Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_009830 Vanilla planifolia HOM05D006022 ORTHO05D007649 3.6e-73 278.1 136 100.0
Actinidia22171 Actinidia chinensis HOM05D006022 ORTHO05D007649 1.8e-16 89.7 104 44.2
CSS0021468 Camellia sinensis var. sinensis HOM05D006022 ORTHO05D007649 3.1e-16 89.0 109 45.0
Oeu009974.1 Olea europaea HOM05D006022 ORTHO05D007649 1.2e-15 87.0 103 45.6
Manes.01G050200 Manihot esculenta HOM05D006022 ORTHO05D007649 1.5e-15 86.7 107 41.1
Duzib084G0652 Durio zibethinus HOM05D006022 ORTHO05D007649 2.0e-15 86.3 83 48.2
Ciclev10018527m.g Citrus clementina HOM05D006022 ORTHO05D007649 2.6e-15 85.9 104 49.0
Cc08_g16230 Coffea canephora HOM05D006022 ORTHO05D007649 2.6e-15 85.9 87 46.0
Dinv38822 Davidia involucrata HOM05D006022 ORTHO05D007406 7.7e-15 84.3 81 51.9
Rhsim02G0245100 Rhododendron simsii HOM05D006022 ORTHO05D007649 7.7e-15 84.3 80 48.8
RhsimUnG0007600 Rhododendron simsii HOM05D006022 ORTHO05D007649 7.7e-15 84.3 80 48.8
Prupe.5G122300 Prunus persica HOM05D006022 ORTHO05D007649 1.3e-14 83.6 107 42.1
QL02p030100 Quercus lobata HOM05D006022 ORTHO05D007649 1.3e-14 83.6 81 53.1
Potri.001G089900 Populus trichocarpa HOM05D006022 ORTHO05D007649 1.7e-14 83.2 106 43.4
Atru.chr9.1963 Acer truncatum HOM05D006022 ORTHO05D007649 2.9e-14 82.4 106 45.3
AUR62019856 Chenopodium quinoa HOM05D006022 ORTHO05D007649 2.9e-14 82.4 87 51.7
VMungo0251G1998 Vigna mungo HOM05D006022 ORTHO05D007649 2.9e-14 82.4 95 47.4
MD14G1130300 Malus domestica HOM05D006022 ORTHO05D007649 3.8e-14 82.0 80 50.0
SGA_v2.0_scaffold111G31401 Striga asiatica HOM05D006022 ORTHO05D007649 3.8e-14 82.0 84 52.4
Thecc.03G300300 Theobroma cacao HOM05D006022 ORTHO05D007649 5.0e-14 81.6 107 42.1
TAR375G1078 Trochodendron aralioides HOM05D006022 ORTHO05D007649 5.0e-14 81.6 81 51.9
FAN04G2854 Fragaria x ananassa HOM05D006022 ORTHO05D007649 6.5e-14 81.3 97 45.4
SHI06972 Sapria himalayana HOM05D006022 ORTHO05D007649 6.5e-14 81.3 87 46.0
THA.LOC104807002 Tarenaya hassleriana HOM05D006022 ORTHO05D007649 6.5e-14 81.3 84 42.9
vmacro11345 Vaccinium macrocarpon HOM05D006022 ORTHO05D007649 8.5e-14 80.9 108 39.8
CANSAT21G0687 Cannabis sativa HOM05D006022 ORTHO05D007649 1.1e-13 80.5 103 45.6
AUR62010858 Chenopodium quinoa HOM05D006022 ORTHO05D007649 1.4e-13 80.1 87 51.7
Lsat_1_v5_gn_6_8380 Lactuca sativa HOM05D006022 ORTHO05D007649 1.4e-13 80.1 85 47.1
RcHm_v2.0_Chr7g0194241 Rosa chinensis HOM05D006022 ORTHO05D007649 1.4e-13 80.1 97 43.3
arahy.Tifrunner.gnm1.ann1.MN1JRI Arachis hypogaea HOM05D006022 ORTHO05D007649 2.5e-13 79.3 105 46.7
Lalb_Chr05g0224031 Lupinus albus HOM05D006022 ORTHO05D007649 2.5e-13 79.3 82 46.3
Ah.07g197550 Amaranthus hybridus HOM05D006022 ORTHO05D007649 4.2e-13 78.6 94 47.9
Glyma.08G023800 Glycine max HOM05D006022 ORTHO05D007649 4.2e-13 78.6 103 45.6
MD06G1109300 Malus domestica HOM05D006022 ORTHO05D007649 4.2e-13 78.6 79 51.9
arahy.Tifrunner.gnm1.ann1.DK6PZW Arachis hypogaea HOM05D006022 ORTHO05D007649 5.5e-13 78.2 92 47.8
Cfa011987 Carpinus fangiana HOM05D006022 ORTHO05D007649 5.5e-13 78.2 109 44.0
Haze_09085 Corylus avellana HOM05D006022 ORTHO05D007649 5.5e-13 78.2 109 44.0
Aqoxy5G04291 Aquilegia oxysepala HOM05D006022 ORTHO05D007649 7.2e-13 77.8 112 46.4
Gohir.A08G112400 Gossypium hirsutum HOM05D006022 ORTHO05D007649 9.4e-13 77.4 85 48.2
Gorai.004G132300 Gossypium raimondii HOM05D006022 ORTHO05D007649 9.4e-13 77.4 85 48.2
Nn1g00246 Nelumbo nucifera HOM05D006022 ORTHO05D007649 9.4e-13 77.4 94 48.9
Sabra01G0066300 Salix brachista HOM05D006022 ORTHO05D007649 9.4e-13 77.4 106 40.6
Solyc12g055910.3 Solanum lycopersicum HOM05D006022 ORTHO05D007649 9.4e-13 77.4 99 41.4
FAN18G3678 Fragaria x ananassa HOM05D006022 ORTHO05D007649 1.2e-12 77.0 93 45.2
MBI07_g39841_MAGBIO Magnolia biondii HOM05D006022 ORTHO05D007649 1.2e-12 77.0 84 46.4
Sopen12g024380 Solanum pennellii HOM05D006022 ORTHO05D007649 2.7e-12 75.9 99 40.4
Migut.E01259 Erythranthe guttata HOM05D006022 ORTHO05D007649 3.6e-12 75.5 97 43.3
Glyma.05G217800 Glycine max HOM05D006022 ORTHO05D007649 3.6e-12 75.5 89 46.1
Gohir.D08G125400 Gossypium hirsutum HOM05D006022 ORTHO05D007649 3.6e-12 75.5 82 46.3
PGR042G3794 Punica granatum HOM05D006022 ORTHO05D007649 6.1e-12 74.7 92 43.5
Zm00001eb209080 Zea mays HOM05D006022 ORTHO05D007649 7.9e-12 74.3 80 48.8
ATR0602G083 Amborella trichopoda HOM05D006022 ORTHO05D007649 1.0e-11 73.9 83 45.8
Sed0008879 Sechium edule HOM05D006022 ORTHO05D007649 1.0e-11 73.9 119 40.3
CiPaw.12G081600 Carya illinoinensis HOM05D006022 ORTHO05D007649 1.4e-11 73.6 108 37.0
Psat7g023280 Pisum sativum HOM05D006022 ORTHO05D007649 1.4e-11 73.6 81 46.9
Nitab4.5_0004010g0010 Nicotiana tabacum HOM05D006022 ORTHO05D007649 1.8e-11 73.2 83 47.0
Hund14211 Selenicereus undatus HOM05D006022 ORTHO05D007649 3.0e-11 72.4 95 42.1
GSVIVG01019556001 Vitis vinifera HOM05D006022 ORTHO05D007649 3.0e-11 72.4 98 40.8
CsaV3_5G001870 Cucumis sativus L. HOM05D006022 ORTHO05D007649 3.9e-11 72.0 106 43.4
FvH4_5g04850 Fragaria vesca HOM05D006022 ORTHO05D007649 3.9e-11 72.0 97 42.3
Nitab4.5_0004515g0030 Nicotiana tabacum HOM05D006022 ORTHO05D007649 3.9e-11 72.0 81 49.4
Phvul.002G299600 Phaseolus vulgaris HOM05D006022 ORTHO05D007649 3.9e-11 72.0 95 43.2
ECA233G0648 Erigeron canadensis HOM05D006022 ORTHO05D007649 5.1e-11 71.6 108 38.0
FAN18G0793 Fragaria x ananassa HOM05D006022 ORTHO05D007649 5.1e-11 71.6 97 42.3
Sc22g0004930 Simmondsia chinensis HOM05D006022 ORTHO05D007649 5.1e-11 71.6 82 48.8
ClCG01G001730 Citrullus lanatus HOM05D006022 ORTHO05D007649 6.7e-11 71.2 107 41.1
HanXRQChr10g0316931 Helianthus annuus HOM05D006022 ORTHO05D007649 8.8e-11 70.9 108 37.0
Lj4g0024036 Lotus japonicus HOM05D006022 ORTHO05D007649 8.8e-11 70.9 103 40.8
PSO170G1024 Papaver somniferum HOM05D006022 ORTHO05D007649 8.8e-11 70.9 83 45.8
EL10Ac5g12933 Beta vulgaris HOM05D006022 ORTHO05D007649 1.1e-10 70.5 109 44.0
MELO3C005765.2 Cucumis melo HOM05D006022 ORTHO05D007649 1.5e-10 70.1 107 43.0
C03p35290 Brassica napus HOM05D006022 ORTHO05D007649 2.0e-10 69.7 84 40.5
SEGI_16880 Sequoiadendron giganteum HOM05D006022 ORTHO05D007649 2.0e-10 69.7 84 45.2
Peaxi162Scf00117g00919 Petunia axillaris HOM05D006022 ORTHO05D007649 2.6e-10 69.3 81 46.9
CAN.G390.10 Capsicum annuum HOM05D006022 ORTHO05D007649 3.3e-10 68.9 81 45.7
MSTRG.1801 Avicennia marina HOM05D006022 ORTHO05D007649 4.4e-10 68.6 102 37.3
Ca_17472_v3 Cicer arietinum L. HOM05D006022 ORTHO05D007649 4.4e-10 68.6 81 45.7
TPR.G3389 Trifolium pratense HOM05D006022 ORTHO05D007649 4.4e-10 68.6 81 46.9
BcaC01g04650 Brassica carinata HOM05D006022 ORTHO05D007649 5.7e-10 68.2 84 39.3
BolC3t15840H Brassica oleracea HOM05D006022 ORTHO05D007649 5.7e-10 68.2 84 39.3
Medtr8g099585 Medicago truncatula HOM05D006022 ORTHO05D007649 5.7e-10 68.2 106 40.6
Sp6g06550 Schrenkiella parvula HOM05D006022 ORTHO05D007649 7.4e-10 67.8 82 40.2
A03p29210 Brassica napus HOM05D006022 ORTHO05D007649 1.3e-09 67.0 84 39.3
BraA03t12116Z Brassica rapa HOM05D006022 ORTHO05D007649 2.2e-09 66.2 84 39.3
Hund11381 Selenicereus undatus HOM05D006022 ORTHO05D007649 4.8e-09 65.1 82 45.1
BcaB01g02727 Brassica carinata HOM05D006022 ORTHO05D007649 8.2e-09 64.3 84 38.1
TWI81G0375 Tripterygium wilfordii HOM05D006022 ORTHO05D007649 1.1e-08 63.9 82 41.5
unitig_26.g9566 Utricularia gibba HOM05D006022 ORTHO05D007649 1.1e-08 63.9 93 36.6
AL6G45030 Arabidopsis lyrata HOM05D006022 ORTHO05D007649 2.4e-08 62.8 114 32.5
AT4G10930 Arabidopsis thaliana HOM05D006022 ORTHO05D007649 4.1e-08 62.0 93 35.5
Carub.0006s2968 Capsella rubella HOM05D006022 ORTHO05D007649 7.0e-08 61.2 93 35.5
Hma1.2p1_0359F.1_g135140 Hydrangea macrophylla HOM05D006022 ORTHO05D007649 2.0e-07 59.7 125 34.4


User provided reference genes

Program Settings