Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_010003 Vanilla planifolia HOM05D003337 ORTHO05D003808 1.8e-83 313.2 236 100.0
HPP92_015261 Vanilla planifolia HOM05D003337 ORTHO05D003808 1.6e-39 167.2 106 99.1
Dinv05003 Davidia involucrata HOM05D003337 ORTHO05D003808 1.9e-24 117.1 197 70.6
Cc08_g00460 Coffea canephora HOM05D003337 ORTHO05D003808 6.0e-23 112.1 197 68.5
CiPaw.08G010200 Carya illinoinensis HOM05D003337 ORTHO05D003808 1.3e-22 110.9 197 69.0
CSS0040129 Camellia sinensis var. sinensis HOM05D003337 ORTHO05D003808 1.7e-22 110.5 197 68.5
Potri.006G256400 Populus trichocarpa HOM05D003337 ORTHO05D003808 1.7e-22 110.5 197 69.0
Phvul.009G091900 Phaseolus vulgaris HOM05D003337 ORTHO05D003808 2.3e-22 110.2 197 69.0
TWI32G1054 Tripterygium wilfordii HOM05D003337 ORTHO05D003808 3.0e-22 109.8 197 68.5
ClCG05G016760 Citrullus lanatus HOM05D003337 ORTHO05D003808 1.5e-21 107.5 197 67.5
DCAR_001543 Daucus carota HOM05D003337 ORTHO05D003808 1.5e-21 107.5 197 67.0
Potri.018G025600 Populus trichocarpa HOM05D003337 ORTHO05D003808 1.5e-21 107.5 197 69.0
Glyma.04G065500 Glycine max HOM05D003337 ORTHO05D003808 2.5e-21 106.7 197 68.0
ECA246G2127 Erigeron canadensis HOM05D003337 ORTHO05D003808 3.3e-21 106.3 197 67.5
Manes.03G013300 Manihot esculenta HOM05D003337 ORTHO05D003808 5.6e-21 105.5 197 68.0
EL10Ac2g04195 Beta vulgaris HOM05D003337 ORTHO05D003808 1.2e-20 104.4 197 66.5
Peaxi162Scf00136g02012 Petunia axillaris HOM05D003337 ORTHO05D003808 1.2e-20 104.4 197 66.5
Sabra06G0200600 Salix brachista HOM05D003337 ORTHO05D003808 1.2e-20 104.4 197 68.0
Sed0015158 Sechium edule HOM05D003337 ORTHO05D003808 1.2e-20 104.4 197 66.5
MBI14_g37827_MAGBIO Magnolia biondii HOM05D003337 ORTHO05D003808 1.6e-20 104.0 196 67.9
Hma1.2p1_0243F.1_g101010 Hydrangea macrophylla HOM05D003337 ORTHO05D003808 2.1e-20 103.6 197 66.5
TWI34G0528 Tripterygium wilfordii HOM05D003337 ORTHO05D003808 2.1e-20 103.6 197 68.0
Cpa.g.sc217.15 Carica papaya HOM05D003337 ORTHO05D003808 2.8e-20 103.2 197 68.5
GSVIVG01035878001 Vitis vinifera HOM05D003337 ORTHO05D003808 2.8e-20 103.2 197 68.5
Hund25887 Selenicereus undatus HOM05D003337 ORTHO05D003808 4.7e-20 102.4 197 67.0
CAN.G130.8 Capsicum annuum HOM05D003337 ORTHO05D003808 6.2e-20 102.1 197 66.0
Nitab4.5_0002042g0010 Nicotiana tabacum HOM05D003337 ORTHO05D003808 6.2e-20 102.1 197 64.5
QL02p021300 Quercus lobata HOM05D003337 ORTHO05D003808 8.1e-20 101.7 197 67.5
Actinidia14594 Actinidia chinensis HOM05D003337 ORTHO05D003808 1.1e-19 101.3 197 66.0
SGA_v2.0_scaffold64G21955 Striga asiatica HOM05D003337 ORTHO05D003808 1.4e-19 100.9 197 52.3
Lsat_1_v5_gn_5_30121 Lactuca sativa HOM05D003337 ORTHO05D003808 1.8e-19 100.5 197 66.0
Thecc.09G022400 Theobroma cacao HOM05D003337 ORTHO05D003808 1.8e-19 100.5 197 67.5
Ciclev10007238m.g Citrus clementina HOM05D003337 ORTHO05D003808 2.3e-19 100.1 197 67.5
Duzib168G1956 Durio zibethinus HOM05D003337 ORTHO05D003808 3.1e-19 99.8 197 67.5
Haze_21497 Corylus avellana HOM05D003337 ORTHO05D003808 4.0e-19 99.4 197 67.0
Nitab4.5_0000165g0080 Nicotiana tabacum HOM05D003337 ORTHO05D003808 5.2e-19 99.0 197 67.0
Sed0024031 Sechium edule HOM05D003337 ORTHO05D003808 5.2e-19 99.0 197 66.0
HanXRQChr05g0134851 Helianthus annuus HOM05D003337 ORTHO05D003808 6.8e-19 98.6 197 67.0
Lalb_Chr23g0268451 Lupinus albus HOM05D003337 ORTHO05D003808 6.8e-19 98.6 197 66.5
PSO017G4016 Papaver somniferum HOM05D003337 ORTHO05D003808 6.8e-19 98.6 197 66.5
PSO170G2416 Papaver somniferum HOM05D003337 ORTHO05D003808 6.8e-19 98.6 197 66.5
RcHm_v2.0_Chr6g0297611 Rosa chinensis HOM05D003337 ORTHO05D003808 8.9e-19 98.2 197 66.0
arahy.Tifrunner.gnm1.ann1.C340QI Arachis hypogaea HOM05D003337 ORTHO05D003808 1.2e-18 97.8 197 66.5
arahy.Tifrunner.gnm1.ann1.EV8XFE Arachis hypogaea HOM05D003337 ORTHO05D003808 1.2e-18 97.8 197 66.5
COL.COLO4_18879 Corchorus olitorius HOM05D003337 ORTHO05D003808 1.5e-18 97.4 197 67.0
VMungo1309G0140 Vigna mungo HOM05D003337 ORTHO05D003808 1.5e-18 97.4 197 66.0
Eucgr.C01723 Eucalyptus grandis HOM05D003337 ORTHO05D003808 2.0e-18 97.1 206 53.9
Sc09g0010250 Simmondsia chinensis HOM05D003337 ORTHO05D003808 2.0e-18 97.1 197 66.0
CSS0014408 Camellia sinensis var. sinensis HOM05D003337 ORTHO05D003808 2.6e-18 96.7 197 66.5
CSS0019364 Camellia sinensis var. sinensis HOM05D003337 ORTHO05D003808 2.6e-18 96.7 197 66.5
Glyma.06G066900 Glycine max HOM05D003337 ORTHO05D003808 2.6e-18 96.7 197 66.0
Medtr3g106700 Medicago truncatula HOM05D003337 ORTHO05D003808 2.6e-18 96.7 197 66.5
CDE05G2189 Ceratophyllum demersum HOM05D003337 ORTHO05D003808 3.4e-18 96.3 197 64.5
Nn8g39563 Nelumbo nucifera HOM05D003337 ORTHO05D003808 3.4e-18 96.3 197 66.5
Zm00001eb184600 Zea mays HOM05D003337 ORTHO05D003808 4.4e-18 95.9 197 67.5
Lj1g0009523 Lotus japonicus HOM05D003337 ORTHO05D003808 5.8e-18 95.5 197 65.5
Manes.16G123500 Manihot esculenta HOM05D003337 ORTHO05D003808 5.8e-18 95.5 197 66.5
Duzib187G1394 Durio zibethinus HOM05D003337 ORTHO05D003808 9.8e-18 94.7 197 66.0
Prupe.1G482800 Prunus persica HOM05D003337 ORTHO05D003808 9.8e-18 94.7 197 66.0
SHI18538 Sapria himalayana HOM05D003337 ORTHO05D003808 1.3e-17 94.4 197 62.9
SEGI_13524 Sequoiadendron giganteum HOM05D003337 ORTHO05D003808 1.3e-17 94.4 203 66.0
FAN15G2120 Fragaria x ananassa HOM05D003337 ORTHO05D003808 2.2e-17 93.6 197 64.5
MD15G1127100 Malus domestica HOM05D003337 ORTHO05D003808 2.9e-17 93.2 197 65.0
Psat5g029560 Pisum sativum HOM05D003337 ORTHO05D003808 2.9e-17 93.2 197 66.0
FAN20G0291 Fragaria x ananassa HOM05D003337 ORTHO05D003808 3.7e-17 92.8 197 64.0
FAN24G1139 Fragaria x ananassa HOM05D003337 ORTHO05D003808 3.7e-17 92.8 197 64.0
AUR62012417 Chenopodium quinoa HOM05D003337 ORTHO05D003808 4.9e-17 92.4 197 65.5
Atru.chr7.2458 Acer truncatum HOM05D003337 ORTHO05D003808 6.4e-17 92.0 197 65.0
FAN27G2849 Fragaria x ananassa HOM05D003337 ORTHO05D003808 6.4e-17 92.0 197 64.0
TPR.G3117 Trifolium pratense HOM05D003337 ORTHO05D003808 8.3e-17 91.7 197 66.0
AUR62031541 Chenopodium quinoa HOM05D003337 ORTHO05D003808 1.4e-16 90.9 197 65.0
Gorai.009G059000 Gossypium raimondii HOM05D003337 ORTHO05D003808 1.9e-16 90.5 197 64.5
Gorai.009G059100 Gossypium raimondii HOM05D003337 ORTHO05D003808 2.4e-16 90.1 197 65.0
Aqoxy7G02409 Aquilegia oxysepala HOM05D003337 ORTHO05D003808 3.2e-16 89.7 197 66.0
CDE02G1979 Ceratophyllum demersum HOM05D003337 ORTHO05D003808 4.1e-16 89.4 197 66.5
MELO3C003713.2 Cucumis melo HOM05D003337 ORTHO05D003808 4.1e-16 89.4 197 64.5
Gohir.D05G057900 Gossypium hirsutum HOM05D003337 ORTHO05D003808 4.1e-16 89.4 197 64.5
Gohir.A05G055800 Gossypium hirsutum HOM05D003337 ORTHO05D003808 7.1e-16 88.6 197 64.0
Lalb_Chr11g0063671 Lupinus albus HOM05D003337 ORTHO05D003808 7.1e-16 88.6 197 64.0
PGR031G1540 Punica granatum HOM05D003337 ORTHO05D003808 7.1e-16 88.6 197 62.9
Nn2g12124 Nelumbo nucifera HOM05D003337 ORTHO05D003808 9.2e-16 88.2 197 65.5
Oeu012290.1 Olea europaea HOM05D003337 ORTHO05D003808 1.2e-15 87.8 197 62.4
MD08G1156500 Malus domestica HOM05D003337 ORTHO05D003808 1.6e-15 87.4 195 64.1
TAR383G0794 Trochodendron aralioides HOM05D003337 ORTHO05D003808 1.6e-15 87.4 197 62.9
CsaV3_3G046270 Cucumis sativus L. HOM05D003337 ORTHO05D003808 2.7e-15 86.7 197 64.0
Ah.16g104580 Amaranthus hybridus HOM05D003337 ORTHO05D003808 3.5e-15 86.3 197 62.9
SEGI_23839 Sequoiadendron giganteum HOM05D003337 ORTHO05D003808 3.5e-15 86.3 195 63.6
ATR0739G172 Amborella trichopoda HOM05D003337 ORTHO05D003808 4.6e-15 85.9 201 64.7
FvH4_2g28850 Fragaria vesca HOM05D003337 ORTHO05D003808 6.0e-15 85.5 197 61.9
Carub.0004s0499 Capsella rubella HOM05D003337 ORTHO05D003808 7.8e-15 85.1 197 59.4
Gohir.D05G058000 Gossypium hirsutum HOM05D003337 ORTHO05D003808 7.8e-15 85.1 197 64.0
AagrBONN_evm.TU.Sc2ySwM_344.2463 Anthoceros agrestis HOM05D003337 ORTHO05D003808 1.0e-14 84.7 203 63.1
MSTRG.26016 Avicennia marina HOM05D003337 ORTHO05D003808 1.0e-14 84.7 197 63.5
Hma1.2p1_2800F.1_g328770 Hydrangea macrophylla HOM05D003337 ORTHO05D003808 3.0e-14 83.2 251 35.5
SalBow4G0163 Salvia bowleyana HOM05D003337 ORTHO05D003808 5.1e-14 82.4 194 62.9
Ca_15750_v3 Cicer arietinum L. HOM05D003337 ORTHO05D003808 1.1e-13 81.3 45 93.3
Actinidia15665 Actinidia chinensis HOM05D003337 ORTHO05D003808 2.5e-13 80.1 45 91.1
Aa31sc102G10 Aethionema arabicum HOM05D003337 ORTHO05D003808 5.6e-13 79.0 197 59.4
Mapoly0008s0250 Marchantia polymorpha HOM05D003337 ORTHO05D003808 5.6e-13 79.0 201 62.7
Pp3c2_25330 Physcomitrium patens HOM05D003337 ORTHO05D003808 7.3e-13 78.6 201 60.2
Pp3c2_25350 Physcomitrium patens HOM05D003337 ORTHO05D003808 7.3e-13 78.6 201 60.2
Pp3c2_25380 Physcomitrium patens HOM05D003337 ORTHO05D003808 7.3e-13 78.6 201 60.2
Sabra18G0028200 Salix brachista HOM05D003337 ORTHO05D003808 1.2e-12 77.8 256 30.1
Hma1.2p1_0497F.1_g166430 Hydrangea macrophylla HOM05D003337 ORTHO05D003808 2.8e-12 76.6 222 30.2
Lalb_Chr08g0244201 Lupinus albus HOM05D003337 ORTHO05D003808 8.1e-12 75.1 44 86.4
vmacro11183 Vaccinium macrocarpon HOM05D003337 ORTHO05D003808 1.1e-11 74.7 60 58.3
CBR_g20432 Chara braunii HOM05D003337 ORTHO05D003808 2.3e-11 73.6 201 61.7
Dinv18205 Davidia involucrata HOM05D003337 ORTHO05D003808 3.1e-11 73.2 63 54.0
Os02g0613400 Oryza sativa ssp. japonica HOM05D003337 ORTHO05D003808 3.1e-11 73.2 155 71.0
Pp3c1_12560 Physcomitrium patens HOM05D003337 ORTHO05D003808 3.1e-11 73.2 201 56.2
TAR625G0257 Trochodendron aralioides HOM05D003337 ORTHO05D003808 4.0e-11 72.8 197 60.9
Rhsim02G0202500 Rhododendron simsii HOM05D003337 ORTHO05D003808 1.2e-10 71.2 197 59.9
CiPaw.07G224800 Carya illinoinensis HOM05D003337 ORTHO05D003808 2.0e-10 70.5 64 56.2
Nitab4.5_0001294g0060 Nicotiana tabacum HOM05D003337 ORTHO05D003808 2.0e-10 70.5 197 60.9
GSVIVG01015601001 Vitis vinifera HOM05D003337 ORTHO05D003808 2.0e-10 70.5 197 55.3
Nitab4.5_0004664g0060 Nicotiana tabacum HOM05D003337 ORTHO05D003808 7.6e-10 68.6 197 57.9
Eucgr.L02898 Eucalyptus grandis HOM05D003337 ORTHO05D003808 9.9e-10 68.2 45 80.0
AT2G25320 Arabidopsis thaliana HOM05D003337 ORTHO05D003808 1.3e-09 67.8 64 48.4
CSS0031612 Camellia sinensis var. sinensis HOM05D003337 ORTHO05D003808 1.7e-09 67.4 197 56.3
Lj7C724G9 Lonicera japonica HOM05D003337 ORTHO05D003808 2.2e-09 67.0 51 58.8
Dinv41471 Davidia involucrata HOM05D003337 ORTHO05D003808 2.9e-09 66.6 198 52.5
Sopen06g008090 Solanum pennellii HOM05D003337 ORTHO05D003808 6.4e-09 65.5 175 63.4
SalBow2G3508 Salvia bowleyana HOM05D003337 ORTHO05D003808 1.9e-08 63.9 73 53.4
Eucgr.L02163 Eucalyptus grandis HOM05D003337 ORTHO05D003808 2.4e-08 63.5 143 55.2
SalBow2G2138 Salvia bowleyana HOM05D003337 ORTHO05D003808 7.1e-08 62.0 74 51.4
Gohir.A05G055900 Gossypium hirsutum HOM05D003337 ORTHO05D003808 9.2e-08 61.6 46 60.9
Lalb_Chr08g0244191 Lupinus albus HOM05D003337 ORTHO05D003808 9.2e-08 61.6 50 58.0
CSS0025992 Camellia sinensis var. sinensis HOM05D003337 ORTHO05D003808 1.6e-07 60.8 197 54.8
TAR636G2033 Trochodendron aralioides HOM05D003337 ORTHO05D003808 1.6e-07 60.8 50 58.0
AL4G16700 Arabidopsis lyrata HOM05D003337 ORTHO05D003808 2.1e-07 60.5 191 55.0
Oeu053108.1 Olea europaea HOM05D003337 ORTHO05D003808 3.5e-07 59.7 190 57.9
CARHR116200 Cardamine hirsuta HOM05D003337 ORTHO05D003808 7.8e-07 58.5 60 45.0
BcaB06g28056 Brassica carinata HOM05D003337 ORTHO05D003808 1.0e-06 58.2 216 27.3
CSS0001606 Camellia sinensis var. sinensis HOM05D003337 ORTHO05D003808 1.0e-06 58.2 197 54.3
Sp4g04460 Schrenkiella parvula HOM05D003337 ORTHO05D003808 1.0e-06 58.2 174 59.2
BcaB08g35177 Brassica carinata HOM05D003337 ORTHO05D003808 1.3e-06 57.8 192 55.2
Migut.A00028 Erythranthe guttata HOM05D003337 ORTHO05D003808 1.7e-06 57.4 44 56.8
A04p19680 Brassica napus HOM05D003337 ORTHO05D003808 5.1e-06 55.8 58 43.1
BraA04t17558Z Brassica rapa HOM05D003337 ORTHO05D003808 5.1e-06 55.8 58 43.1
BraA09t40970Z Brassica rapa HOM05D003337 ORTHO05D003808 5.1e-06 55.8 175 58.3
unitig_748.g8275 Utricularia gibba HOM05D003337 ORTHO05D003808 6.6e-06 55.5 45 55.6


User provided reference genes

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