Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_010050 Vanilla planifolia HOM05D005716 ORTHO05D007885 3.6e-211 738.0 385 100.0
CsaV3_1G032590 Cucumis sativus L. HOM05D005716 ORTHO05D007885 9.1e-130 467.6 248 89.9
Eucgr.E02383 Eucalyptus grandis HOM05D005716 ORTHO05D007885 1.7e-128 463.4 249 89.2
CDE02G4127 Ceratophyllum demersum HOM05D005716 ORTHO05D007885 2.2e-128 463.0 249 89.6
Eucgr.E02408 Eucalyptus grandis HOM05D005716 ORTHO05D007885 3.8e-128 462.2 249 89.2
Rhsim07G0173200 Rhododendron simsii HOM05D005716 ORTHO05D007885 8.5e-128 461.1 259 87.3
CANSAT80G0786 Cannabis sativa HOM05D005716 ORTHO05D007885 1.1e-127 460.7 248 87.5
QL05p058825 Quercus lobata HOM05D005716 ORTHO05D007885 1.1e-127 460.7 249 88.0
MD05G1285700 Malus domestica HOM05D005716 ORTHO05D007885 1.9e-127 459.9 248 88.7
Manes.17G068800 Manihot esculenta HOM05D005716 ORTHO05D007885 1.9e-127 459.9 249 88.4
TAR627G0480 Trochodendron aralioides HOM05D005716 ORTHO05D007885 1.9e-127 459.9 249 88.0
Aqoxy4G00105 Aquilegia oxysepala HOM05D005716 ORTHO05D007885 3.2e-127 459.1 250 86.8
QL05p058849 Quercus lobata HOM05D005716 ORTHO05D007885 3.2e-127 459.1 249 87.6
Ciclev10016173m.g Citrus clementina HOM05D005716 ORTHO05D007885 4.2e-127 458.8 250 87.2
Potri.002G243500 Populus trichocarpa HOM05D005716 ORTHO05D007885 7.2e-127 458.0 249 88.0
Potri.002G243700 Populus trichocarpa HOM05D005716 ORTHO05D007885 7.2e-127 458.0 249 88.0
PGR042G3684 Punica granatum HOM05D005716 ORTHO05D007885 7.2e-127 458.0 250 87.2
TWI09G1196 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 7.2e-127 458.0 249 87.1
Nitab4.5_0005219g0060 Nicotiana tabacum HOM05D005716 ORTHO05D007885 9.4e-127 457.6 249 86.7
Migut.H01369 Erythranthe guttata HOM05D005716 ORTHO05D007885 1.2e-126 457.2 246 87.0
HanXRQChr08g0230021 Helianthus annuus HOM05D005716 ORTHO05D007885 1.6e-126 456.8 249 87.6
ECA232G4567 Erigeron canadensis HOM05D005716 ORTHO05D007885 2.1e-126 456.4 276 85.5
MBI07_g26370_MAGBIO Magnolia biondii HOM05D005716 ORTHO05D007885 2.1e-126 456.4 249 88.8
Lj1A1186G50 Lonicera japonica HOM05D005716 ORTHO05D007885 2.7e-126 456.1 249 86.3
MD10G1263700 Malus domestica HOM05D005716 ORTHO05D007885 2.7e-126 456.1 249 87.6
Atru.chr10.1272 Acer truncatum HOM05D005716 ORTHO05D007885 3.6e-126 455.7 249 85.9
Sabra02G0185400 Salix brachista HOM05D005716 ORTHO05D007885 3.6e-126 455.7 250 86.8
ATR0585G042 Amborella trichopoda HOM05D005716 ORTHO05D007885 4.7e-126 455.3 249 87.1
arahy.Tifrunner.gnm1.ann1.16PV68 Arachis hypogaea HOM05D005716 ORTHO05D007885 4.7e-126 455.3 249 87.1
arahy.Tifrunner.gnm1.ann1.MD42KV Arachis hypogaea HOM05D005716 ORTHO05D007885 4.7e-126 455.3 249 87.1
MBI07_g15285_MAGBIO Magnolia biondii HOM05D005716 ORTHO05D007885 4.7e-126 455.3 249 88.4
SalBow7G1512 Salvia bowleyana HOM05D005716 ORTHO05D007885 6.1e-126 454.9 248 85.9
Nn3g20701 Nelumbo nucifera HOM05D005716 ORTHO05D007885 8.0e-126 454.5 249 86.7
PGSC0003DMG400008287 Solanum tuberosum HOM05D005716 ORTHO05D007885 8.0e-126 454.5 250 86.0
SGA_v2.0_scaffold106G30642 Striga asiatica HOM05D005716 ORTHO05D007885 8.0e-126 454.5 247 86.2
Thecc.06G152400 Theobroma cacao HOM05D005716 ORTHO05D007885 8.0e-126 454.5 250 87.2
Peaxi162Scf00022g00310 Petunia axillaris HOM05D005716 ORTHO05D007885 1.0e-125 454.1 250 85.2
Sc05g0006370 Simmondsia chinensis HOM05D005716 ORTHO05D007885 1.0e-125 454.1 249 87.1
BolC4t27848H Brassica oleracea HOM05D005716 ORTHO05D007885 1.4e-125 453.8 249 86.7
FAN16G2159 Fragaria x ananassa HOM05D005716 ORTHO05D007885 1.4e-125 453.8 249 87.6
Prupe.4G079000 Prunus persica HOM05D005716 ORTHO05D007885 1.4e-125 453.8 249 87.6
RcHm_v2.0_Chr5g0013751 Rosa chinensis HOM05D005716 ORTHO05D007885 1.4e-125 453.8 249 87.1
C04p63810 Brassica napus HOM05D005716 ORTHO05D007885 1.8e-125 453.4 248 87.1
BraA04t18144Z Brassica rapa HOM05D005716 ORTHO05D007885 1.8e-125 453.4 248 87.1
Cc09_g09370 Coffea canephora HOM05D005716 ORTHO05D007885 1.8e-125 453.4 250 86.0
EL10Ac8g19740 Beta vulgaris HOM05D005716 ORTHO05D007885 2.3e-125 453.0 249 86.7
FvH4_3g05780 Fragaria vesca HOM05D005716 ORTHO05D007885 2.3e-125 453.0 249 87.6
FAN11G1575 Fragaria x ananassa HOM05D005716 ORTHO05D007885 2.3e-125 453.0 249 87.6
FAN21G0047 Fragaria x ananassa HOM05D005716 ORTHO05D007885 2.3e-125 453.0 249 87.6
Medtr4g096770 Medicago truncatula HOM05D005716 ORTHO05D007885 3.0e-125 452.6 247 87.0
Psat7g090160 Pisum sativum HOM05D005716 ORTHO05D007885 3.0e-125 452.6 276 85.5
CiPaw.09G125500 Carya illinoinensis HOM05D005716 ORTHO05D007885 4.0e-125 452.2 247 87.9
GSVIVG01021429001 Vitis vinifera HOM05D005716 ORTHO05D007885 4.0e-125 452.2 249 84.7
AL4G30440 Arabidopsis lyrata HOM05D005716 ORTHO05D007885 5.2e-125 451.8 249 86.7
CAN.G650.23 Capsicum annuum HOM05D005716 ORTHO05D007885 5.2e-125 451.8 250 86.0
Lsat_1_v5_gn_1_96721 Lactuca sativa HOM05D005716 ORTHO05D007885 5.2e-125 451.8 249 86.7
Sopen02g019750 Solanum pennellii HOM05D005716 ORTHO05D007885 6.8e-125 451.4 250 85.6
Duzib235G0716 Durio zibethinus HOM05D005716 ORTHO05D007885 8.8e-125 451.1 250 86.4
Lalb_Chr07g0188621 Lupinus albus HOM05D005716 ORTHO05D007885 8.8e-125 451.1 248 86.7
Ca_18267_v3 Cicer arietinum L. HOM05D005716 ORTHO05D007885 1.2e-124 450.7 250 86.4
AT2G34470 Arabidopsis thaliana HOM05D005716 ORTHO05D007885 1.5e-124 450.3 249 85.9
MSTRG.13250 Avicennia marina HOM05D005716 ORTHO05D007885 1.5e-124 450.3 247 85.8
Carub.0004s1614 Capsella rubella HOM05D005716 ORTHO05D007885 1.5e-124 450.3 249 86.3
Thhalv10017058m.g Eutrema salsugineum HOM05D005716 ORTHO05D007885 1.5e-124 450.3 247 87.0
BcaB06g28772 Brassica carinata HOM05D005716 ORTHO05D007885 2.0e-124 449.9 247 87.0
Solyc02g070670.4 Solanum lycopersicum HOM05D005716 ORTHO05D007885 2.0e-124 449.9 250 85.2
THA.LOC104812667 Tarenaya hassleriana HOM05D005716 ORTHO05D007885 2.0e-124 449.9 249 86.7
Actinidia07685 Actinidia chinensis HOM05D005716 ORTHO05D007885 3.4e-124 449.1 250 86.8
Aa31LG10G6910 Aethionema arabicum HOM05D005716 ORTHO05D007885 3.4e-124 449.1 248 85.9
PSO017G0333 Papaver somniferum HOM05D005716 ORTHO05D007885 3.4e-124 449.1 246 86.6
unitig_32.g11441 Utricularia gibba HOM05D005716 ORTHO05D007885 3.4e-124 449.1 248 84.3
COL.COLO4_31094 Corchorus olitorius HOM05D005716 ORTHO05D007885 4.4e-124 448.7 250 86.4
Dinv32271 Davidia involucrata HOM05D005716 ORTHO05D007885 4.4e-124 448.7 240 89.2
Sp4g16740 Schrenkiella parvula HOM05D005716 ORTHO05D007885 4.4e-124 448.7 247 87.0
TPR.G4903 Trifolium pratense HOM05D005716 ORTHO05D007885 4.4e-124 448.7 249 85.9
CARHR128550 Cardamine hirsuta HOM05D005716 ORTHO05D007885 5.7e-124 448.4 248 86.7
DCAR_005122 Daucus carota HOM05D005716 ORTHO05D007885 5.7e-124 448.4 249 85.9
TWI09G0986 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 9.8e-124 447.6 245 87.3
AUR62027525 Chenopodium quinoa HOM05D005716 ORTHO05D007885 1.7e-123 446.8 242 88.4
Gohir.D10G040400 Gossypium hirsutum HOM05D005716 ORTHO05D007885 2.8e-123 446.0 249 86.7
TWI53G0431 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 3.7e-123 445.7 245 87.3
Gorai.011G042600 Gossypium raimondii HOM05D005716 ORTHO05D007885 6.3e-123 444.9 249 86.3
Oeu030916.2 Olea europaea HOM05D005716 ORTHO05D007885 1.1e-122 444.1 268 80.2
VMungo0251G2847 Vigna mungo HOM05D005716 ORTHO05D007885 1.8e-122 443.4 247 86.2
Phvul.002G193800 Phaseolus vulgaris HOM05D005716 ORTHO05D007885 5.4e-122 441.8 249 84.7
Glyma.08G084800 Glycine max HOM05D005716 ORTHO05D007885 7.0e-122 441.4 249 85.1
SEGI_04817 Sequoiadendron giganteum HOM05D005716 ORTHO05D007885 4.5e-121 438.7 249 83.1
Sed0010647 Sechium edule HOM05D005716 ORTHO05D007885 1.3e-120 437.2 248 84.7
Mapoly0128s0016 Marchantia polymorpha HOM05D005716 ORTHO05D007885 3.8e-120 435.6 245 84.5
PSO478G1410 Papaver somniferum HOM05D005716 ORTHO05D007885 4.7e-118 428.7 248 83.1
MELO3C002721.2 Cucumis melo HOM05D005716 ORTHO05D007885 2.6e-116 422.9 223 91.5
Pp3c24_19130 Physcomitrium patens HOM05D005716 ORTHO05D007885 2.2e-115 419.9 239 82.4
vmacro17882 Vaccinium macrocarpon HOM05D005716 ORTHO05D007885 4.9e-115 418.7 346 64.5
Os05g0565200 Oryza sativa ssp. japonica HOM05D005716 ORTHO05D007885 1.1e-114 417.5 248 82.3
SMO353G0068 Selaginella moellendorffii HOM05D005716 ORTHO05D007885 3.1e-114 416.0 249 79.5
ClCG03G007040 Citrullus lanatus HOM05D005716 ORTHO05D007885 2.9e-112 409.5 248 80.6
Zm00001eb343840 Zea mays HOM05D005716 ORTHO05D007885 3.8e-112 409.1 227 86.8
Cpa.g.sc166.24 Carica papaya HOM05D005716 ORTHO05D007885 6.6e-112 408.3 261 77.8
AagrBONN_evm.TU.Sc2ySwM_117.3588 Anthoceros agrestis HOM05D005716 ORTHO05D007885 2.1e-110 403.3 242 79.3
CBR_g38955 Chara braunii HOM05D005716 ORTHO05D007885 4.9e-107 392.1 250 73.6
CSS0037137 Camellia sinensis var. sinensis HOM05D005716 ORTHO05D007885 8.0e-102 374.8 203 88.2
Haze_05577 Corylus avellana HOM05D005716 ORTHO05D007885 3.3e-95 352.8 190 89.5
MCO04G141 Micromonas commoda HOM05D005716 ORTHO05D007885 7.3e-95 351.7 244 69.7
Hma1.2p1_0286F.1_g114150 Hydrangea macrophylla HOM05D005716 ORTHO05D007885 2.9e-91 339.7 189 86.8
RcHm_v2.0_Chr5g0013741 Rosa chinensis HOM05D005716 ORTHO05D007885 1.8e-85 320.5 169 91.1
Nitab4.5_0001655g0090 Nicotiana tabacum HOM05D005716 ORTHO05D007885 5.2e-85 318.9 169 89.9
PSO017G6742 Papaver somniferum HOM05D005716 ORTHO05D007885 3.8e-83 312.8 168 89.3
Hund21524 Selenicereus undatus HOM05D005716 ORTHO05D007885 3.2e-82 309.7 179 84.9
A04p06350 Brassica napus HOM05D005716 ORTHO05D007885 6.2e-78 295.4 181 80.1
Gohir.A10G039600 Gossypium hirsutum HOM05D005716 ORTHO05D007885 2.4e-77 293.5 162 86.4
PRCOL_00002216 Prasinoderma coloniale HOM05D005716 ORTHO05D007885 3.1e-77 293.1 185 76.8
FAN17G1884 Fragaria x ananassa HOM05D005716 ORTHO05D007885 1.2e-73 281.2 164 84.8
FAN23G0273 Fragaria x ananassa HOM05D005716 ORTHO05D007885 3.0e-72 276.6 164 81.7
FAN25G2810 Fragaria x ananassa HOM05D005716 ORTHO05D007885 8.7e-72 275.0 164 82.9
BcaC02g09191 Brassica carinata HOM05D005716 ORTHO05D031863 2.8e-70 270.0 145 90.3
FAN02G1132 Fragaria x ananassa HOM05D005716 ORTHO05D007885 2.9e-67 260.0 213 65.7
C04p39880 Brassica napus HOM05D005716 ORTHO05D007885 4.2e-66 256.1 145 86.2
BolC4t25559H Brassica oleracea HOM05D005716 ORTHO05D007885 6.0e-65 252.3 152 82.2
BraA04t16339Z Brassica rapa HOM05D005716 ORTHO05D007885 5.1e-64 249.2 152 81.6
FAN25G0382 Fragaria x ananassa HOM05D005716 ORTHO05D007885 1.5e-63 247.7 173 71.1
AUR62030221 Chenopodium quinoa HOM05D005716 ORTHO05D007885 4.3e-63 246.1 146 79.5
RcHm_v2.0_Chr5g0013721 Rosa chinensis HOM05D005716 ORTHO05D007885 1.3e-62 244.6 154 77.9
RcHm_v2.0_Chr5g0013731 Rosa chinensis HOM05D005716 ORTHO05D007885 8.4e-59 231.9 156 75.0
Haze_26810 Corylus avellana HOM05D005716 ORTHO05D164461 5.3e-53 212.6 239 48.1
FAN02G0019 Fragaria x ananassa HOM05D005716 ORTHO05D007885 1.9e-50 204.1 151 69.5
Dinv30725 Davidia involucrata HOM05D005716 ORTHO05D007885 5.5e-50 202.6 139 74.1
MSTRG.14769 Avicennia marina HOM05D005716 ORTHO05D007885 7.4e-39 165.6 93 82.8
AUR62030223 Chenopodium quinoa HOM05D005716 ORTHO05D044022 1.8e-37 161.0 165 55.8
FAN08G0336 Fragaria x ananassa HOM05D005716 ORTHO05D044022 4.4e-31 139.8 76 90.8
arahy.Tifrunner.gnm1.ann1.8LN2Z6 Arachis hypogaea HOM05D005716 ORTHO05D087704 1.2e-28 131.7 129 56.6
VMungo1309G0118 Vigna mungo HOM05D005716 ORTHO05D437644 9.4e-26 122.1 71 80.3
CAN.G94.3 Capsicum annuum HOM05D005716 ORTHO05D115662 3.9e-24 116.7 93 62.4
Dinv30726 Davidia involucrata HOM05D005716 ORTHO05D014961 9.7e-23 112.1 59 84.7
C05p14270 Brassica napus HOM05D013073 ORTHO05D014961 1.0e-16 92.0 55 76.4
C06p00300 Brassica napus HOM05D013073 ORTHO05D014961 3.0e-16 90.5 55 74.5
BcaC08g42818 Brassica carinata HOM05D013073 ORTHO05D014961 1.4e-13 81.6 50 74.0
A04p26400 Brassica napus HOM05D005716 ORTHO05D099386 4.1e-13 80.1 44 77.3
CBR_g19923 Chara braunii HOM05D008439 ORTHO05D011311 1.7e-06 58.2 174 25.9


User provided reference genes

Program Settings