Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_010039 Vanilla planifolia HOM05D000747 ORTHO05D014617 1.1e-50 203.0 103 100.0
HPP92_010012 Vanilla planifolia HOM05D000747 ORTHO05D014617 8.3e-38 160.2 90 87.8
HPP92_015200 Vanilla planifolia HOM05D000747 ORTHO05D014617 5.4e-37 157.5 90 86.7
HPP92_009974 Vanilla planifolia HOM05D000747 ORTHO05D014617 1.5e-31 139.4 76 89.5
MBI01_g23228_MAGBIO Magnolia biondii HOM05D000747 ORTHO05D007656 3.8e-14 81.6 79 48.1
Lj1g0024972 Lotus japonicus HOM05D000747 ORTHO05D007656 6.4e-14 80.9 98 40.8
arahy.Tifrunner.gnm1.ann1.MP0EZL Arachis hypogaea HOM05D000747 ORTHO05D007656 1.4e-13 79.7 98 40.8
Medtr7g103210 Medicago truncatula HOM05D000747 ORTHO05D007656 1.4e-13 79.7 98 40.8
ATR0665G301 Amborella trichopoda HOM05D000747 ORTHO05D007656 3.2e-13 78.6 91 42.9
Nn6g35131 Nelumbo nucifera HOM05D000747 ORTHO05D007656 3.2e-13 78.6 95 44.2
Psat3g037640 Pisum sativum HOM05D000747 ORTHO05D007656 7.1e-13 77.4 98 39.8
arahy.Tifrunner.gnm1.ann1.KKMU7F Arachis hypogaea HOM05D000747 ORTHO05D007656 9.3e-13 77.0 90 43.3
Ciclev10010940m.g Citrus clementina HOM05D000747 ORTHO05D007656 2.1e-12 75.9 85 47.1
Glyma.19G189100 Glycine max HOM05D000747 ORTHO05D007656 2.7e-12 75.5 98 39.8
TAR633G1427 Trochodendron aralioides HOM05D000747 ORTHO05D007656 3.5e-12 75.1 84 44.0
Os03g0683900 Oryza sativa ssp. japonica HOM05D000747 ORTHO05D014617 4.6e-12 74.7 91 41.8
vmacro07348 Vaccinium macrocarpon HOM05D000747 ORTHO05D007656 6.0e-12 74.3 95 36.8
Carub.0005s1961 Capsella rubella HOM05D000747 ORTHO05D007656 1.3e-11 73.2 84 40.5
Phvul.001G184300 Phaseolus vulgaris HOM05D000747 ORTHO05D007656 1.3e-11 73.2 98 38.8
PGR004G0414 Punica granatum HOM05D000747 ORTHO05D007656 1.3e-11 73.2 84 38.1
Aqoxy2G01524 Aquilegia oxysepala HOM05D000747 ORTHO05D007656 1.7e-11 72.8 88 42.0
Ca_08946_v3 Cicer arietinum L. HOM05D000747 ORTHO05D007656 1.7e-11 72.8 98 38.8
TPR.G31502 Trifolium pratense HOM05D000747 ORTHO05D007656 1.7e-11 72.8 98 37.8
Potri.016G096500 Populus trichocarpa HOM05D000747 ORTHO05D007656 3.0e-11 72.0 94 42.6
Manes.08G017600 Manihot esculenta HOM05D000747 ORTHO05D007656 5.1e-11 71.2 88 39.8
Atru.chr8.1679 Acer truncatum HOM05D000747 ORTHO05D007656 6.6e-11 70.9 88 38.6
CsaV3_3G036630 Cucumis sativus L. HOM05D000747 ORTHO05D007656 6.6e-11 70.9 95 38.9
GSVIVG01033734001 Vitis vinifera HOM05D000747 ORTHO05D007656 1.1e-10 70.1 88 40.9
AT3G53090 Arabidopsis thaliana HOM05D000747 ORTHO05D007656 1.5e-10 69.7 84 39.3
Haze_19502 Corylus avellana HOM05D000747 ORTHO05D007656 1.5e-10 69.7 91 38.5
AL5G33970 Arabidopsis lyrata HOM05D000747 ORTHO05D007656 1.9e-10 69.3 84 38.1
CSS0008408 Camellia sinensis var. sinensis HOM05D000747 ORTHO05D007656 1.9e-10 69.3 85 41.2
QL07p041161 Quercus lobata HOM05D000747 ORTHO05D007656 1.9e-10 69.3 98 35.7
CSS0041176 Camellia sinensis var. sinensis HOM05D000747 ORTHO05D007656 2.5e-10 68.9 85 41.2
Cfa016498 Carpinus fangiana HOM05D000747 ORTHO05D007656 2.5e-10 68.9 91 38.5
DCAR_020792 Daucus carota HOM05D000140 ORTHO05D007656 2.5e-10 68.9 89 38.2
ECA233G1002 Erigeron canadensis HOM05D000747 ORTHO05D007656 3.3e-10 68.6 89 38.2
HanXRQChr13g0400251 Helianthus annuus HOM05D000747 ORTHO05D007656 3.3e-10 68.6 97 36.1
Dinv37370 Davidia involucrata HOM05D000747 ORTHO05D014617 4.3e-10 68.2 97 36.1
MELO3C009417.2 Cucumis melo HOM05D000747 ORTHO05D007656 9.6e-10 67.0 88 38.6
MD12G1101300 Malus domestica HOM05D000747 ORTHO05D007656 9.6e-10 67.0 92 37.0
Actinidia28937 Actinidia chinensis HOM05D002509 ORTHO05D007656 1.3e-09 66.6 88 37.5
BcaB02g08538 Brassica carinata HOM05D000747 ORTHO05D007656 1.3e-09 66.6 84 36.9
CiPaw.09G006200 Carya illinoinensis HOM05D000747 ORTHO05D007656 1.3e-09 66.6 96 36.5
A04p06290 Brassica napus HOM05D000747 ORTHO05D007656 1.6e-09 66.2 84 36.9
BraA04t16334Z Brassica rapa HOM05D000747 ORTHO05D007656 1.6e-09 66.2 84 36.9
BolC4t25555H Brassica oleracea HOM05D000747 ORTHO05D007656 2.1e-09 65.9 84 38.1
Aa31LG10G8250 Aethionema arabicum HOM05D000747 ORTHO05D007656 2.8e-09 65.5 84 38.1
CARHR162940 Cardamine hirsuta HOM05D000747 ORTHO05D007656 2.8e-09 65.5 84 35.7
Sed0020895 Sechium edule HOM05D000747 ORTHO05D007656 2.8e-09 65.5 95 36.8
BcaC02g09186 Brassica carinata HOM05D000747 ORTHO05D007656 3.6e-09 65.1 84 38.1
C04p39810 Brassica napus HOM05D000747 ORTHO05D007656 3.6e-09 65.1 84 38.1
Cpa.g.sc5.113 Carica papaya HOM05D000747 ORTHO05D007656 3.6e-09 65.1 81 40.7
ClCG10G019570 Citrullus lanatus HOM05D000747 ORTHO05D007656 3.6e-09 65.1 95 37.9
Lsat_1_v5_gn_6_29141 Lactuca sativa HOM05D000747 ORTHO05D007656 3.6e-09 65.1 85 37.6
Cc06_g04900 Coffea canephora HOM05D000747 ORTHO05D007656 4.8e-09 64.7 99 39.4
COL.COLO4_22271 Corchorus olitorius HOM05D000747 ORTHO05D007656 6.2e-09 64.3 88 37.5
Gohir.A01G211500 Gossypium hirsutum HOM05D000747 ORTHO05D007656 6.2e-09 64.3 88 39.8
Zm00001eb217270 Zea mays HOM05D000747 ORTHO05D007656 6.2e-09 64.3 88 35.2
Eucgr.A01586 Eucalyptus grandis HOM05D000747 ORTHO05D007656 1.1e-08 63.5 91 35.2
SHI27767 Sapria himalayana HOM05D000747 ORTHO05D014617 1.1e-08 63.5 85 38.8
Sc02g0001290 Simmondsia chinensis HOM05D000747 ORTHO05D007656 1.1e-08 63.5 92 35.9
CANSAT80G1343 Cannabis sativa HOM05D000747 ORTHO05D007656 1.4e-08 63.2 89 38.2
Nitab4.5_0003554g0010 Nicotiana tabacum HOM05D000747 ORTHO05D007656 1.4e-08 63.2 81 35.8
Sabra16G0100500 Salix brachista HOM05D000747 ORTHO05D007656 3.1e-08 62.0 94 38.3
THA.LOC104827502 Tarenaya hassleriana HOM05D000747 ORTHO05D007656 3.1e-08 62.0 84 33.3
TWI74G1020 Tripterygium wilfordii HOM05D000747 ORTHO05D007656 3.1e-08 62.0 91 35.2
Ah.08g211170 Amaranthus hybridus HOM05D000747 ORTHO05D007656 4.0e-08 61.6 93 34.4
Thhalv10010078m.g Eutrema salsugineum HOM05D000747 ORTHO05D007656 5.3e-08 61.2 84 35.7
Nitab4.5_0006545g0010 Nicotiana tabacum HOM05D000747 ORTHO05D007656 5.3e-08 61.2 81 35.8
Lj2C125G13 Lonicera japonica HOM05D000747 ORTHO05D007656 6.9e-08 60.8 88 36.4
MD14G1095600 Malus domestica HOM05D000747 ORTHO05D007656 6.9e-08 60.8 89 36.0
Gohir.D01G200300 Gossypium hirsutum HOM05D000747 ORTHO05D007656 9.0e-08 60.5 88 38.6
Gorai.002G245000 Gossypium raimondii HOM05D000747 ORTHO05D007656 9.0e-08 60.5 88 38.6
PSO801G0354 Papaver somniferum HOM05D000747 ORTHO05D007656 1.2e-07 60.1 90 37.8
Solyc09g008700.2 Solanum lycopersicum HOM05D000747 ORTHO05D007656 1.2e-07 60.1 88 31.8
Hma1.2p1_0564F.1_g179100 Hydrangea macrophylla HOM05D000747 ORTHO05D007656 1.5e-07 59.7 84 36.9
PSO339G4004 Papaver somniferum HOM05D000747 ORTHO05D007656 2.0e-07 59.3 90 37.8
Sp5g09230 Schrenkiella parvula HOM05D000747 ORTHO05D007656 2.0e-07 59.3 84 33.3
Prupe.7G121800 Prunus persica HOM05D000747 ORTHO05D007656 5.8e-07 57.8 87 35.6
CAN.G1830.6 Capsicum annuum HOM05D000747 ORTHO05D007656 1.3e-06 56.6 88 31.8
EL10Ac7g16731 Beta vulgaris HOM05D000747 ORTHO05D007656 1.7e-06 56.2 97 35.1
FAN09G3532 Fragaria x ananassa HOM05D000747 ORTHO05D007656 2.2e-06 55.8 90 33.3
Peaxi162Scf00500g00219 Petunia axillaris HOM05D000747 ORTHO05D007656 2.9e-06 55.5 88 30.7
Lalb_Chr01g0018491 Lupinus albus HOM05D000747 ORTHO05D007656 4.9e-06 54.7 51 51.0
AUR62037922 Chenopodium quinoa HOM05D000747 ORTHO05D007656 6.4e-06 54.3 97 33.0
FvH4_6g17370 Fragaria vesca HOM05D000747 ORTHO05D007656 6.4e-06 54.3 90 33.3
FAN05G2234 Fragaria x ananassa HOM05D000747 ORTHO05D007656 6.4e-06 54.3 90 33.3
FAN05G4185 Fragaria x ananassa HOM05D000747 ORTHO05D007656 6.4e-06 54.3 90 33.3
RcHm_v2.0_Chr3g0471541 Rosa chinensis HOM05D000747 ORTHO05D007656 8.4e-06 53.9 90 34.4


User provided reference genes

Program Settings