Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_009718 Vanilla planifolia HOM05D004062 ORTHO05D004417 1.5e-74 282.7 143 100.0
MBI16_g14297_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 1.6e-23 113.2 137 46.7
MBI16_g14298_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 8.0e-23 110.9 139 45.3
MBI18_g04358_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 2.9e-20 102.4 139 43.2
MBI16_g14296_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 3.7e-20 102.1 132 45.5
Os05g0576600 Oryza sativa ssp. japonica HOM05D025274 ORTHO05D026015 3.0e-17 92.4 151 43.0
TAR622G0216 Trochodendron aralioides HOM05D004062 ORTHO05D004417 6.6e-17 91.3 143 40.6
TAR622G1405 Trochodendron aralioides HOM05D004062 ORTHO05D004417 2.1e-15 86.3 141 40.4
Zm00001eb296670 Zea mays HOM05D025274 ORTHO05D026015 2.1e-15 86.3 141 41.1
Nn3g17968 Nelumbo nucifera HOM05D004062 ORTHO05D004417 8.1e-15 84.3 150 38.7
Aqoxy3G03996 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 1.1e-14 84.0 137 38.7
Nn4g23971 Nelumbo nucifera HOM05D004062 ORTHO05D004417 4.0e-14 82.0 145 36.6
Aqoxy3G03995 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 6.8e-14 81.3 145 38.6
MBI10_g08537_MAGBIO Magnolia biondii HOM05D004062 ORTHO05D004417 1.2e-13 80.5 141 35.5
Thecc.04G128000 Theobroma cacao HOM05D004062 ORTHO05D004417 1.2e-13 80.5 144 36.8
Eucgr.F02795 Eucalyptus grandis HOM05D004062 ORTHO05D004417 1.5e-13 80.1 144 39.6
FvH4_4g26630 Fragaria vesca HOM05D004062 ORTHO05D004417 5.8e-13 78.2 141 37.6
FAN12G0456 Fragaria x ananassa HOM05D004062 ORTHO05D004417 5.8e-13 78.2 141 37.6
FAN12G4350 Fragaria x ananassa HOM05D004062 ORTHO05D004417 5.8e-13 78.2 141 37.6
TAR629G2241 Trochodendron aralioides HOM05D004062 ORTHO05D004417 7.5e-13 77.8 129 41.1
Sabra17G0098800 Salix brachista HOM05D004062 ORTHO05D004417 9.9e-13 77.4 140 36.4
FvH4_4g26590 Fragaria vesca HOM05D004062 ORTHO05D004417 1.3e-12 77.0 146 37.7
FvH4_4g26620 Fragaria vesca HOM05D004062 ORTHO05D004417 1.3e-12 77.0 146 37.7
FAN12G1602 Fragaria x ananassa HOM05D004062 ORTHO05D004417 1.3e-12 77.0 146 37.7
FAN12G1821 Fragaria x ananassa HOM05D004062 ORTHO05D004417 1.3e-12 77.0 146 38.4
FAN07G0530 Fragaria x ananassa HOM05D004062 ORTHO05D004417 1.7e-12 76.6 146 37.7
FAN07G0543 Fragaria x ananassa HOM05D004062 ORTHO05D004417 2.9e-12 75.9 141 37.6
RcHm_v2.0_Chr4g0434241 Rosa chinensis HOM05D004062 ORTHO05D004417 2.9e-12 75.9 139 36.7
CDE10G0393 Ceratophyllum demersum HOM05D004062 ORTHO05D004417 3.7e-12 75.5 139 30.2
FAN17G2092 Fragaria x ananassa HOM05D004062 ORTHO05D004417 4.9e-12 75.1 141 37.6
Os01g0644900 Oryza sativa ssp. japonica HOM05D025274 ORTHO05D026015 6.4e-12 74.7 159 36.5
Aqoxy3G03994 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 8.3e-12 74.3 140 35.7
Haze_14190 Corylus avellana HOM05D004062 ORTHO05D004417 8.3e-12 74.3 138 35.5
FAN22G1760 Fragaria x ananassa HOM05D004062 ORTHO05D004417 8.3e-12 74.3 141 36.9
RcHm_v2.0_Chr4g0434311 Rosa chinensis HOM05D004062 ORTHO05D004417 8.3e-12 74.3 141 37.6
FAN22G1944 Fragaria x ananassa HOM05D004062 ORTHO05D004417 1.9e-11 73.2 140 35.0
Prupe.1G317700 Prunus persica HOM05D004062 ORTHO05D004417 1.9e-11 73.2 142 37.3
FvH4_4g26582 Fragaria vesca HOM05D004062 ORTHO05D004417 2.4e-11 72.8 140 35.0
Ciclev10017837m.g Citrus clementina HOM05D004062 ORTHO05D004417 3.2e-11 72.4 147 33.3
FAN17G2061 Fragaria x ananassa HOM05D004062 ORTHO05D004417 4.1e-11 72.0 132 40.9
FAN22G1832 Fragaria x ananassa HOM05D004062 ORTHO05D004417 4.1e-11 72.0 131 41.2
Manes.01G113100 Manihot esculenta HOM05D004062 ORTHO05D004417 4.1e-11 72.0 138 36.2
HPP92_021069 Vanilla planifolia HOM05D034985 ORTHO05D004417 4.1e-11 72.0 126 42.1
FAN12G3833 Fragaria x ananassa HOM05D004062 ORTHO05D004417 5.4e-11 71.6 140 37.9
Rhsim08G0083900 Rhododendron simsii HOM05D004062 ORTHO05D004417 7.1e-11 71.2 130 33.8
Ciclev10018020m.g Citrus clementina HOM05D004062 ORTHO05D004417 1.2e-10 70.5 144 36.1
CSS0019285 Camellia sinensis var. sinensis HOM05D004062 ORTHO05D004417 1.6e-10 70.1 142 33.8
CiPaw.05G243300 Carya illinoinensis HOM05D004062 ORTHO05D004417 1.6e-10 70.1 144 35.4
QL02p050215 Quercus lobata HOM05D004062 ORTHO05D004417 1.6e-10 70.1 143 33.6
Rhsim09G0103200 Rhododendron simsii HOM05D004062 ORTHO05D004417 1.6e-10 70.1 130 36.9
CSS0038275 Camellia sinensis var. sinensis HOM05D004062 ORTHO05D004417 2.1e-10 69.7 144 33.3
Sabra04G0064400 Salix brachista HOM05D004062 ORTHO05D004417 2.1e-10 69.7 141 36.2
Potri.017G119800 Populus trichocarpa HOM05D004062 ORTHO05D004417 2.7e-10 69.3 151 32.5
Prupe.1G317600 Prunus persica HOM05D004062 ORTHO05D004417 2.7e-10 69.3 142 35.9
Potri.004G095150 Populus trichocarpa HOM05D004062 ORTHO05D004417 3.5e-10 68.9 143 32.9
Potri.004G095200 Populus trichocarpa HOM05D004062 ORTHO05D004417 3.5e-10 68.9 143 32.9
Cpa.g.sc314.3 Carica papaya HOM05D004062 ORTHO05D004417 1.0e-09 67.4 131 37.4
COL.COLO4_09380 Corchorus olitorius HOM05D004062 ORTHO05D004417 1.0e-09 67.4 132 34.8
ATR0706G120 Amborella trichopoda HOM05D003529 ORTHO05D004106 1.3e-09 67.0 135 36.3
Dinv33967 Davidia involucrata HOM05D004062 ORTHO05D004417 1.7e-09 66.6 129 34.9
MBI16_g07254_MAGBIO Magnolia biondii HOM05D014442 ORTHO05D004417 1.7e-09 66.6 79 45.6
TWI31G0152 Tripterygium wilfordii HOM05D004062 ORTHO05D004417 1.7e-09 66.6 123 36.6
Dinv34790 Davidia involucrata HOM05D002710 ORTHO05D002905 2.3e-09 66.2 129 34.1
CiPaw.04G044300 Carya illinoinensis HOM05D004062 ORTHO05D004417 3.0e-09 65.9 143 34.3
Potri.010G119200 Populus trichocarpa HOM05D004062 ORTHO05D004417 3.0e-09 65.9 131 35.9
arahy.Tifrunner.gnm1.ann1.56V7KA Arachis hypogaea HOM05D004062 ORTHO05D004417 3.9e-09 65.5 137 35.8
arahy.Tifrunner.gnm1.ann1.RE711V Arachis hypogaea HOM05D004062 ORTHO05D004417 3.9e-09 65.5 137 35.8
CiPaw.03G065300 Carya illinoinensis HOM05D004062 ORTHO05D004417 3.9e-09 65.5 142 34.5
Dinv31584 Davidia involucrata HOM05D004062 ORTHO05D004417 3.9e-09 65.5 111 35.1
Glyma.18G293600 Glycine max HOM05D004062 ORTHO05D004417 3.9e-09 65.5 142 33.1
Lj1g0013725 Lotus japonicus HOM05D004062 ORTHO05D004417 3.9e-09 65.5 141 32.6
Zm00001eb158620 Zea mays HOM05D025274 ORTHO05D026015 5.1e-09 65.1 157 33.1
Aqoxy3G03997 Aquilegia oxysepala HOM05D004062 ORTHO05D004417 6.6e-09 64.7 144 31.9
Ciclev10018255m.g Citrus clementina HOM05D004062 ORTHO05D004417 1.1e-08 63.9 142 33.1
Dinv16146 Davidia involucrata HOM05D004062 ORTHO05D004417 1.1e-08 63.9 134 29.9
Cc11_g09580 Coffea canephora HOM05D004062 ORTHO05D004417 1.5e-08 63.5 90 38.9
Duzib138G0221 Durio zibethinus HOM05D004062 ORTHO05D004417 1.5e-08 63.5 138 33.3
Zm00001eb344410 Zea mays HOM05D025274 ORTHO05D026015 1.5e-08 63.5 142 40.1
Cc07_g08490 Coffea canephora HOM05D004062 ORTHO05D004417 1.9e-08 63.2 140 29.3
Glyma.02G089400 Glycine max HOM05D004062 ORTHO05D004417 1.9e-08 63.2 140 32.1
Zm00001eb285880 Zea mays HOM05D003529 ORTHO05D004106 2.5e-08 62.8 135 37.8
CANSAT78G1768 Cannabis sativa HOM05D004062 ORTHO05D004417 5.6e-08 61.6 143 36.4
Eucgr.B02857 Eucalyptus grandis HOM05D004062 ORTHO05D004417 5.6e-08 61.6 91 39.6
Gohir.A11G166400 Gossypium hirsutum HOM05D004062 ORTHO05D004417 5.6e-08 61.6 129 34.9
Manes.02G072000 Manihot esculenta HOM05D004062 ORTHO05D004417 9.5e-08 60.8 143 32.9
PGR004G1762 Punica granatum HOM05D004062 ORTHO05D004417 9.5e-08 60.8 135 33.3
PGR102G0077 Punica granatum HOM05D004062 ORTHO05D004417 9.5e-08 60.8 146 30.1
SGA_v2.0_scaffold202G41473 Striga asiatica HOM05D004062 ORTHO05D004417 9.5e-08 60.8 132 37.9
Haze_00662 Corylus avellana HOM05D004062 ORTHO05D004417 1.2e-07 60.5 90 35.6
Sabra10G0089600 Salix brachista HOM05D004062 ORTHO05D004417 1.2e-07 60.5 132 34.1
Gohir.D11G172800 Gossypium hirsutum HOM05D004062 ORTHO05D004417 1.6e-07 60.1 132 32.6
Os01g0308600 Oryza sativa ssp. japonica HOM05D003529 ORTHO05D004106 1.6e-07 60.1 141 36.2
Rhsim09G0103100 Rhododendron simsii HOM05D004062 ORTHO05D004417 1.6e-07 60.1 127 34.6
SGA_v2.0_scaffold334G49044 Striga asiatica HOM05D003529 ORTHO05D004106 1.6e-07 60.1 137 35.8
Gohir.D11G172400 Gossypium hirsutum HOM05D004062 ORTHO05D004417 2.1e-07 59.7 132 32.6
Gorai.007G185100 Gossypium raimondii HOM05D004062 ORTHO05D004417 2.1e-07 59.7 132 32.6
Atru.chr11.263 Acer truncatum HOM05D004062 ORTHO05D004417 3.6e-07 58.9 93 35.5
Atru.chr11.283 Acer truncatum HOM05D004062 ORTHO05D004417 3.6e-07 58.9 93 35.5
Cfa015828 Carpinus fangiana HOM05D004062 ORTHO05D004417 3.6e-07 58.9 92 38.0
Cfa015829 Carpinus fangiana HOM05D004062 ORTHO05D004417 3.6e-07 58.9 90 37.8
Lj1g0027246 Lotus japonicus HOM05D004062 ORTHO05D004417 4.7e-07 58.5 143 30.8
SalBow5G1592 Salvia bowleyana HOM05D004062 ORTHO05D004417 4.7e-07 58.5 132 34.8
Lsat_1_v5_gn_3_82781 Lactuca sativa HOM05D004062 ORTHO05D004417 6.2e-07 58.2 128 30.5
Zm00001eb130390 Zea mays HOM05D003529 ORTHO05D004106 6.2e-07 58.2 142 36.6
Actinidia14929 Actinidia chinensis HOM05D004062 ORTHO05D004417 8.1e-07 57.8 143 32.2
Ciclev10017934m.g Citrus clementina HOM05D004062 ORTHO05D004417 8.1e-07 57.8 149 30.9
Zm00001eb296630 Zea mays HOM05D034985 ORTHO05D004417 1.1e-06 57.4 158 34.8
Actinidia15903 Actinidia chinensis HOM05D002710 ORTHO05D002905 1.4e-06 57.0 145 31.7
CDE10G1145 Ceratophyllum demersum HOM05D000286 ORTHO05D002905 2.4e-06 56.2 122 28.7
SGA_v2.0_scaffold376G50256 Striga asiatica HOM05D003529 ORTHO05D004106 2.4e-06 56.2 139 32.4
Thecc.02G220400 Theobroma cacao HOM05D004062 ORTHO05D004417 2.4e-06 56.2 143 30.8
SEGI_14476 Sequoiadendron giganteum HOM05D003529 ORTHO05D004106 4.0e-06 55.5 136 33.1
Phvul.007G217000 Phaseolus vulgaris HOM05D003529 ORTHO05D004106 5.2e-06 55.1 134 34.3
unitig_578.g16622 Utricularia gibba HOM05D003529 ORTHO05D004106 6.8e-06 54.7 132 37.1
Nn3g21602 Nelumbo nucifera HOM05D003529 ORTHO05D004106 8.9e-06 54.3 138 31.9


User provided reference genes

Program Settings