Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_009996 Vanilla planifolia HOM05D022455 ORTHO05D014617 3.5e-77 291.6 150 100.0
HPP92_009989 Vanilla planifolia HOM05D022455 ORTHO05D014617 6.9e-33 144.4 77 100.0
HPP92_009995 Vanilla planifolia HOM05D022455 ORTHO05D014617 1.5e-32 143.3 77 98.7
HPP92_010012 Vanilla planifolia HOM05D000747 ORTHO05D014617 1.5e-32 143.3 77 98.7
HPP92_010037 Vanilla planifolia HOM05D022455 ORTHO05D014617 4.5e-32 141.7 77 98.7
HPP92_009990 Vanilla planifolia HOM05D022455 ORTHO05D014617 6.9e-25 117.9 62 100.0
HPP92_009974 Vanilla planifolia HOM05D000747 ORTHO05D014617 2.1e-13 79.7 52 86.5
HPP92_015200 Vanilla planifolia HOM05D000747 ORTHO05D014617 2.3e-12 76.3 46 91.3
MBI01_g24434_MAGBIO Magnolia biondii HOM05D000747 ORTHO05D014617 1.3e-10 70.5 50 72.0
Nn6g35131 Nelumbo nucifera HOM05D000747 ORTHO05D007656 4.8e-10 68.6 70 57.1
Potri.016G096500 Populus trichocarpa HOM05D000747 ORTHO05D007656 1.1e-09 67.4 47 74.5
Atru.chr8.1679 Acer truncatum HOM05D000747 ORTHO05D007656 2.4e-09 66.2 43 79.1
Sabra16G0100500 Salix brachista HOM05D000747 ORTHO05D007656 2.4e-09 66.2 42 81.0
Manes.08G017600 Manihot esculenta HOM05D000747 ORTHO05D007656 4.1e-09 65.5 42 78.6
SGA_v2.0_scaffold277G46716 Striga asiatica HOM05D000747 ORTHO05D007656 5.3e-09 65.1 67 53.7
Haze_19502 Corylus avellana HOM05D000747 ORTHO05D007656 9.1e-09 64.3 42 78.6
EL10Ac7g16731 Beta vulgaris HOM05D000747 ORTHO05D007656 1.2e-08 63.9 41 80.5
Ah.08g211170 Amaranthus hybridus HOM05D000747 ORTHO05D007656 1.5e-08 63.5 42 78.6
CSS0008408 Camellia sinensis var. sinensis HOM05D000747 ORTHO05D007656 1.5e-08 63.5 50 70.0
CSS0041176 Camellia sinensis var. sinensis HOM05D000747 ORTHO05D007656 1.5e-08 63.5 50 70.0
Rhsim03G0085000 Rhododendron simsii HOM05D000747 ORTHO05D007656 1.5e-08 63.5 42 76.2
Cpa.g.sc5.113 Carica papaya HOM05D000747 ORTHO05D007656 2.0e-08 63.2 42 76.2
Cfa016498 Carpinus fangiana HOM05D000747 ORTHO05D007656 2.0e-08 63.2 42 76.2
Lj2C125G13 Lonicera japonica HOM05D000747 ORTHO05D007656 2.0e-08 63.2 42 76.2
Hund20720 Selenicereus undatus HOM05D000747 ORTHO05D014617 2.0e-08 63.2 45 73.3
vmacro07348 Vaccinium macrocarpon HOM05D000747 ORTHO05D007656 2.0e-08 63.2 42 76.2
GSVIVG01033734001 Vitis vinifera HOM05D000747 ORTHO05D007656 2.0e-08 63.2 42 78.6
Ciclev10010940m.g Citrus clementina HOM05D000747 ORTHO05D007656 2.6e-08 62.8 47 70.2
Dinv37370 Davidia involucrata HOM05D000747 ORTHO05D014617 2.6e-08 62.8 42 76.2
Os03g0683900 Oryza sativa ssp. japonica HOM05D000747 ORTHO05D014617 3.4e-08 62.4 49 69.4
PSO801G0354 Papaver somniferum HOM05D000747 ORTHO05D007656 3.4e-08 62.4 46 67.4
TWI74G1020 Tripterygium wilfordii HOM05D000747 ORTHO05D007656 3.4e-08 62.4 42 78.6
PGR004G0414 Punica granatum HOM05D000747 ORTHO05D007656 4.5e-08 62.0 43 74.4
TAR633G1427 Trochodendron aralioides HOM05D000747 ORTHO05D007656 4.5e-08 62.0 42 71.4
AUR62040177 Chenopodium quinoa HOM05D000747 ORTHO05D007656 7.7e-08 61.2 41 73.2
Prupe.7G121800 Prunus persica HOM05D000747 ORTHO05D007656 7.7e-08 61.2 63 54.0
AUR62037922 Chenopodium quinoa HOM05D000747 ORTHO05D007656 1.0e-07 60.8 41 75.6
Hma1.2p1_0564F.1_g179100 Hydrangea macrophylla HOM05D000747 ORTHO05D007656 1.0e-07 60.8 42 76.2
PSO339G4004 Papaver somniferum HOM05D000747 ORTHO05D007656 1.0e-07 60.8 46 67.4
QL07p041161 Quercus lobata HOM05D000747 ORTHO05D007656 1.0e-07 60.8 42 73.8
Thecc.05G077000 Theobroma cacao HOM05D000747 ORTHO05D007656 1.0e-07 60.8 50 70.0
Cc06_g04900 Coffea canephora HOM05D000747 ORTHO05D007656 1.3e-07 60.5 41 75.6
Phvul.001G184300 Phaseolus vulgaris HOM05D000747 ORTHO05D007656 1.3e-07 60.5 50 66.0
Sed0020895 Sechium edule HOM05D000747 ORTHO05D007656 1.3e-07 60.5 45 66.7
unitig_60.g25799 Utricularia gibba HOM05D000747 ORTHO05D007656 1.3e-07 60.5 57 57.9
MELO3C009417.2 Cucumis melo HOM05D000747 ORTHO05D007656 1.7e-07 60.1 43 67.4
DCAR_020792 Daucus carota HOM05D000140 ORTHO05D007656 1.7e-07 60.1 41 73.2
Gorai.002G245000 Gossypium raimondii HOM05D000747 ORTHO05D007656 1.7e-07 60.1 50 68.0
HanXRQChr13g0400251 Helianthus annuus HOM05D000747 ORTHO05D007656 1.7e-07 60.1 42 71.4
Lsat_1_v5_gn_6_29141 Lactuca sativa HOM05D000747 ORTHO05D007656 1.7e-07 60.1 42 71.4
MD14G1095600 Malus domestica HOM05D000747 ORTHO05D007656 1.7e-07 60.1 42 73.8
Sc02g0001290 Simmondsia chinensis HOM05D000747 ORTHO05D007656 1.7e-07 60.1 62 56.5
CAN.G1830.6 Capsicum annuum HOM05D000747 ORTHO05D007656 2.2e-07 59.7 50 70.0
CsaV3_3G036630 Cucumis sativus L. HOM05D000747 ORTHO05D007656 2.2e-07 59.7 45 64.4
Migut.L01736 Erythranthe guttata HOM05D000747 ORTHO05D007656 2.2e-07 59.7 67 52.2
Eucgr.A01586 Eucalyptus grandis HOM05D000747 ORTHO05D007656 2.2e-07 59.7 42 73.8
Gohir.D01G200300 Gossypium hirsutum HOM05D000747 ORTHO05D007656 2.2e-07 59.7 50 68.0
MD12G1101300 Malus domestica HOM05D000747 ORTHO05D007656 2.2e-07 59.7 46 67.4
Actinidia28937 Actinidia chinensis HOM05D002509 ORTHO05D007656 2.9e-07 59.3 42 73.8
FvH4_6g17370 Fragaria vesca HOM05D000747 ORTHO05D007656 2.9e-07 59.3 42 71.4
FAN05G2234 Fragaria x ananassa HOM05D000747 ORTHO05D007656 2.9e-07 59.3 42 71.4
FAN09G3532 Fragaria x ananassa HOM05D000747 ORTHO05D007656 2.9e-07 59.3 42 71.4
Glyma.19G189100 Glycine max HOM05D000747 ORTHO05D007656 2.9e-07 59.3 50 64.0
RcHm_v2.0_Chr3g0471541 Rosa chinensis HOM05D000747 ORTHO05D007656 2.9e-07 59.3 42 71.4
Zm00001eb217270 Zea mays HOM05D000747 ORTHO05D007656 2.9e-07 59.3 49 65.3
CANSAT80G1343 Cannabis sativa HOM05D000747 ORTHO05D007656 5.0e-07 58.5 42 69.0
CiPaw.09G006200 Carya illinoinensis HOM05D000747 ORTHO05D007656 5.0e-07 58.5 42 73.8
ECA233G1002 Erigeron canadensis HOM05D000747 ORTHO05D007656 5.0e-07 58.5 42 69.0
Peaxi162Scf00500g00219 Petunia axillaris HOM05D000747 ORTHO05D007656 5.0e-07 58.5 42 76.2
Solyc09g008700.2 Solanum lycopersicum HOM05D000747 ORTHO05D007656 5.0e-07 58.5 50 68.0
TPR.G31502 Trifolium pratense HOM05D000747 ORTHO05D007656 5.0e-07 58.5 50 64.0
ClCG10G019570 Citrullus lanatus HOM05D000747 ORTHO05D007656 8.5e-07 57.8 45 62.2
COL.COLO4_22271 Corchorus olitorius HOM05D000747 ORTHO05D007656 8.5e-07 57.8 50 66.0
FAN05G4185 Fragaria x ananassa HOM05D000747 ORTHO05D007656 8.5e-07 57.8 42 69.0
Gohir.A01G211500 Gossypium hirsutum HOM05D000747 ORTHO05D007656 8.5e-07 57.8 50 66.0
Lj1g0024972 Lotus japonicus HOM05D000747 ORTHO05D007656 8.5e-07 57.8 42 69.0
Psat3g037640 Pisum sativum HOM05D000747 ORTHO05D007656 1.1e-06 57.4 42 66.7
Thhalv10010078m.g Eutrema salsugineum HOM05D000747 ORTHO05D007656 1.4e-06 57.0 42 71.4
Ca_08946_v3 Cicer arietinum L. HOM05D000747 ORTHO05D007656 1.9e-06 56.6 42 66.7
Medtr7g103210 Medicago truncatula HOM05D000747 ORTHO05D007656 1.9e-06 56.6 42 66.7
Nitab4.5_0003554g0010 Nicotiana tabacum HOM05D000747 ORTHO05D007656 2.5e-06 56.2 49 65.3
arahy.Tifrunner.gnm1.ann1.KKMU7F Arachis hypogaea HOM05D000747 ORTHO05D007656 4.2e-06 55.5 42 69.0
Sp5g09230 Schrenkiella parvula HOM05D000747 ORTHO05D007656 4.2e-06 55.5 43 67.4
ATR0665G301 Amborella trichopoda HOM05D000747 ORTHO05D007656 5.5e-06 55.1 42 69.0
Aqoxy2G01524 Aquilegia oxysepala HOM05D000747 ORTHO05D007656 5.5e-06 55.1 46 60.9
AL5G33970 Arabidopsis lyrata HOM05D000747 ORTHO05D007656 5.5e-06 55.1 42 69.0
A04p06290 Brassica napus HOM05D000747 ORTHO05D007656 5.5e-06 55.1 50 60.0
SalBow5G3738 Salvia bowleyana HOM05D000747 ORTHO05D007656 5.5e-06 55.1 43 62.8


User provided reference genes

Program Settings