Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_009915 Vanilla planifolia HOM05D004407 ORTHO05D005074 6.3e-82 307.4 153 100.0
HPP92_009916 Vanilla planifolia HOM05D004407 ORTHO05D005074 4.1e-41 171.8 151 62.3
Potri.001G338100 Populus trichocarpa HOM05D004407 ORTHO05D005074 1.2e-16 90.5 84 54.8
QL02p073303 Quercus lobata HOM05D004407 ORTHO05D005074 8.6e-15 84.3 84 48.8
QL02p073308 Quercus lobata HOM05D004407 ORTHO05D005074 8.6e-15 84.3 84 48.8
Duzib187G1586 Durio zibethinus HOM05D004407 ORTHO05D005074 1.1e-14 84.0 100 48.0
Medtr1g051195 Medicago truncatula HOM05D004407 ORTHO05D005074 1.1e-14 84.0 120 39.2
Ah.06g182110 Amaranthus hybridus HOM05D004407 ORTHO05D005074 1.5e-14 83.6 84 48.8
Gohir.D04G080420 Gossypium hirsutum HOM05D004407 ORTHO05D005074 1.5e-14 83.6 100 45.0
Gorai.012G091100 Gossypium raimondii HOM05D004407 ORTHO05D005074 1.5e-14 83.6 100 45.0
Cc07_g00320 Coffea canephora HOM05D004407 ORTHO05D005074 1.9e-14 83.2 82 52.4
MD09G1018600 Malus domestica HOM05D004407 ORTHO05D005074 1.9e-14 83.2 84 46.4
Gohir.A09G032000 Gossypium hirsutum HOM05D004407 ORTHO05D005074 2.5e-14 82.8 88 50.0
CAN.G473.50 Capsicum annuum HOM05D004407 ORTHO05D005074 3.3e-14 82.4 100 45.0
Prupe.3G298600 Prunus persica HOM05D004407 ORTHO05D005074 3.3e-14 82.4 84 45.2
Ciclev10017684m.g Citrus clementina HOM05D004407 ORTHO05D005074 4.3e-14 82.0 84 48.8
CiPaw.03G049400 Carya illinoinensis HOM05D004407 ORTHO05D005074 5.6e-14 81.6 84 46.4
ClCG09G019590 Citrullus lanatus HOM05D004407 ORTHO05D005074 5.6e-14 81.6 116 41.4
PGSC0003DMG400012626 Solanum tuberosum HOM05D004407 ORTHO05D005074 5.6e-14 81.6 84 48.8
TWI36G1179 Tripterygium wilfordii HOM05D004407 ORTHO05D005074 5.6e-14 81.6 84 47.6
Aa31LG9G940 Aethionema arabicum HOM05D004407 ORTHO05D005074 9.5e-14 80.9 99 44.4
CSS0009144 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 9.5e-14 80.9 84 46.4
Glyma.02G190900 Glycine max HOM05D004407 ORTHO05D005074 9.5e-14 80.9 167 32.9
Sed0005342 Sechium edule HOM05D004407 ORTHO05D005074 9.5e-14 80.9 116 40.5
Solyc02g093710.1 Solanum lycopersicum HOM05D004407 ORTHO05D005074 9.5e-14 80.9 84 48.8
Sopen02g038350 Solanum pennellii HOM05D004407 ORTHO05D005074 9.5e-14 80.9 84 48.8
Thecc.04G026300 Theobroma cacao HOM05D004407 ORTHO05D005074 9.5e-14 80.9 100 46.0
Eucgr.J02274 Eucalyptus grandis HOM05D004407 ORTHO05D005074 1.2e-13 80.5 85 47.1
Ca_03872_v3 Cicer arietinum L. HOM05D004407 ORTHO05D005074 1.6e-13 80.1 85 48.2
CsaV3_5G026800 Cucumis sativus L. HOM05D004407 ORTHO05D005074 1.6e-13 80.1 120 40.8
Gorai.006G037000 Gossypium raimondii HOM05D004407 ORTHO05D005074 1.6e-13 80.1 88 48.9
Phvul.008G156900 Phaseolus vulgaris HOM05D004407 ORTHO05D005074 2.1e-13 79.7 167 31.1
Carub.0007s3479 Capsella rubella HOM05D004407 ORTHO05D005074 2.8e-13 79.3 84 47.6
COL.COLO4_29257 Corchorus olitorius HOM05D004407 ORTHO05D005074 2.8e-13 79.3 84 48.8
MSTRG.24058 Avicennia marina HOM05D004407 ORTHO05D005074 3.6e-13 79.0 84 46.4
Nn3g16588 Nelumbo nucifera HOM05D004407 ORTHO05D005074 3.6e-13 79.0 84 47.6
TAR622G1038 Trochodendron aralioides HOM05D004407 ORTHO05D005074 3.6e-13 79.0 84 48.8
CARHR213820 Cardamine hirsuta HOM05D004407 ORTHO05D005074 4.7e-13 78.6 84 47.6
MELO3C021614.2 Cucumis melo HOM05D004407 ORTHO05D005074 4.7e-13 78.6 84 48.8
Nitab4.5_0001031g0160 Nicotiana tabacum HOM05D004407 ORTHO05D005074 4.7e-13 78.6 84 47.6
Cpa.g.sc130.51 Carica papaya HOM05D004407 ORTHO05D005074 6.2e-13 78.2 85 49.4
Thhalv10028148m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 6.2e-13 78.2 84 47.6
Oeu054661.1 Olea europaea HOM05D004407 ORTHO05D005074 8.1e-13 77.8 84 46.4
Sed0027888 Sechium edule HOM05D004407 ORTHO05D005074 8.1e-13 77.8 82 50.0
Sp7g01180 Schrenkiella parvula HOM05D004407 ORTHO05D005074 1.1e-12 77.4 84 46.4
Sed0009704 Sechium edule HOM05D004407 ORTHO05D005074 1.1e-12 77.4 118 39.8
Sabra16G0218800 Salix brachista HOM05D000111 ORTHO05D000134 1.8e-12 76.6 84 50.0
MD17G1019100 Malus domestica HOM05D004407 ORTHO05D005074 2.3e-12 76.3 84 44.0
THA.LOC104805351 Tarenaya hassleriana HOM05D004407 ORTHO05D005074 2.3e-12 76.3 84 47.6
Nn4g22470 Nelumbo nucifera HOM05D004407 ORTHO05D005074 3.1e-12 75.9 84 45.2
CANSAT64G2558 Cannabis sativa HOM05D004407 ORTHO05D005074 4.0e-12 75.5 84 44.0
Haze_14799 Corylus avellana HOM05D002760 ORTHO05D003169 4.0e-12 75.5 84 45.2
Migut.K01432 Erythranthe guttata HOM05D004407 ORTHO05D005074 4.0e-12 75.5 105 42.9
Gohir.A05G342300 Gossypium hirsutum HOM05D004407 ORTHO05D005074 4.0e-12 75.5 81 46.9
Nitab4.5_0001863g0220 Nicotiana tabacum HOM05D004407 ORTHO05D005074 4.0e-12 75.5 84 47.6
SGA_v2.0_scaffold47G17536 Striga asiatica HOM05D004407 ORTHO05D005074 4.0e-12 75.5 141 34.0
VMungo1383G1696 Vigna mungo HOM05D004407 ORTHO05D005074 4.0e-12 75.5 161 34.8
BolC4t26352H Brassica oleracea HOM05D004407 ORTHO05D005074 5.2e-12 75.1 84 46.4
Manes.15G155400 Manihot esculenta HOM05D004407 ORTHO05D005074 5.2e-12 75.1 84 46.4
Prupe.3G298500 Prunus persica HOM05D004407 ORTHO05D005074 5.2e-12 75.1 84 42.9
PGR083G0262 Punica granatum HOM05D004407 ORTHO05D005074 5.2e-12 75.1 84 46.4
BolC9t54931H Brassica oleracea HOM05D006758 ORTHO05D008326 6.8e-12 74.7 119 39.5
DCAR_015074 Daucus carota HOM05D004407 ORTHO05D005074 6.8e-12 74.7 84 45.2
MBI11_g29154_MAGBIO Magnolia biondii HOM05D004407 ORTHO05D005074 6.8e-12 74.7 84 46.4
Rhsim10G0012400 Rhododendron simsii HOM05D004407 ORTHO05D005074 6.8e-12 74.7 147 36.7
Aqoxy3G01382 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 8.9e-12 74.3 84 45.2
BcaC04g22350 Brassica carinata HOM05D004407 ORTHO05D005074 8.9e-12 74.3 119 39.5
C09p20260 Brassica napus HOM05D006758 ORTHO05D008326 8.9e-12 74.3 119 39.5
HanXRQChr09g0255761 Helianthus annuus HOM05D004407 ORTHO05D005074 8.9e-12 74.3 86 47.7
Sc03g0006940 Simmondsia chinensis HOM05D004407 ORTHO05D005074 8.9e-12 74.3 83 45.8
Sc03g0006970 Simmondsia chinensis HOM05D004407 ORTHO05D005074 8.9e-12 74.3 83 45.8
Aa31LG2G5400 Aethionema arabicum HOM05D004407 ORTHO05D005074 1.2e-11 73.9 100 42.0
A04p13730 Brassica napus HOM05D004407 ORTHO05D005074 1.2e-11 73.9 84 45.2
Hma1.2p1_0818F.1_g223510 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 1.2e-11 73.9 84 44.0
THA.LOC104825308 Tarenaya hassleriana HOM05D004407 ORTHO05D005074 1.2e-11 73.9 84 46.4
C04p47510 Brassica napus HOM05D004407 ORTHO05D005074 1.5e-11 73.6 84 45.2
BraA04t17032Z Brassica rapa HOM05D004407 ORTHO05D005074 1.5e-11 73.6 84 45.2
Hma1.2p1_0818F.1_g223550 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 1.5e-11 73.6 84 44.0
Sabra16G0217100 Salix brachista HOM05D004407 ORTHO05D005074 1.5e-11 73.6 85 44.7
TPR.G1219 Trifolium pratense HOM05D004407 ORTHO05D005074 2.0e-11 73.2 83 45.8
DCAR_015072 Daucus carota HOM05D004407 ORTHO05D005074 2.6e-11 72.8 84 45.2
Duzib264G0535 Durio zibethinus HOM05D004407 ORTHO05D005074 2.6e-11 72.8 84 46.4
Hma1.2p1_1484F.1_g286420 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 2.6e-11 72.8 84 44.0
EL10Ac4g07679 Beta vulgaris HOM05D004407 ORTHO05D005074 3.4e-11 72.4 84 44.0
BcaB07g31285 Brassica carinata HOM05D004407 ORTHO05D005074 3.4e-11 72.4 84 45.2
Hma1.2p1_0279F.1_g112130 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 3.4e-11 72.4 84 45.2
Psat0s1368g0080 Pisum sativum HOM05D004407 ORTHO05D005074 3.4e-11 72.4 83 42.2
Hma1.2p1_0818F.1_g223560 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 4.4e-11 72.0 84 44.0
A09p16650 Brassica napus HOM05D006758 ORTHO05D008326 5.8e-11 71.6 119 39.5
BraA09t37304Z Brassica rapa HOM05D006758 ORTHO05D008326 5.8e-11 71.6 119 39.5
CANSAT64G1834 Cannabis sativa HOM05D004407 ORTHO05D005074 5.8e-11 71.6 84 42.9
Hma1.2p1_0818F.1_g223530 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 5.8e-11 71.6 84 44.0
Hma1.2p1_1484F.1_g286386 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 5.8e-11 71.6 84 44.0
Hma1.2p1_1484F.1_g286410 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 5.8e-11 71.6 84 44.0
TPR.G1105 Trifolium pratense HOM05D004407 ORTHO05D005074 7.6e-11 71.2 83 43.4
Thecc.04G026400 Theobroma cacao HOM05D004407 ORTHO05D005074 9.9e-11 70.9 84 45.2
FAN14G0353 Fragaria x ananassa HOM05D004407 ORTHO05D005074 1.7e-10 70.1 84 38.1
Actinidia05950 Actinidia chinensis HOM05D004407 ORTHO05D005074 2.2e-10 69.7 84 44.0
Potri.001G336200 Populus trichocarpa HOM05D004407 ORTHO05D005074 2.9e-10 69.3 85 43.5
GSVIVG01003970001 Vitis vinifera HOM05D004407 ORTHO05D005074 2.9e-10 69.3 88 44.3
Hma1.2p1_1484F.1_g286390 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 4.9e-10 68.6 84 41.7
PSO832G4071 Papaver somniferum HOM05D004407 ORTHO05D005074 6.4e-10 68.2 84 45.2
Aqoxy4G01774 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 8.4e-10 67.8 82 43.9
Aqoxy5G03597 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 8.4e-10 67.8 82 43.9
BcaB02g07933 Brassica carinata HOM05D004407 ORTHO05D005074 1.1e-09 67.4 84 46.4
FAN05G1079 Fragaria x ananassa HOM05D004407 ORTHO05D005074 1.1e-09 67.4 100 36.0
PSO063G0264 Papaver somniferum HOM05D004407 ORTHO05D005074 2.4e-09 66.2 84 44.0
Rhsim10G0012300 Rhododendron simsii HOM05D004407 ORTHO05D005074 2.4e-09 66.2 67 47.8
Lsat_1_v5_gn_2_93521 Lactuca sativa HOM05D004407 ORTHO05D005074 3.2e-09 65.9 131 37.4
PSO017G7028 Papaver somniferum HOM05D004407 ORTHO05D005074 3.2e-09 65.9 84 44.0
Migut.H00046 Erythranthe guttata HOM05D004407 ORTHO05D005074 7.1e-09 64.7 82 46.3
CARHR025870 Cardamine hirsuta HOM05D004407 ORTHO05D005074 9.2e-09 64.3 84 42.9
Thhalv10028030m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 9.2e-09 64.3 86 45.3
FvH4_6g52330 Fragaria vesca HOM05D004407 ORTHO05D005074 9.2e-09 64.3 155 30.3
A05p02470 Brassica napus HOM05D004407 ORTHO05D005074 1.6e-08 63.5 84 44.0
ECA238G3732 Erigeron canadensis HOM05D004407 ORTHO05D005074 1.6e-08 63.5 102 38.2
SEGI_17639 Sequoiadendron giganteum HOM05D050174 ORTHO05D005074 1.6e-08 63.5 122 36.9
AT5G40690 Arabidopsis thaliana HOM05D004407 ORTHO05D005074 2.1e-08 63.2 84 42.9
BcaNung02832 Brassica carinata HOM05D004407 ORTHO05D005074 2.1e-08 63.2 84 42.9
AL7G49050 Arabidopsis lyrata HOM05D004407 ORTHO05D005074 2.7e-08 62.8 84 41.7
ECA238G3518 Erigeron canadensis HOM05D004407 ORTHO05D005074 2.7e-08 62.8 102 36.3
SGA_v2.0_scaffold154G37145 Striga asiatica HOM05D002760 ORTHO05D003169 2.7e-08 62.8 75 41.3
RcHm_v2.0_Chr2g0173921 Rosa chinensis HOM05D004407 ORTHO05D005074 3.5e-08 62.4 61 42.6
TAR625G1142 Trochodendron aralioides HOM05D004407 ORTHO05D005074 4.6e-08 62.0 84 41.7
PGSC0003DMG400006921 Solanum tuberosum HOM05D004407 ORTHO05D005074 6.0e-08 61.6 78 42.3
A05p02450 Brassica napus HOM05D004407 ORTHO05D005074 7.8e-08 61.2 84 42.9
BraA05t19239Z Brassica rapa HOM05D004407 ORTHO05D005074 7.8e-08 61.2 84 42.9
PSO407G0367 Papaver somniferum HOM05D004407 ORTHO05D005074 7.8e-08 61.2 84 41.7
unitig_747.g21864 Utricularia gibba HOM05D004407 ORTHO05D005074 7.8e-08 61.2 82 43.9
C04p02920 Brassica napus HOM05D004407 ORTHO05D005074 1.0e-07 60.8 84 42.9
BolC4t21933H Brassica oleracea HOM05D004407 ORTHO05D005074 1.0e-07 60.8 84 42.9
ECA232G1846 Erigeron canadensis HOM05D004407 ORTHO05D005074 1.3e-07 60.5 54 48.1
BraA05t19240Z Brassica rapa HOM05D004407 ORTHO05D005074 2.3e-07 59.7 84 42.9
HanXRQChr14g0451031 Helianthus annuus HOM05D004407 ORTHO05D005074 2.3e-07 59.7 82 45.1
Duzib187G1582 Durio zibethinus HOM05D004407 ORTHO05D005074 3.9e-07 58.9 89 37.1
C04p02940 Brassica napus HOM05D004407 ORTHO05D005074 5.1e-07 58.5 84 42.9
BolC4t21934H Brassica oleracea HOM05D004407 ORTHO05D005074 5.1e-07 58.5 84 42.9
Sopen02g017070 Solanum pennellii HOM05D000413 ORTHO05D005074 6.6e-07 58.2 78 39.7
BcaNung02830 Brassica carinata HOM05D004407 ORTHO05D005074 1.1e-06 57.4 84 41.7
TAR374G1728 Trochodendron aralioides HOM05D004407 ORTHO05D005074 1.1e-06 57.4 52 50.0
A05p02490 Brassica napus HOM05D004407 ORTHO05D005074 1.5e-06 57.0 81 40.7
BraA05t19242Z Brassica rapa HOM05D004407 ORTHO05D005074 1.5e-06 57.0 81 40.7
A05p02480 Brassica napus HOM05D004407 ORTHO05D005074 1.9e-06 56.6 84 39.3
BraA05t19241Z Brassica rapa HOM05D004407 ORTHO05D005074 1.9e-06 56.6 84 39.3
PGR083G1149 Punica granatum HOM05D004407 ORTHO05D005074 1.9e-06 56.6 84 36.9
C04p02950 Brassica napus HOM05D004407 ORTHO05D005074 2.5e-06 56.2 84 40.5
BolC4t21935H Brassica oleracea HOM05D004407 ORTHO05D005074 2.5e-06 56.2 84 40.5
Solyc02g067935.1 Solanum lycopersicum HOM05D004407 ORTHO05D005074 2.5e-06 56.2 76 39.5
Thhalv10019315m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 4.3e-06 55.5 84 38.1
AUR62020325 Chenopodium quinoa HOM05D004407 ORTHO05D005074 7.3e-06 54.7 84 39.3
Gohir.A11G065600 Gossypium hirsutum HOM05D004407 ORTHO05D005074 7.3e-06 54.7 84 35.7


User provided reference genes

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