Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_009930 Vanilla planifolia HOM05D043774 ORTHO05D002206 3.5e-88 328.2 156 100.0
HPP92_009964 Vanilla planifolia HOM05D043774 ORTHO05D002206 1.1e-44 183.7 123 74.8
HPP92_021397 Vanilla planifolia HOM05D002211 ORTHO05D002206 2.4e-20 102.8 142 45.1
HPP92_024641 Vanilla planifolia HOM05D002211 ORTHO05D002206 9.7e-14 80.9 63 55.6
Os01g0914000 Oryza sativa ssp. japonica HOM05D002211 ORTHO05D002206 1.8e-12 76.6 144 38.9
MBI07_g44687_MAGBIO Magnolia biondii HOM05D002211 ORTHO05D002206 4.1e-12 75.5 145 37.9
MBI07_g35241_MAGBIO Magnolia biondii HOM05D002211 ORTHO05D002206 2.0e-11 73.2 155 36.8
CDE05G0436 Ceratophyllum demersum HOM05D002211 ORTHO05D002206 8.5e-10 67.8 144 34.0
MSTRG.18492 Avicennia marina HOM05D002211 ORTHO05D002206 3.2e-09 65.9 140 32.1
BraA02t05441Z Brassica rapa HOM05D002211 ORTHO05D002206 4.2e-09 65.5 149 33.6
SGA_v2.0_scaffold566G52949 Striga asiatica HOM05D002211 ORTHO05D002206 5.5e-09 65.1 143 32.2
TAR365G0725 Trochodendron aralioides HOM05D002211 ORTHO05D002206 5.5e-09 65.1 152 35.5
CSS0050270 Camellia sinensis var. sinensis HOM05D002211 ORTHO05D002206 7.2e-09 64.7 155 32.3
FvH4_2g17840 Fragaria vesca HOM05D002211 ORTHO05D002206 1.2e-08 63.9 147 33.3
FAN24G0249 Fragaria x ananassa HOM05D002211 ORTHO05D002206 1.2e-08 63.9 147 33.3
TAR365G1226 Trochodendron aralioides HOM05D002211 ORTHO05D002206 1.2e-08 63.9 141 38.3
Eucgr.K02089 Eucalyptus grandis HOM05D002211 ORTHO05D002206 2.1e-08 63.2 136 33.8
CDE11G1194 Ceratophyllum demersum HOM05D002211 ORTHO05D002206 2.7e-08 62.8 147 32.7
COL.COLO4_38590 Corchorus olitorius HOM05D002211 ORTHO05D002206 2.7e-08 62.8 134 32.8
Manes.12G053700 Manihot esculenta HOM05D002211 ORTHO05D002206 2.7e-08 62.8 147 31.3
Sopen04g021740 Solanum pennellii HOM05D002211 ORTHO05D002206 2.7e-08 62.8 147 32.0
PGSC0003DMG400004509 Solanum tuberosum HOM05D002211 ORTHO05D002206 2.7e-08 62.8 143 32.2
Solyc04g050790.3 Solanum lycopersicum HOM05D002211 ORTHO05D002206 3.6e-08 62.4 148 33.1
TAR362G0774 Trochodendron aralioides HOM05D002211 ORTHO05D002206 3.6e-08 62.4 159 32.7
Gohir.A07G196800 Gossypium hirsutum HOM05D002211 ORTHO05D002206 4.7e-08 62.0 139 33.8
Nn1g08275 Nelumbo nucifera HOM05D002211 ORTHO05D002206 6.1e-08 61.6 148 33.1
Os12g0416800 Oryza sativa ssp. japonica HOM05D016851 ORTHO05D020929 8.0e-08 61.2 153 32.7
Lj3g0001912 Lotus japonicus HOM05D002211 ORTHO05D002206 1.0e-07 60.8 122 36.9
RcHm_v2.0_Chr6g0282871 Rosa chinensis HOM05D002211 ORTHO05D002206 1.0e-07 60.8 147 32.7
EL10Ac4g09798 Beta vulgaris HOM05D002211 ORTHO05D002206 1.8e-07 60.1 174 31.6
BolC2t06888H Brassica oleracea HOM05D002211 ORTHO05D002206 1.8e-07 60.1 152 30.9
FAN27G0804 Fragaria x ananassa HOM05D002211 ORTHO05D002206 1.8e-07 60.1 129 34.1
HPP92_008097 Vanilla planifolia HOM05D016851 ORTHO05D020929 1.8e-07 60.1 99 39.4
MSTRG.17972 Avicennia marina HOM05D002211 ORTHO05D002206 2.3e-07 59.7 145 33.1
C02p09800 Brassica napus HOM05D002211 ORTHO05D002206 2.3e-07 59.7 153 30.7
Thhalv10014852m.g Eutrema salsugineum HOM05D002211 ORTHO05D002206 2.3e-07 59.7 156 29.5
Haze_23452 Corylus avellana HOM05D002211 ORTHO05D002206 3.0e-07 59.3 138 31.9
Gohir.D07G203200 Gossypium hirsutum HOM05D002211 ORTHO05D002206 3.0e-07 59.3 138 32.6
Actinidia23790 Actinidia chinensis HOM05D002211 ORTHO05D002206 4.0e-07 58.9 138 29.0
CDE05G1888 Ceratophyllum demersum HOM05D002211 ORTHO05D002206 4.0e-07 58.9 144 31.9
Phvul.010G031300 Phaseolus vulgaris HOM05D002211 ORTHO05D002206 4.0e-07 58.9 133 31.6
Aqoxy5G00107 Aquilegia oxysepala HOM05D002211 ORTHO05D002206 5.2e-07 58.5 166 28.9
CDE02G4254 Ceratophyllum demersum HOM05D002211 ORTHO05D002206 5.2e-07 58.5 146 31.5
DCAR_018626 Daucus carota HOM05D002211 ORTHO05D002206 5.2e-07 58.5 146 31.5
Gorai.001G228600 Gossypium raimondii HOM05D002211 ORTHO05D002206 5.2e-07 58.5 139 33.1
Nitab4.5_0004201g0020 Nicotiana tabacum HOM05D002211 ORTHO05D002206 5.2e-07 58.5 154 31.8
BcaB08g36688 Brassica carinata HOM05D002211 ORTHO05D002206 6.7e-07 58.2 154 31.2
CiPaw.14G043400 Carya illinoinensis HOM05D002211 ORTHO05D002206 6.7e-07 58.2 134 33.6
MD05G1159900 Malus domestica HOM05D002211 ORTHO05D002206 8.8e-07 57.8 147 29.3
Prupe.8G190600 Prunus persica HOM05D002211 ORTHO05D002206 8.8e-07 57.8 124 34.7
Aqoxy5G00111 Aquilegia oxysepala HOM05D002211 ORTHO05D002206 1.2e-06 57.4 141 31.9
MSTRG.21304 Avicennia marina HOM05D002211 ORTHO05D002206 1.2e-06 57.4 147 30.6
Dinv28814 Davidia involucrata HOM05D002211 ORTHO05D002206 1.2e-06 57.4 152 30.9
Nn5g27522 Nelumbo nucifera HOM05D002211 ORTHO05D002206 1.2e-06 57.4 150 30.7
CiPaw.13G055000 Carya illinoinensis HOM05D002211 ORTHO05D002206 1.5e-06 57.0 150 32.7
HPP92_000444 Vanilla planifolia HOM05D016851 ORTHO05D020929 1.5e-06 57.0 38 71.1
GSVIVG01026373001 Vitis vinifera HOM05D002211 ORTHO05D002206 1.5e-06 57.0 142 31.0
A02p04820 Brassica napus HOM05D002211 ORTHO05D002206 2.0e-06 56.6 165 28.5
FAN15G0122 Fragaria x ananassa HOM05D002211 ORTHO05D002206 2.0e-06 56.6 127 33.9
Os11g0421800 Oryza sativa ssp. japonica HOM05D016851 ORTHO05D020929 2.0e-06 56.6 183 29.5
BraA10t44184Z Brassica rapa HOM05D002211 ORTHO05D002206 2.6e-06 56.2 155 31.6
Carub.0006s1659 Capsella rubella HOM05D002211 ORTHO05D002206 2.6e-06 56.2 140 32.9
Oeu003632.1 Olea europaea HOM05D002211 ORTHO05D002206 2.6e-06 56.2 138 30.4
DCAR_012692 Daucus carota HOM05D002211 ORTHO05D002206 3.3e-06 55.8 149 30.2
Duzib138G0235 Durio zibethinus HOM05D002211 ORTHO05D002206 3.3e-06 55.8 135 31.9
Gohir.A13G102400 Gossypium hirsutum HOM05D002211 ORTHO05D002206 3.3e-06 55.8 164 29.9
PGR083G1506 Punica granatum HOM05D002211 ORTHO05D002206 3.3e-06 55.8 149 30.2
VMungo0331G1849 Vigna mungo HOM05D002211 ORTHO05D002206 3.3e-06 55.8 133 33.1
AL6G29540 Arabidopsis lyrata HOM05D002211 ORTHO05D002206 4.4e-06 55.5 149 30.9
Sp6g26000 Schrenkiella parvula HOM05D002211 ORTHO05D002206 4.4e-06 55.5 156 29.5
Thecc.01G211400 Theobroma cacao HOM05D002211 ORTHO05D002206 4.4e-06 55.5 135 31.9
Actinidia30019 Actinidia chinensis HOM05D002211 ORTHO05D002206 5.7e-06 55.1 149 31.5
CANSAT01G1044 Cannabis sativa HOM05D002211 ORTHO05D002206 5.7e-06 55.1 150 30.0
CARHR194750 Cardamine hirsuta HOM05D002211 ORTHO05D002206 5.7e-06 55.1 138 31.9
Eucgr.H00728 Eucalyptus grandis HOM05D002211 ORTHO05D002206 5.7e-06 55.1 150 32.7
Glyma.03G089800 Glycine max HOM05D002211 ORTHO05D002206 5.7e-06 55.1 130 28.5
QL09p046170 Quercus lobata HOM05D002211 ORTHO05D002206 5.7e-06 55.1 142 34.5
Cpa.g.sc51.66 Carica papaya HOM05D002211 ORTHO05D002206 7.5e-06 54.7 157 27.4
Lalb_Chr01g0022001 Lupinus albus HOM05D002211 ORTHO05D002206 7.5e-06 54.7 128 35.2
Potri.019G029600 Populus trichocarpa HOM05D002211 ORTHO05D002206 9.7e-06 54.3 178 26.4
THA.LOC104820745 Tarenaya hassleriana HOM05D002211 ORTHO05D002206 9.7e-06 54.3 155 28.4


User provided reference genes

Program Settings