Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_009916 Vanilla planifolia HOM05D004407 ORTHO05D005074 2.2e-90 335.5 158 100.0
HPP92_009915 Vanilla planifolia HOM05D004407 ORTHO05D005074 1.7e-42 176.4 151 62.3
Potri.001G338100 Populus trichocarpa HOM05D004407 ORTHO05D005074 5.0e-18 95.1 89 48.3
QL02p073303 Quercus lobata HOM05D004407 ORTHO05D005074 1.9e-17 93.2 90 46.7
QL02p073308 Quercus lobata HOM05D004407 ORTHO05D005074 1.9e-17 93.2 90 46.7
Ah.06g182110 Amaranthus hybridus HOM05D004407 ORTHO05D005074 5.6e-17 91.7 91 47.3
Gohir.A09G032000 Gossypium hirsutum HOM05D004407 ORTHO05D005074 9.5e-17 90.9 84 47.6
Sed0005342 Sechium edule HOM05D004407 ORTHO05D005074 9.5e-17 90.9 136 40.4
Gohir.D04G080420 Gossypium hirsutum HOM05D004407 ORTHO05D005074 1.6e-16 90.1 91 42.9
Gorai.012G091100 Gossypium raimondii HOM05D004407 ORTHO05D005074 1.6e-16 90.1 91 42.9
Duzib187G1586 Durio zibethinus HOM05D004407 ORTHO05D005074 2.1e-16 89.7 91 45.1
Nn3g16588 Nelumbo nucifera HOM05D004407 ORTHO05D005074 8.1e-16 87.8 90 45.6
Sed0027888 Sechium edule HOM05D004407 ORTHO05D005074 8.1e-16 87.8 86 46.5
Ca_03872_v3 Cicer arietinum L. HOM05D004407 ORTHO05D005074 1.1e-15 87.4 84 45.2
ClCG09G019590 Citrullus lanatus HOM05D004407 ORTHO05D005074 1.1e-15 87.4 114 42.1
Eucgr.J02274 Eucalyptus grandis HOM05D004407 ORTHO05D005074 1.4e-15 87.0 90 45.6
Sc03g0006940 Simmondsia chinensis HOM05D004407 ORTHO05D005074 1.4e-15 87.0 91 42.9
Sc03g0006970 Simmondsia chinensis HOM05D004407 ORTHO05D005074 1.4e-15 87.0 91 42.9
Medtr1g051195 Medicago truncatula HOM05D004407 ORTHO05D005074 1.8e-15 86.7 82 45.1
Thecc.04G026300 Theobroma cacao HOM05D004407 ORTHO05D005074 1.8e-15 86.7 89 44.9
Cc07_g00320 Coffea canephora HOM05D004407 ORTHO05D005074 2.3e-15 86.3 91 46.2
Rhsim10G0012400 Rhododendron simsii HOM05D004407 ORTHO05D005074 2.3e-15 86.3 90 45.6
CsaV3_5G026800 Cucumis sativus L. HOM05D004407 ORTHO05D005074 3.1e-15 85.9 86 45.3
Gorai.006G037000 Gossypium raimondii HOM05D004407 ORTHO05D005074 5.2e-15 85.1 84 45.2
MD09G1018600 Malus domestica HOM05D004407 ORTHO05D005074 6.8e-15 84.7 90 43.3
CAN.G473.50 Capsicum annuum HOM05D004407 ORTHO05D005074 8.9e-15 84.3 143 38.5
MBI11_g29154_MAGBIO Magnolia biondii HOM05D004407 ORTHO05D005074 8.9e-15 84.3 146 37.7
Phvul.008G156900 Phaseolus vulgaris HOM05D004407 ORTHO05D005074 8.9e-15 84.3 165 30.3
Sabra16G0218800 Salix brachista HOM05D000111 ORTHO05D000134 8.9e-15 84.3 94 44.7
Cpa.g.sc130.51 Carica papaya HOM05D004407 ORTHO05D005074 1.2e-14 84.0 91 45.1
CiPaw.03G049400 Carya illinoinensis HOM05D004407 ORTHO05D005074 1.2e-14 84.0 89 43.8
VMungo1383G1696 Vigna mungo HOM05D004407 ORTHO05D005074 1.2e-14 84.0 169 29.6
Haze_14799 Corylus avellana HOM05D002760 ORTHO05D003169 1.5e-14 83.6 108 38.0
Nn4g22470 Nelumbo nucifera HOM05D004407 ORTHO05D005074 1.5e-14 83.6 90 41.1
Prupe.3G298600 Prunus persica HOM05D004407 ORTHO05D005074 1.5e-14 83.6 90 41.1
CARHR213820 Cardamine hirsuta HOM05D004407 ORTHO05D005074 2.0e-14 83.2 108 37.0
TWI36G1179 Tripterygium wilfordii HOM05D004407 ORTHO05D005074 2.0e-14 83.2 159 34.0
Aa31LG2G5400 Aethionema arabicum HOM05D004407 ORTHO05D005074 2.6e-14 82.8 157 34.4
CSS0009144 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 2.6e-14 82.8 90 42.2
MELO3C021614.2 Cucumis melo HOM05D004407 ORTHO05D005074 2.6e-14 82.8 86 44.2
PGSC0003DMG400012626 Solanum tuberosum HOM05D004407 ORTHO05D005074 2.6e-14 82.8 86 44.2
Carub.0007s3479 Capsella rubella HOM05D004407 ORTHO05D005074 3.4e-14 82.4 109 38.5
Thhalv10028148m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 3.4e-14 82.4 108 37.0
Sed0009704 Sechium edule HOM05D004407 ORTHO05D005074 3.4e-14 82.4 132 37.1
Solyc02g093710.1 Solanum lycopersicum HOM05D004407 ORTHO05D005074 3.4e-14 82.4 86 44.2
Sopen02g038350 Solanum pennellii HOM05D004407 ORTHO05D005074 3.4e-14 82.4 86 44.2
TAR622G1038 Trochodendron aralioides HOM05D004407 ORTHO05D005074 3.4e-14 82.4 91 44.0
MSTRG.24058 Avicennia marina HOM05D004407 ORTHO05D005074 4.4e-14 82.0 84 44.0
Glyma.02G190900 Glycine max HOM05D004407 ORTHO05D005074 4.4e-14 82.0 166 30.7
PGR083G0262 Punica granatum HOM05D004407 ORTHO05D005074 4.4e-14 82.0 90 44.4
Sp7g01180 Schrenkiella parvula HOM05D004407 ORTHO05D005074 4.4e-14 82.0 108 37.0
SGA_v2.0_scaffold47G17536 Striga asiatica HOM05D004407 ORTHO05D005074 4.4e-14 82.0 95 41.1
Actinidia05950 Actinidia chinensis HOM05D004407 ORTHO05D005074 5.8e-14 81.6 90 42.2
DCAR_015072 Daucus carota HOM05D004407 ORTHO05D005074 5.8e-14 81.6 97 41.2
MD17G1019100 Malus domestica HOM05D004407 ORTHO05D005074 7.5e-14 81.3 90 41.1
Manes.15G155400 Manihot esculenta HOM05D004407 ORTHO05D005074 7.5e-14 81.3 91 41.8
Aqoxy3G01382 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 9.8e-14 80.9 91 44.0
EL10Ac4g07679 Beta vulgaris HOM05D004407 ORTHO05D005074 9.8e-14 80.9 92 42.4
Gohir.A05G342300 Gossypium hirsutum HOM05D004407 ORTHO05D005074 1.3e-13 80.5 98 39.8
TPR.G1219 Trifolium pratense HOM05D004407 ORTHO05D005074 1.3e-13 80.5 82 42.7
DCAR_015074 Daucus carota HOM05D004407 ORTHO05D005074 1.7e-13 80.1 86 43.0
COL.COLO4_29257 Corchorus olitorius HOM05D004407 ORTHO05D005074 2.2e-13 79.7 84 44.0
Psat0s1368g0080 Pisum sativum HOM05D004407 ORTHO05D005074 2.2e-13 79.7 82 40.2
TPR.G1105 Trifolium pratense HOM05D004407 ORTHO05D005074 2.2e-13 79.7 82 41.5
Potri.001G336200 Populus trichocarpa HOM05D004407 ORTHO05D005074 2.9e-13 79.3 91 40.7
Sabra16G0217100 Salix brachista HOM05D004407 ORTHO05D005074 2.9e-13 79.3 91 40.7
BolC4t26352H Brassica oleracea HOM05D004407 ORTHO05D005074 3.7e-13 79.0 108 36.1
Oeu054661.1 Olea europaea HOM05D004407 ORTHO05D005074 4.9e-13 78.6 84 42.9
HanXRQChr09g0255761 Helianthus annuus HOM05D004407 ORTHO05D005074 6.4e-13 78.2 86 43.0
Aa31LG9G940 Aethionema arabicum HOM05D004407 ORTHO05D005074 8.3e-13 77.8 119 36.1
CANSAT64G2558 Cannabis sativa HOM05D004407 ORTHO05D005074 8.3e-13 77.8 90 38.9
A04p13730 Brassica napus HOM05D004407 ORTHO05D005074 1.1e-12 77.4 108 35.2
C04p47510 Brassica napus HOM05D004407 ORTHO05D005074 1.1e-12 77.4 108 35.2
BraA04t17032Z Brassica rapa HOM05D004407 ORTHO05D005074 1.1e-12 77.4 108 35.2
CANSAT64G1834 Cannabis sativa HOM05D004407 ORTHO05D005074 1.1e-12 77.4 86 40.7
Ciclev10017684m.g Citrus clementina HOM05D004407 ORTHO05D005074 1.1e-12 77.4 84 42.9
Prupe.3G298500 Prunus persica HOM05D004407 ORTHO05D005074 1.4e-12 77.0 90 40.0
ECA238G3732 Erigeron canadensis HOM05D004407 ORTHO05D005074 2.4e-12 76.3 121 33.9
Nitab4.5_0001031g0160 Nicotiana tabacum HOM05D004407 ORTHO05D005074 2.4e-12 76.3 86 40.7
Nitab4.5_0001863g0220 Nicotiana tabacum HOM05D004407 ORTHO05D005074 2.4e-12 76.3 86 41.9
ECA238G3518 Erigeron canadensis HOM05D004407 ORTHO05D005074 3.2e-12 75.9 121 34.7
Duzib264G0535 Durio zibethinus HOM05D004407 ORTHO05D005074 7.1e-12 74.7 84 40.5
FAN14G0353 Fragaria x ananassa HOM05D004407 ORTHO05D005074 7.1e-12 74.7 90 38.9
Lsat_1_v5_gn_2_93521 Lactuca sativa HOM05D004407 ORTHO05D005074 9.2e-12 74.3 144 34.0
Migut.K01432 Erythranthe guttata HOM05D004407 ORTHO05D005074 1.2e-11 73.9 84 40.5
Thecc.04G026400 Theobroma cacao HOM05D004407 ORTHO05D005074 1.2e-11 73.9 84 39.3
THA.LOC104805351 Tarenaya hassleriana HOM05D004407 ORTHO05D005074 1.6e-11 73.6 91 38.5
Aqoxy4G01774 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 2.1e-11 73.2 87 40.2
Aqoxy5G03597 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 2.1e-11 73.2 87 40.2
BcaC04g22350 Brassica carinata HOM05D004407 ORTHO05D005074 2.1e-11 73.2 86 41.9
C09p20260 Brassica napus HOM05D006758 ORTHO05D008326 2.1e-11 73.2 86 41.9
BolC9t54931H Brassica oleracea HOM05D006758 ORTHO05D008326 2.1e-11 73.2 86 41.9
GSVIVG01003970001 Vitis vinifera HOM05D004407 ORTHO05D005074 2.7e-11 72.8 90 40.0
FvH4_6g52330 Fragaria vesca HOM05D004407 ORTHO05D005074 3.5e-11 72.4 90 38.9
TAR625G1142 Trochodendron aralioides HOM05D004407 ORTHO05D005074 3.5e-11 72.4 91 40.7
BcaB07g31285 Brassica carinata HOM05D004407 ORTHO05D005074 4.6e-11 72.0 84 41.7
Hma1.2p1_0818F.1_g223550 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 4.6e-11 72.0 84 41.7
Hma1.2p1_1484F.1_g286420 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 4.6e-11 72.0 84 40.5
A09p16650 Brassica napus HOM05D006758 ORTHO05D008326 6.0e-11 71.6 86 41.9
BraA09t37304Z Brassica rapa HOM05D006758 ORTHO05D008326 6.0e-11 71.6 86 41.9
FAN05G1079 Fragaria x ananassa HOM05D004407 ORTHO05D005074 7.8e-11 71.2 90 37.8
Hma1.2p1_0818F.1_g223510 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 7.8e-11 71.2 84 41.7
Hma1.2p1_0818F.1_g223530 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 1.3e-10 70.5 84 40.5
Hma1.2p1_1484F.1_g286386 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 1.3e-10 70.5 84 40.5
Hma1.2p1_1484F.1_g286410 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 1.3e-10 70.5 90 38.9
RcHm_v2.0_Chr2g0173921 Rosa chinensis HOM05D004407 ORTHO05D005074 1.7e-10 70.1 67 46.3
A05p02470 Brassica napus HOM05D004407 ORTHO05D005074 3.0e-10 69.3 89 42.7
THA.LOC104825308 Tarenaya hassleriana HOM05D004407 ORTHO05D005074 3.0e-10 69.3 89 37.1
Hma1.2p1_0818F.1_g223560 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 6.6e-10 68.2 84 39.3
AL7G49050 Arabidopsis lyrata HOM05D004407 ORTHO05D005074 8.6e-10 67.8 108 33.3
AT5G40690 Arabidopsis thaliana HOM05D004407 ORTHO05D005074 8.6e-10 67.8 108 34.3
Rhsim10G0012300 Rhododendron simsii HOM05D004407 ORTHO05D005074 1.1e-09 67.4 57 50.9
Migut.H00046 Erythranthe guttata HOM05D004407 ORTHO05D005074 1.5e-09 67.0 82 42.7
HanXRQChr14g0451031 Helianthus annuus HOM05D004407 ORTHO05D005074 1.5e-09 67.0 79 45.6
Hma1.2p1_0279F.1_g112130 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 1.5e-09 67.0 87 39.1
Hma1.2p1_1484F.1_g286390 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 1.5e-09 67.0 84 39.3
SEGI_17639 Sequoiadendron giganteum HOM05D050174 ORTHO05D005074 1.5e-09 67.0 92 41.3
PSO832G4071 Papaver somniferum HOM05D004407 ORTHO05D005074 1.9e-09 66.6 139 30.2
PSO063G0264 Papaver somniferum HOM05D004407 ORTHO05D005074 2.5e-09 66.2 92 35.9
BraA05t19240Z Brassica rapa HOM05D004407 ORTHO05D005074 4.3e-09 65.5 89 41.6
PSO017G7028 Papaver somniferum HOM05D004407 ORTHO05D005074 4.3e-09 65.5 92 35.9
CARHR025870 Cardamine hirsuta HOM05D004407 ORTHO05D005074 5.6e-09 65.1 84 40.5
A05p02450 Brassica napus HOM05D004407 ORTHO05D005074 7.3e-09 64.7 89 39.3
BraA05t19239Z Brassica rapa HOM05D004407 ORTHO05D005074 7.3e-09 64.7 89 39.3
SGA_v2.0_scaffold154G37145 Striga asiatica HOM05D002760 ORTHO05D003169 7.3e-09 64.7 48 56.2
C04p02940 Brassica napus HOM05D004407 ORTHO05D005074 9.5e-09 64.3 89 41.6
BolC4t21934H Brassica oleracea HOM05D004407 ORTHO05D005074 9.5e-09 64.3 89 41.6
BcaB02g07933 Brassica carinata HOM05D004407 ORTHO05D005074 1.2e-08 63.9 161 31.1
C04p02920 Brassica napus HOM05D004407 ORTHO05D005074 1.6e-08 63.5 89 39.3
BolC4t21933H Brassica oleracea HOM05D004407 ORTHO05D005074 1.6e-08 63.5 89 39.3
unitig_747.g21864 Utricularia gibba HOM05D004407 ORTHO05D005074 2.1e-08 63.2 123 35.8
TAR374G1728 Trochodendron aralioides HOM05D004407 ORTHO05D005074 3.6e-08 62.4 90 38.9
PSO407G0367 Papaver somniferum HOM05D004407 ORTHO05D005074 6.2e-08 61.6 92 34.8
Duzib187G1582 Durio zibethinus HOM05D004407 ORTHO05D005074 1.1e-07 60.8 86 33.7
PGSC0003DMG400006921 Solanum tuberosum HOM05D004407 ORTHO05D005074 1.1e-07 60.8 75 37.3
Dinv25704 Davidia involucrata HOM05D004407 ORTHO05D005074 1.8e-07 60.1 133 33.1
PGR083G0848 Punica granatum HOM05D004407 ORTHO05D005074 1.8e-07 60.1 92 37.0
PGR083G1149 Punica granatum HOM05D004407 ORTHO05D005074 1.8e-07 60.1 84 39.3
Thhalv10028030m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 2.3e-07 59.7 164 31.7
Thhalv10019315m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 5.2e-07 58.5 84 39.3
A05p02490 Brassica napus HOM05D004407 ORTHO05D005074 6.8e-07 58.2 89 34.8
BraA05t19242Z Brassica rapa HOM05D004407 ORTHO05D005074 6.8e-07 58.2 89 34.8
ECA232G1846 Erigeron canadensis HOM05D004407 ORTHO05D005074 6.8e-07 58.2 54 44.4
BcaNung02830 Brassica carinata HOM05D004407 ORTHO05D005074 8.9e-07 57.8 90 38.9
AUR62020325 Chenopodium quinoa HOM05D004407 ORTHO05D005074 1.2e-06 57.4 92 33.7
Sopen02g017070 Solanum pennellii HOM05D000413 ORTHO05D005074 1.5e-06 57.0 75 34.7
Solyc02g067935.1 Solanum lycopersicum HOM05D004407 ORTHO05D005074 5.8e-06 55.1 73 34.2


User provided reference genes

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