Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_009738 Vanilla planifolia HOM05D001551 ORTHO05D005859 6.0e-202 707.2 339 100.0
MD06G1129000 Malus domestica HOM05D001551 ORTHO05D005859 2.6e-64 250.0 241 55.6
PSO017G1738 Papaver somniferum HOM05D001551 ORTHO05D005859 5.0e-63 245.7 198 63.6
MD14G1145900 Malus domestica HOM05D001551 ORTHO05D005859 6.5e-63 245.4 241 54.8
Prupe.5G140300 Prunus persica HOM05D001551 ORTHO05D005859 6.5e-63 245.4 241 55.2
Aqoxy5G03068 Aquilegia oxysepala HOM05D001551 ORTHO05D005859 1.4e-62 244.2 219 58.9
Cpa.g.sc2215.3 Carica papaya HOM05D001551 ORTHO05D005859 1.4e-62 244.2 199 62.3
MELO3C002387.2 Cucumis melo HOM05D001551 ORTHO05D005859 1.4e-62 244.2 243 53.9
ClCG03G004050 Citrullus lanatus HOM05D001551 ORTHO05D005859 1.9e-62 243.8 202 59.9
CDE02G1325 Ceratophyllum demersum HOM05D001551 ORTHO05D005859 2.5e-62 243.4 199 61.8
PSO478G5149 Papaver somniferum HOM05D001551 ORTHO05D005859 2.5e-62 243.4 198 63.1
Manes.06G127400 Manihot esculenta HOM05D001551 ORTHO05D005859 3.2e-62 243.0 187 65.8
Sed0027340 Sechium edule HOM05D001551 ORTHO05D005859 3.2e-62 243.0 243 53.9
CsaV3_1G009930 Cucumis sativus L. HOM05D001551 ORTHO05D005859 5.5e-62 242.3 243 53.5
Solyc06g068760.3 Solanum lycopersicum HOM05D001551 ORTHO05D005859 5.5e-62 242.3 223 57.8
unitig_27.g25103 Utricularia gibba HOM05D001551 ORTHO05D005859 7.2e-62 241.9 277 50.2
Cc04_g05770 Coffea canephora HOM05D001551 ORTHO05D005859 1.6e-61 240.7 199 61.8
GSVIVG01008663001 Vitis vinifera HOM05D001551 ORTHO05D005859 2.1e-61 240.4 199 62.3
Thecc.03G141800 Theobroma cacao HOM05D001551 ORTHO05D005859 2.7e-61 240.0 199 61.3
TAR629G2635 Trochodendron aralioides HOM05D001551 ORTHO05D005859 2.7e-61 240.0 199 60.8
MSTRG.22814 Avicennia marina HOM05D001551 ORTHO05D005859 7.9e-61 238.4 199 60.8
FAN13G0525 Fragaria x ananassa HOM05D001551 ORTHO05D005859 7.9e-61 238.4 244 54.1
Zm00001eb170550 Zea mays HOM05D001551 ORTHO05D005859 7.9e-61 238.4 183 66.1
Hma1.2p1_0577F.1_g182180 Hydrangea macrophylla HOM05D001551 ORTHO05D005859 1.0e-60 238.0 199 60.8
Potri.012G109800 Populus trichocarpa HOM05D001551 ORTHO05D005859 1.0e-60 238.0 240 54.2
Sabra12G0080000 Salix brachista HOM05D001551 ORTHO05D005859 1.0e-60 238.0 240 54.6
FvH4_5g09710 Fragaria vesca HOM05D001551 ORTHO05D005859 1.4e-60 237.7 241 53.9
FAN04G0171 Fragaria x ananassa HOM05D001551 ORTHO05D005859 1.4e-60 237.7 241 53.9
FAN18G2118 Fragaria x ananassa HOM05D001551 ORTHO05D005859 1.4e-60 237.7 241 53.9
Rhsim12G0181300 Rhododendron simsii HOM05D001551 ORTHO05D005859 1.4e-60 237.7 199 60.3
Sopen06g026040 Solanum pennellii HOM05D001551 ORTHO05D005859 1.4e-60 237.7 224 57.6
Os11g0524300 Oryza sativa ssp. japonica HOM05D001551 ORTHO05D005859 1.8e-60 237.3 183 65.0
THA.LOC104811554 Tarenaya hassleriana HOM05D001551 ORTHO05D005859 1.8e-60 237.3 225 55.1
Migut.I00664 Erythranthe guttata HOM05D001551 ORTHO05D005859 2.3e-60 236.9 199 60.3
TAR371G0091 Trochodendron aralioides HOM05D001551 ORTHO05D005859 2.3e-60 236.9 196 61.2
RcHm_v2.0_Chr7g0188531 Rosa chinensis HOM05D001551 ORTHO05D005859 3.0e-60 236.5 241 53.5
SalBow7G1162 Salvia bowleyana HOM05D001551 ORTHO05D005859 3.0e-60 236.5 199 60.3
THA.LOC104808046 Tarenaya hassleriana HOM05D001551 ORTHO05D005859 3.0e-60 236.5 199 59.8
Ca_10874_v3 Cicer arietinum L. HOM05D001551 ORTHO05D005859 3.9e-60 236.1 206 58.7
HanXRQChr05g0155371 Helianthus annuus HOM05D001551 ORTHO05D005859 3.9e-60 236.1 199 61.3
TWI23G1313 Tripterygium wilfordii HOM05D001551 ORTHO05D005859 3.9e-60 236.1 241 54.4
QL10p000300 Quercus lobata HOM05D001551 ORTHO05D005859 5.1e-60 235.7 241 52.7
Haze_07303 Corylus avellana HOM05D006543 ORTHO05D008308 6.7e-60 235.3 199 58.8
Cfa018920 Carpinus fangiana HOM05D001551 ORTHO05D005859 8.8e-60 235.0 241 52.3
SGA_v2.0_scaffold5G02806 Striga asiatica HOM05D001551 ORTHO05D005859 8.8e-60 235.0 191 62.3
FAN08G3006 Fragaria x ananassa HOM05D001551 ORTHO05D005859 1.1e-59 234.6 241 53.5
Nitab4.5_0007345g0100 Nicotiana tabacum HOM05D001551 ORTHO05D005859 1.5e-59 234.2 200 62.0
Phvul.009G160500 Phaseolus vulgaris HOM05D001551 ORTHO05D005859 1.5e-59 234.2 194 59.3
PGR044G0460 Punica granatum HOM05D001551 ORTHO05D005859 1.5e-59 234.2 219 58.0
CSS0038575 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 2.0e-59 233.8 199 59.3
CiPaw.12G000400 Carya illinoinensis HOM05D001551 ORTHO05D005859 2.0e-59 233.8 241 51.5
Lj1g0018460 Lotus japonicus HOM05D001551 ORTHO05D005859 2.0e-59 233.8 230 54.8
SGA_v2.0_scaffold37G14673 Striga asiatica HOM05D001551 ORTHO05D005859 2.0e-59 233.8 199 60.3
vmacro16761 Vaccinium macrocarpon HOM05D001551 ORTHO05D005859 2.0e-59 233.8 199 61.8
CAN.G1089.16 Capsicum annuum HOM05D001551 ORTHO05D005859 2.5e-59 233.4 200 61.5
Duzib205G1491 Durio zibethinus HOM05D001551 ORTHO05D005859 2.5e-59 233.4 199 59.8
Gohir.A11G038800 Gossypium hirsutum HOM05D001551 ORTHO05D005859 2.5e-59 233.4 199 58.8
PGSC0003DMG400025575 Solanum tuberosum HOM05D001551 ORTHO05D005859 2.5e-59 233.4 200 61.5
Glyma.04G202400 Glycine max HOM05D001551 ORTHO05D005859 3.3e-59 233.0 206 57.3
Lsat_1_v5_gn_5_9381 Lactuca sativa HOM05D001551 ORTHO05D005859 3.3e-59 233.0 199 59.3
Manes.14G043800 Manihot esculenta HOM05D001551 ORTHO05D005859 3.3e-59 233.0 202 59.4
COL.COLO4_37269 Corchorus olitorius HOM05D001551 ORTHO05D005859 4.3e-59 232.6 207 57.5
Nitab4.5_0012775g0030 Nicotiana tabacum HOM05D001551 ORTHO05D005859 4.3e-59 232.6 200 61.5
Lj9C488G12 Lonicera japonica HOM05D001551 ORTHO05D005859 5.7e-59 232.3 199 58.8
Cfa018698 Carpinus fangiana HOM05D001551 ORTHO05D005859 7.4e-59 231.9 241 52.3
Sc04g0000180 Simmondsia chinensis HOM05D001551 ORTHO05D005859 7.4e-59 231.9 231 53.7
Atru.chr6.1937 Acer truncatum HOM05D001551 ORTHO05D005859 9.7e-59 231.5 199 58.8
arahy.Tifrunner.gnm1.ann1.D8JD58 Arachis hypogaea HOM05D001551 ORTHO05D005859 1.3e-58 231.1 186 60.8
arahy.Tifrunner.gnm1.ann1.Q2CTBB Arachis hypogaea HOM05D001551 ORTHO05D005859 1.3e-58 231.1 186 60.8
Lalb_Chr08g0237601 Lupinus albus HOM05D001551 ORTHO05D005859 1.3e-58 231.1 198 58.1
Medtr3g098510 Medicago truncatula HOM05D001551 ORTHO05D005859 1.3e-58 231.1 210 56.2
CSS0002484 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 2.2e-58 230.3 199 58.8
Gohir.D11G042000 Gossypium hirsutum HOM05D001551 ORTHO05D005859 2.2e-58 230.3 199 57.8
Gorai.007G045200 Gossypium raimondii HOM05D001551 ORTHO05D005859 2.2e-58 230.3 199 57.8
Glyma.06G163100 Glycine max HOM05D001551 ORTHO05D005859 2.8e-58 229.9 206 55.8
Psat5g055440 Pisum sativum HOM05D001551 ORTHO05D005859 6.3e-58 228.8 205 58.5
Actinidia08913 Actinidia chinensis HOM05D001551 ORTHO05D005859 1.1e-57 228.0 199 58.8
vmacro19115 Vaccinium macrocarpon HOM05D001551 ORTHO05D005859 1.1e-57 228.0 199 57.8
BcaC09g50811 Brassica carinata HOM05D001551 ORTHO05D005859 1.4e-57 227.6 199 57.8
A01p16340 Brassica napus HOM05D001551 ORTHO05D005859 1.4e-57 227.6 199 57.8
BraA01t01589Z Brassica rapa HOM05D001551 ORTHO05D005859 1.4e-57 227.6 199 57.8
Peaxi162Scf00207g00254 Petunia axillaris HOM05D001551 ORTHO05D005859 1.4e-57 227.6 186 61.8
AagrBONN_evm.TU.Sc2ySwM_368.1985 Anthoceros agrestis HOM05D001551 ORTHO05D005859 1.8e-57 227.3 199 55.8
CARHR257170 Cardamine hirsuta HOM05D001551 ORTHO05D005859 2.4e-57 226.9 247 52.6
AT5G51020 Arabidopsis thaliana HOM05D001551 ORTHO05D005859 3.1e-57 226.5 247 52.6
C01p20490 Brassica napus HOM05D001551 ORTHO05D005859 3.1e-57 226.5 199 57.3
Actinidia36846 Actinidia chinensis HOM05D001551 ORTHO05D005859 4.1e-57 226.1 199 58.8
EL10Ac5g11272 Beta vulgaris HOM05D001551 ORTHO05D005859 4.1e-57 226.1 241 51.0
Gohir.A03G055800 Gossypium hirsutum HOM05D001551 ORTHO05D005859 5.3e-57 225.7 199 58.3
Oeu051186.2 Olea europaea HOM05D001551 ORTHO05D005859 6.9e-57 225.3 236 52.5
Pp3c6_23000 Physcomitrium patens HOM05D001551 ORTHO05D005859 6.9e-57 225.3 199 56.8
AL8G25230 Arabidopsis lyrata HOM05D001551 ORTHO05D005859 9.1e-57 224.9 247 52.2
BcaNung03998 Brassica carinata HOM05D001551 ORTHO05D005859 9.1e-57 224.9 199 57.3
BolC1t01980H Brassica oleracea HOM05D001551 ORTHO05D005859 1.5e-56 224.2 199 56.8
Thhalv10014437m.g Eutrema salsugineum HOM05D001551 ORTHO05D005859 2.0e-56 223.8 183 63.4
Sed0019000 Sechium edule HOM05D001551 ORTHO05D005859 2.6e-56 223.4 199 56.8
Ciclev10032408m.g Citrus clementina HOM05D001551 ORTHO05D005859 3.4e-56 223.0 199 57.8
Rhsim08G0198700 Rhododendron simsii HOM05D001551 ORTHO05D005859 3.4e-56 223.0 199 56.3
Sp6g13170 Schrenkiella parvula HOM05D001551 ORTHO05D005859 4.5e-56 222.6 247 49.8
Gohir.D03G110700 Gossypium hirsutum HOM05D001551 ORTHO05D005859 5.9e-56 222.2 199 58.3
Hund10026 Selenicereus undatus HOM05D001551 ORTHO05D005859 5.9e-56 222.2 241 51.0
Carub.0008s1102 Capsella rubella HOM05D001551 ORTHO05D005859 1.0e-55 221.5 196 60.2
Aa31LG3G7480 Aethionema arabicum HOM05D001551 ORTHO05D005859 1.3e-55 221.1 198 57.1
Gorai.003G117100 Gossypium raimondii HOM05D001551 ORTHO05D005859 1.3e-55 221.1 199 57.3
MBI07_g13940_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 1.3e-55 221.1 225 54.7
BraA03t10931Z Brassica rapa HOM05D001551 ORTHO05D005859 1.7e-55 220.7 247 49.8
Eucgr.K02189 Eucalyptus grandis HOM05D001551 ORTHO05D005859 5.0e-55 219.2 199 55.3
Pp3c5_10130 Physcomitrium patens HOM05D001551 ORTHO05D005859 5.0e-55 219.2 186 57.5
AUR62011939 Chenopodium quinoa HOM05D001551 ORTHO05D005859 6.5e-55 218.8 258 48.4
Mapoly0002s0145 Marchantia polymorpha HOM05D001551 ORTHO05D005859 8.5e-55 218.4 199 55.8
AUR62032208 Chenopodium quinoa HOM05D001551 ORTHO05D005859 1.9e-54 217.2 259 47.5
AUR62043378 Chenopodium quinoa HOM05D001551 ORTHO05D005859 5.5e-54 215.7 261 47.5
SMO118G0459 Selaginella moellendorffii HOM05D001551 ORTHO05D005859 7.2e-54 215.3 232 50.4
A03p16410 Brassica napus HOM05D001551 ORTHO05D005859 2.7e-53 213.4 272 46.7
Sp7g23070 Schrenkiella parvula HOM05D001551 ORTHO05D005859 7.9e-53 211.8 243 48.6
BcaC01g06112 Brassica carinata HOM05D001551 ORTHO05D005859 5.1e-52 209.1 261 46.4
DCAR_025640 Daucus carota HOM05D001551 ORTHO05D005859 1.7e-50 204.1 186 57.5
Dinv13710 Davidia involucrata HOM05D001551 ORTHO05D005859 1.7e-50 204.1 156 62.8
Actinidia18288 Actinidia chinensis HOM05D001551 ORTHO05D005859 8.2e-50 201.8 190 55.3
Nn3g16260 Nelumbo nucifera HOM05D001551 ORTHO05D005859 4.1e-49 199.5 115 76.5
AUR62043863 Chenopodium quinoa HOM05D001551 ORTHO05D005859 9.1e-49 198.4 308 41.2
TWI39G0428 Tripterygium wilfordii HOM05D001551 ORTHO05D005859 3.5e-48 196.4 228 50.4
TPR.G16934 Trifolium pratense HOM05D001551 ORTHO05D005859 1.0e-47 194.9 123 70.7
Actinidia25511 Actinidia chinensis HOM05D001551 ORTHO05D005859 1.7e-47 194.1 198 53.5
MBI07_g48061_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 5.0e-47 192.6 109 79.8
Duzib084G0881 Durio zibethinus HOM05D001551 ORTHO05D005859 7.2e-46 188.7 112 75.0
SEGI_34423 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 2.3e-44 183.7 158 55.1
CBR_g30803 Chara braunii HOM05D001551 ORTHO05D005859 1.1e-43 181.4 199 46.2
MBI07_g35983_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 4.4e-43 179.5 110 77.3
Haze_07088 Corylus avellana HOM05D001551 ORTHO05D005859 7.4e-43 178.7 152 58.6
Dinv23235 Davidia involucrata HOM05D001551 ORTHO05D005859 9.1e-41 171.8 159 57.9
Hund02515 Selenicereus undatus HOM05D001551 ORTHO05D005859 1.2e-40 171.4 233 45.1
Nn4g22121 Nelumbo nucifera HOM05D001551 ORTHO05D005859 7.7e-32 142.1 214 41.6
Thhalv10025970m.g Eutrema salsugineum HOM05D001551 ORTHO05D005859 2.8e-26 123.6 135 51.1
CDE06G0746 Ceratophyllum demersum HOM05D001551 ORTHO05D005859 3.7e-26 123.2 196 41.3
Sc04g0000140 Simmondsia chinensis HOM05D001551 ORTHO05D005859 3.7e-26 123.2 72 73.6
FvH4_6g04500 Fragaria vesca HOM05D001551 ORTHO05D005859 1.3e-23 114.8 70 75.7
CSS0038626 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 1.9e-22 110.9 109 54.1
Pp3c16_270 Physcomitrium patens HOM05D001551 ORTHO05D005859 2.5e-14 84.0 50 72.0
CSS0016811 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 4.3e-14 83.2 54 75.9
Sc04g0000130 Simmondsia chinensis HOM05D001551 ORTHO05D005859 1.0e-12 78.6 124 40.3
SEGI_13041 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 2.6e-11 73.9 45 64.4
BcaC01g06064 Brassica carinata HOM05D001551 ORTHO05D005859 1.1e-09 68.6 66 51.5
C03p19300 Brassica napus HOM05D001551 ORTHO05D042173 3.2e-09 67.0 37 70.3
Psat5g306440 Pisum sativum HOM05D001551 ORTHO05D006558 3.2e-09 67.0 52 63.5


User provided reference genes

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