e-88 328.2 207 73.9
Migut.M01229 Erythranthe guttata HOM05D005121 ORTHO05D006115 8.4e-88 327.4 207 75.8
Lj1A1216T23 Lonicera japonica HOM05D005121 ORTHO05D006115 1.1e-87 327.0 211 73.9
Rhsim02G0118100 Rhododendron simsii HOM05D005121 ORTHO05D006115 1.9e-87 326.2 207 74.9
ECA234G4718 Erigeron canadensis HOM05D005121 ORTHO05D006115 2.4e-87 325.9 208 75.5
DCAR_008096 Daucus carota HOM05D005121 ORTHO05D006115 3.2e-87 325.5 207 73.9
Hund21294 Selenicereus undatus HOM05D005121 ORTHO05D006115 3.2e-87 325.5 205 74.6
Actinidia11821 Actinidia chinensis HOM05D005121 ORTHO05D006115 4.2e-87 325.1 207 75.4
HanXRQChr12g0359441 Helianthus annuus HOM05D005121 ORTHO05D006115 7.1e-87 324.3 208 74.5
vmacro15854 Vaccinium macrocarpon HOM05D005121 ORTHO05D006115 7.1e-87 324.3 207 75.4
Manes.16G019177 Manihot esculenta HOM05D005121 ORTHO05D006115 9.3e-87 323.9 203 76.4
ClCG06G001360 Citrullus lanatus HOM05D005121 ORTHO05D006115 1.2e-86 323.6 209 73.7
ClCG09G021600 Citrullus lanatus HOM05D005121 ORTHO05D006115 1.2e-86 323.6 209 72.7
RcHm_v2.0_Chr5g0005701 Rosa chinensis HOM05D005121 ORTHO05D006115 1.2e-86 323.6 210 74.8
CsaV3_7G021490 Cucumis sativus L. HOM05D005121 ORTHO05D006115 1.6e-86 323.2 209 73.7
FvH4_3g03660 Fragaria vesca HOM05D005121 ORTHO05D006115 3.5e-86 322.0 210 74.8
FAN11G1262 Fragaria x ananassa HOM05D005121 ORTHO05D006115 3.5e-86 322.0 210 74.8
FAN16G2329 Fragaria x ananassa HOM05D005121 ORTHO05D006115 3.5e-86 322.0 210 74.8
FAN25G2418 Fragaria x ananassa HOM05D005121 ORTHO05D006115 3.5e-86 322.0 210 74.8
MD10G1305900 Malus domestica HOM05D005121 ORTHO05D006115 3.5e-86 322.0 210 74.3
AUR62012514 Chenopodium quinoa HOM05D005121 ORTHO05D006115 4.6e-86 321.6 213 72.3
MELO3C013201.2 Cucumis melo HOM05D005121 ORTHO05D006115 4.6e-86 321.6 209 73.2
FAN21G3866 Fragaria x ananassa HOM05D005121 ORTHO05D006115 4.6e-86 321.6 210 74.3
AUR62014685 Chenopodium quinoa HOM05D005121 ORTHO05D006115 6.0e-86 321.2 213 71.8
Sc24g0000680 Simmondsia chinensis HOM05D005121 ORTHO05D006115 7.9e-86 320.9 209 73.7
CDE02G1411 Ceratophyllum demersum HOM05D005121 ORTHO05D006115 1.3e-85 320.1 207 72.5
SGA_v2.0_scaffold114G31993 Striga asiatica HOM05D005121 ORTHO05D006115 1.8e-85 319.7 213 72.3
TWI38G0490 Tripterygium wilfordii HOM05D005121 ORTHO05D006115 3.9e-85 318.5 207 72.0
Cfa000313 Carpinus fangiana HOM05D005121 ORTHO05D006115 5.1e-85 318.2 202 73.3
unitig_749.g13632 Utricularia gibba HOM05D005121 ORTHO05D006115 5.1e-85 318.2 207 71.0
Ah.09g236300 Amaranthus hybridus HOM05D005121 ORTHO05D006115 1.5e-84 316.6 207 72.5
MD05G1329000 Malus domestica HOM05D005121 ORTHO05D006115 1.5e-84 316.6 207 74.9
TWI63G0506 Tripterygium wilfordii HOM05D005121 ORTHO05D006115 2.5e-84 315.8 210 71.0
Lsat_1_v5_gn_5_78441 Lactuca sativa HOM05D005121 ORTHO05D006115 3.3e-84 315.5 208 73.1
Haze_06613 Corylus avellana HOM05D005121 ORTHO05D006115 4.3e-84 315.1 202 73.3
CDE05G3522 Ceratophyllum demersum HOM05D005121 ORTHO05D006115 7.4e-84 314.3 207 72.0
unitig_26.g9381 Utricularia gibba HOM05D005121 ORTHO05D006115 1.3e-83 313.5 207 69.1
EL10Ac6g14131 Beta vulgaris HOM05D005121 ORTHO05D006115 1.6e-83 313.2 210 72.4
THA.LOC104809541 Tarenaya hassleriana HOM05D005121 ORTHO05D006115 8.1e-83 310.8 201 72.6
Os03g0279900 Oryza sativa ssp. japonica HOM05D005121 ORTHO05D006115 6.5e-80 301.2 207 68.1
Zm00001eb012710 Zea mays HOM05D005121 ORTHO05D006115 2.1e-78 296.2 205 67.8
CARHR050750 Cardamine hirsuta HOM05D005121 ORTHO05D006115 2.7e-78 295.8 212 67.5
AL2G14620 Arabidopsis lyrata HOM05D005121 ORTHO05D006115 3.5e-78 295.4 212 67.5
CARHR011610 Cardamine hirsuta HOM05D005121 ORTHO05D006115 7.9e-78 294.3 207 68.1
Zm00001eb397450 Zea mays HOM05D005121 ORTHO05D006115 1.0e-77 293.9 206 66.5
Zm00001eb397460 Zea mays HOM05D005121 ORTHO05D006115 1.0e-77 293.9 206 66.5
Zm00001eb397440 Zea mays HOM05D005121 ORTHO05D006115 3.0e-77 292.4 207 68.1
AT1G61620 Arabidopsis thaliana HOM05D005121 ORTHO05D006115 3.9e-77 292.0 210 67.6
Carub.0002s0357 Capsella rubella HOM05D005121 ORTHO05D006115 5.1e-77 291.6 210 67.6
Zm00001eb397480 Zea mays HOM05D005121 ORTHO05D006115 1.5e-76 290.0 206 65.5
Thhalv10023604m.g Eutrema salsugineum HOM05D005121 ORTHO05D006115 1.9e-76 289.7 212 66.0
Zm00001eb397470 Zea mays HOM05D005121 ORTHO05D006115 5.7e-76 288.1 206 65.5
A01p30380 Brassica napus HOM05D005121 ORTHO05D006115 7.4e-76 287.7 211 65.9
C01p38590 Brassica napus HOM05D005121 ORTHO05D006115 7.4e-76 287.7 211 65.9
BraA01t03171Z Brassica rapa HOM05D005121 ORTHO05D006115 7.4e-76 287.7 211 65.9
Aa31LG2G9240 Aethionema arabicum HOM05D005121 ORTHO05D006115 9.6e-76 287.3 210 66.7
BcaC06g31855 Brassica carinata HOM05D005121 ORTHO05D006115 1.6e-75 286.6 211 65.9
Sp2g02960 Schrenkiella parvula HOM05D005121 ORTHO05D006115 1.1e-74 283.9 210 65.2
Pp3c9_6940 Physcomitrium patens HOM05D005121 ORTHO05D006115 7.6e-73 277.7 206 65.5
Pp3c15_12040 Physcomitrium patens HOM05D005121 ORTHO05D006115 3.9e-69 265.4 207 63.3
Mapoly0029s0083 Marchantia polymorpha HOM05D005121 ORTHO05D006115 3.3e-68 262.3 209 61.2
AagrBONN_evm.TU.Sc2ySwM_344.3296 Anthoceros agrestis HOM05D005121 ORTHO05D006115 7.7e-65 251.1 186 64.0
Migut.H01530 Erythranthe guttata HOM05D005121 ORTHO05D006115 3.8e-64 248.8 201 60.7
SMO147G0402 Selaginella moellendorffii HOM05D005121 ORTHO05D006115 3.2e-63 245.7 206 58.7
Peaxi162Scf01035g00217 Petunia axillaris HOM05D005121 ORTHO05D006115 2.0e-60 236.5 181 66.3
Zm00001eb396290 Zea mays HOM05D005121 ORTHO05D006115 1.0e-53 214.2 153 66.0
Atru.chr10.2037 Acer truncatum HOM05D005121 ORTHO05D006115 1.4e-53 213.8 137 73.7
CBR_g4035 Chara braunii HOM05D005121 ORTHO05D006115 2.6e-52 209.5 214 50.0
BcaB04g20349 Brassica carinata HOM05D005121 ORTHO05D006115 2.8e-51 206.1 154 63.6
SHI00053 Sapria himalayana HOM05D005121 ORTHO05D006115 2.8e-35 152.9 130 54.6
Ah.14g088780 Amaranthus hybridus HOM05D005121 ORTHO05D006115 8.3e-35 151.4 204 45.1
CARHR260990 Cardamine hirsuta HOM05D005121 ORTHO05D006115 4.2e-31 139.0 125 55.2
Sed0008986 Sechium edule HOM05D005121 ORTHO05D006115 1.8e-29 133.7 198 42.9
HanXRQChr10g0310231 Helianthus annuus HOM05D005121 ORTHO05D006115 1.7e-19 100.5 66 71.2
Atru.chr10.2036 Acer truncatum HOM05D005121 ORTHO05D006115 4.9e-19 99.0 60 75.0
MCO09G390 Micromonas commoda HOM05D005121 ORTHO05D006115 3.0e-16 89.7 199 32.7
Cre02.g142086 Chlamydomonas reinhardtii HOM05D005121 ORTHO05D006115 5.6e-15 85.5 161 34.2
BcaB04g20348 Brassica carinata HOM05D005121 ORTHO05D006115 2.3e-13 80.1 54 70.4
Cpa.g.sc27.158 Carica papaya HOM05D005121 ORTHO05D006115 8.3e-11 71.6 46 69.6
TAR626G1242 Trochodendron aralioides HOM05D005121 ORTHO05D006115 7.3e-07 58.5 63 49.2


User provided reference genes

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