Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_009654 Vanilla planifolia HOM05D004431 ORTHO05D005053 0.0e+00 1147.5 586 100.0
TAR383G0937 Trochodendron aralioides HOM05D004431 ORTHO05D005053 1.1e-49 202.2 656 30.2
TAR624G0141 Trochodendron aralioides HOM05D004431 ORTHO05D005053 1.2e-45 188.7 655 29.6
Dinv04026 Davidia involucrata HOM05D004431 ORTHO05D005053 4.7e-45 186.8 660 29.8
Nn8g38722 Nelumbo nucifera HOM05D004431 ORTHO05D005053 6.2e-45 186.4 653 30.3
Duzib235G1186 Durio zibethinus HOM05D004431 ORTHO05D005053 5.2e-44 183.3 614 30.0
TAR626G0841 Trochodendron aralioides HOM05D004431 ORTHO05D005053 1.5e-43 181.8 600 29.3
Cpa.g.sc25.101 Carica papaya HOM05D004431 ORTHO05D005053 5.8e-43 179.9 662 28.2
Actinidia39085 Actinidia chinensis HOM05D004431 ORTHO05D005053 7.5e-43 179.5 647 29.1
Actinidia26033 Actinidia chinensis HOM05D004431 ORTHO05D005053 3.5e-40 170.6 653 29.2
Potri.001G170700 Populus trichocarpa HOM05D004431 ORTHO05D005053 3.5e-40 170.6 612 30.6
CSS0015138 Camellia sinensis var. sinensis HOM05D004431 ORTHO05D005053 4.6e-40 170.2 653 27.9
Hma1.2p1_0496F.1_g166170 Hydrangea macrophylla HOM05D004431 ORTHO05D005053 4.6e-40 170.2 702 28.2
Thecc.06G118000 Theobroma cacao HOM05D004431 ORTHO05D005053 6.0e-40 169.9 539 29.7
COL.COLO4_30777 Corchorus olitorius HOM05D004431 ORTHO05D005053 7.8e-40 169.5 627 29.0
CANSAT56G1268 Cannabis sativa HOM05D004431 ORTHO05D005053 1.7e-39 168.3 629 28.8
Gorai.011G058000 Gossypium raimondii HOM05D004431 ORTHO05D005053 2.3e-39 167.9 622 29.1
Cfa003544 Carpinus fangiana HOM05D004431 ORTHO05D005053 3.0e-39 167.5 659 27.0
Gohir.D10G054600 Gossypium hirsutum HOM05D004431 ORTHO05D005053 3.0e-39 167.5 622 29.1
TWI31G0700 Tripterygium wilfordii HOM05D004431 ORTHO05D005053 8.6e-39 166.0 635 29.1
Duzib160G0723 Durio zibethinus HOM05D004431 ORTHO05D005053 3.3e-38 164.1 620 28.1
Gohir.A10G052800 Gossypium hirsutum HOM05D004431 ORTHO05D005053 3.3e-38 164.1 620 28.5
CiPaw.02G136800 Carya illinoinensis HOM05D004431 ORTHO05D005053 4.3e-38 163.7 618 27.8
QL05p008292 Quercus lobata HOM05D004431 ORTHO05D005053 9.5e-38 162.5 662 27.3
Manes.04G143100 Manihot esculenta HOM05D004431 ORTHO05D005053 1.6e-37 161.8 612 27.9
Actinidia32177 Actinidia chinensis HOM05D004431 ORTHO05D005053 3.6e-37 160.6 627 27.6
Atru.chr1.3908 Acer truncatum HOM05D004431 ORTHO05D005053 3.1e-36 157.5 620 29.0
Nitab4.5_0000189g0240 Nicotiana tabacum HOM05D004431 ORTHO05D005053 3.1e-36 157.5 610 29.8
Haze_16016 Corylus avellana HOM05D004431 ORTHO05D005053 1.5e-35 155.2 549 27.7
Prupe.3G043500 Prunus persica HOM05D004431 ORTHO05D005053 1.5e-35 155.2 660 28.9
Hma1.2p1_0291F.1_g115210 Hydrangea macrophylla HOM05D004431 ORTHO05D005053 2.0e-35 154.8 634 27.6
Nitab4.5_0003670g0020 Nicotiana tabacum HOM05D004431 ORTHO05D005053 2.0e-35 154.8 616 29.2
MELO3C025812.2 Cucumis melo HOM05D004431 ORTHO05D005053 3.4e-35 154.1 650 27.7
Glyma.16G006000 Glycine max HOM05D004431 ORTHO05D005053 2.9e-34 151.0 670 28.1
CiPaw.01G220700 Carya illinoinensis HOM05D004431 ORTHO05D005053 4.9e-34 150.2 639 27.2
GSVIVG01016781001 Vitis vinifera HOM05D004431 ORTHO05D005053 4.9e-34 150.2 622 26.8
Glyma.07G036600 Glycine max HOM05D004431 ORTHO05D005053 8.4e-34 149.4 671 26.7
Duzib192G0474 Durio zibethinus HOM05D004431 ORTHO05D005053 1.1e-33 149.1 397 32.7
CsaV3_3G043560 Cucumis sativus L. HOM05D004431 ORTHO05D005053 1.9e-33 148.3 652 26.2
Sopen12g023680 Solanum pennellii HOM05D004431 ORTHO05D005053 2.4e-33 147.9 613 28.4
arahy.Tifrunner.gnm1.ann1.R6GQUS Arachis hypogaea HOM05D004431 ORTHO05D005053 9.2e-33 146.0 634 26.7
TWI79G0584 Tripterygium wilfordii HOM05D004431 ORTHO05D005053 4.6e-32 143.7 630 28.1
Aqoxy7G04104 Aquilegia oxysepala HOM05D004431 ORTHO05D005053 6.0e-32 143.3 567 27.5
RcHm_v2.0_Chr2g0144801 Rosa chinensis HOM05D004431 ORTHO05D005053 6.0e-32 143.3 683 26.9
Solyc12g049230.2 Solanum lycopersicum HOM05D004431 ORTHO05D005053 1.0e-31 142.5 574 28.2
CAN.G1387.2 Capsicum annuum HOM05D004431 ORTHO05D005053 2.3e-31 141.4 612 27.5
Ciclev10024871m.g Citrus clementina HOM05D004431 ORTHO05D005053 3.0e-31 141.0 650 26.8
Phvul.010G132600 Phaseolus vulgaris HOM05D004431 ORTHO05D005053 5.1e-31 140.2 652 26.5
Potri.003G063300 Populus trichocarpa HOM05D004431 ORTHO05D005053 8.7e-31 139.4 622 28.3
Lalb_Chr04g0263361 Lupinus albus HOM05D004431 ORTHO05D005053 1.1e-30 139.0 615 25.7
PSO210G0025 Papaver somniferum HOM05D004431 ORTHO05D005053 1.9e-30 138.3 625 25.9
VMungo0331G0816 Vigna mungo HOM05D004431 ORTHO05D005053 5.6e-30 136.7 612 28.3
Lj3g0020734 Lotus japonicus HOM05D004431 ORTHO05D005053 7.3e-30 136.3 555 26.3
Oeu058720.1 Olea europaea HOM05D004431 ORTHO05D005053 9.6e-30 136.0 664 25.2
Peaxi162Scf00177g00416 Petunia axillaris HOM05D004431 ORTHO05D005053 8.1e-29 132.9 646 27.2
Sabra01G0140500 Salix brachista HOM05D004431 ORTHO05D005053 1.1e-28 132.5 619 27.6
PGR119G2563 Punica granatum HOM05D004431 ORTHO05D005053 5.2e-28 130.2 677 26.0
Oeu007568.1 Olea europaea HOM05D004431 ORTHO05D005053 9.0e-28 129.4 645 25.7
Sed0008578 Sechium edule HOM05D004431 ORTHO05D005053 2.0e-27 128.3 617 26.6
Sed0000839 Sechium edule HOM05D004431 ORTHO05D005053 3.4e-27 127.5 651 26.0
MD17G1170400 Malus domestica HOM05D004431 ORTHO05D005053 4.4e-27 127.1 687 26.5
ClCG07G013980 Citrullus lanatus HOM05D004431 ORTHO05D005053 5.8e-27 126.7 629 26.7
Lalb_Chr25g0281161 Lupinus albus HOM05D004431 ORTHO05D005053 1.3e-26 125.6 660 24.8
Eucgr.F03171 Eucalyptus grandis HOM05D004431 ORTHO05D005053 6.4e-26 123.2 665 25.3
Os06g0206100 Oryza sativa ssp. japonica HOM05D004431 ORTHO05D005053 6.4e-26 123.2 632 25.3
Sc12g0010510 Simmondsia chinensis HOM05D004431 ORTHO05D005053 6.4e-26 123.2 594 26.3
MD09G1185800 Malus domestica HOM05D004431 ORTHO05D005053 1.9e-25 121.7 535 27.9
FvH4_6g34480 Fragaria vesca HOM05D004431 ORTHO05D005053 4.2e-25 120.6 532 27.1
FAN14G5417 Fragaria x ananassa HOM05D004431 ORTHO05D005053 5.4e-25 120.2 532 27.1
PSO210G2002 Papaver somniferum HOM05D004431 ORTHO05D005053 7.1e-25 119.8 568 25.2
vmacro17052 Vaccinium macrocarpon HOM05D004431 ORTHO05D005053 7.1e-25 119.8 692 26.0
Cc04_g01450 Coffea canephora HOM05D004431 ORTHO05D005053 1.6e-24 118.6 619 26.5
FAN09G2590 Fragaria x ananassa HOM05D004431 ORTHO05D005053 1.6e-24 118.6 527 26.6
THA.LOC104815628 Tarenaya hassleriana HOM05D004431 ORTHO05D005053 2.7e-24 117.9 672 25.9
Lj9A522G68 Lonicera japonica HOM05D004431 ORTHO05D005053 4.6e-24 117.1 667 26.5
Manes.11G021900 Manihot esculenta HOM05D004431 ORTHO05D005053 3.0e-23 114.4 630 26.2
TAR371G0531 Trochodendron aralioides HOM05D004431 ORTHO05D005053 3.0e-23 114.4 478 27.8
Medtr8g019650 Medicago truncatula HOM05D004431 ORTHO05D005053 3.9e-23 114.0 583 25.6
THA.LOC104810364 Tarenaya hassleriana HOM05D004431 ORTHO05D005053 3.9e-23 114.0 654 25.8
FAN05G1075 Fragaria x ananassa HOM05D004431 ORTHO05D005053 6.6e-23 113.2 533 26.5
Ca_05011_v3 Cicer arietinum L. HOM05D004431 ORTHO05D005053 1.1e-22 112.5 547 24.3
EL10Ac7g16396 Beta vulgaris HOM05D004431 ORTHO05D005053 1.5e-22 112.1 605 25.6
arahy.Tifrunner.gnm1.ann1.BWR49H Arachis hypogaea HOM05D004431 ORTHO05D005053 1.9e-22 111.7 592 25.8
AT3G13990 Arabidopsis thaliana HOM05D004431 ORTHO05D005053 2.5e-22 111.3 666 24.9
FAN02G1223 Fragaria x ananassa HOM05D004431 ORTHO05D005053 2.1e-21 108.2 533 26.1
Lsat_1_v5_gn_4_93840 Lactuca sativa HOM05D004431 ORTHO05D005053 4.8e-21 107.1 653 26.2
CDE06G2581 Ceratophyllum demersum HOM05D004431 ORTHO05D005053 8.1e-21 106.3 458 29.0
MBI19_g19956_MAGBIO Magnolia biondii HOM05D004431 ORTHO05D005053 8.1e-21 106.3 606 26.1
Migut.I01062 Erythranthe guttata HOM05D004431 ORTHO05D005053 1.1e-20 105.9 651 24.6
Aa31LG8G1190 Aethionema arabicum HOM05D004431 ORTHO05D005053 5.3e-20 103.6 673 23.9
Carub.0003s1357 Capsella rubella HOM05D004431 ORTHO05D005053 9.0e-20 102.8 670 24.5
Psat4g183320 Pisum sativum HOM05D004431 ORTHO05D005053 1.2e-19 102.4 553 25.9
TPR.G16457 Trifolium pratense HOM05D004431 ORTHO05D005053 2.6e-19 101.3 406 26.6
Lj5A38T42 Lonicera japonica HOM05D004431 ORTHO05D005053 1.3e-18 99.0 324 30.6
Rhsim12G0209100 Rhododendron simsii HOM05D004431 ORTHO05D005053 1.3e-18 99.0 418 29.4
ATR0598G277 Amborella trichopoda HOM05D004431 ORTHO05D005053 1.7e-18 98.6 332 29.8
Lalb_Chr01g0013561 Lupinus albus HOM05D004431 ORTHO05D005053 1.7e-18 98.6 625 24.2
AUR62001498 Chenopodium quinoa HOM05D004431 ORTHO05D005053 2.9e-18 97.8 609 25.8
Zm00001eb373630 Zea mays HOM05D004431 ORTHO05D005053 6.4e-18 96.7 629 22.9
Thhalv10011240m.g Eutrema salsugineum HOM05D004431 ORTHO05D005053 8.4e-18 96.3 639 23.5
ECA232G4272 Erigeron canadensis HOM05D004431 ORTHO05D005053 1.9e-17 95.1 627 25.8
AUR62009872 Chenopodium quinoa HOM05D004431 ORTHO05D005053 5.4e-17 93.6 607 25.0
Sp3g12240 Schrenkiella parvula HOM05D004431 ORTHO05D005053 2.7e-16 91.3 681 23.6
Hund05746 Selenicereus undatus HOM05D004431 ORTHO05D005053 2.7e-16 91.3 603 23.9
BcaB06g25412 Brassica carinata HOM05D004431 ORTHO05D005053 3.5e-16 90.9 549 25.0
SalBow6G5309 Salvia bowleyana HOM05D004431 ORTHO05D005053 6.0e-16 90.1 400 26.8
AL3G26190 Arabidopsis lyrata HOM05D004431 ORTHO05D005053 1.3e-15 89.0 657 23.1
unitig_32.g11537 Utricularia gibba HOM05D004431 ORTHO05D005053 1.8e-15 88.6 573 24.6
Psat5g275800 Pisum sativum HOM05D004431 ORTHO05D005053 1.9e-14 85.1 433 24.2
Os03g0411000 Oryza sativa ssp. japonica HOM05D004431 ORTHO05D005053 3.3e-14 84.3 563 24.0
Ah.08g216670 Amaranthus hybridus HOM05D004431 ORTHO05D005053 7.4e-14 83.2 610 23.9
BolC1t05009H Brassica oleracea HOM05D004431 ORTHO05D005053 2.1e-13 81.6 538 24.2
SGA_v2.0_scaffold71G23865 Striga asiatica HOM05D004431 ORTHO05D005053 3.7e-13 80.9 403 27.3
BraA01t04004Z Brassica rapa HOM05D004431 ORTHO05D005053 4.8e-13 80.5 530 23.4
unitig_748.g7593 Utricularia gibba HOM05D004431 ORTHO05D005053 4.8e-13 80.5 646 25.2
Hund18691 Selenicereus undatus HOM05D004431 ORTHO05D005053 6.2e-13 80.1 577 23.9
A01p39630 Brassica napus HOM05D004431 ORTHO05D005053 2.4e-12 78.2 533 23.6
Lalb_Chr04g0261091 Lupinus albus HOM05D004431 ORTHO05D005053 2.4e-12 78.2 519 24.5
HanXRQChr09g0276761 Helianthus annuus HOM05D004431 ORTHO05D005053 4.0e-12 77.4 647 24.3
MSTRG.22553 Avicennia marina HOM05D004431 ORTHO05D005053 1.2e-11 75.9 396 25.3
Zm00001eb278740 Zea mays HOM05D004431 ORTHO05D005053 1.2e-11 75.9 624 22.9
C01p50590 Brassica napus HOM05D004431 ORTHO05D005053 7.6e-11 73.2 539 23.7
BcaB04g20964 Brassica carinata HOM05D004431 ORTHO05D005053 9.9e-11 72.8 539 23.9
Oeu007569.1 Olea europaea HOM05D004431 ORTHO05D005053 2.9e-10 71.2 247 26.7
Peaxi162Scf00038g01825 Petunia axillaris HOM05D004431 ORTHO05D005053 1.4e-09 68.9 399 26.1
CDE10G1051 Ceratophyllum demersum HOM05D002148 ORTHO05D002547 7.1e-09 66.6 205 32.2
Cc05_g02040 Coffea canephora HOM05D002148 ORTHO05D002547 1.8e-07 62.0 486 22.8
BraA05t22352Z Brassica rapa HOM05D004431 ORTHO05D005053 3.0e-07 61.2 340 24.7
CDE07G1783 Ceratophyllum demersum HOM05D004431 ORTHO05D002474 5.1e-07 60.5 393 26.2
Manes.12G063603 Manihot esculenta HOM05D002148 ORTHO05D002547 6.7e-07 60.1 500 23.2
Psat2g060320 Pisum sativum HOM05D002148 ORTHO05D002547 1.1e-06 59.3 275 30.2
ATR0751G250 Amborella trichopoda HOM05D002148 ORTHO05D002547 1.5e-06 58.9 292 28.1
Gohir.A07G087000 Gossypium hirsutum HOM05D002148 ORTHO05D002547 1.5e-06 58.9 264 24.2
A05p35420 Brassica napus HOM05D004431 ORTHO05D005053 1.9e-06 58.5 338 24.0
Zm00001eb019770 Zea mays HOM05D004431 ORTHO05D005053 1.9e-06 58.5 529 23.6
COL.COLO4_19648 Corchorus olitorius HOM05D002148 ORTHO05D002547 2.5e-06 58.2 277 27.1
Gohir.D07G091900 Gossypium hirsutum HOM05D002148 ORTHO05D002547 2.5e-06 58.2 240 24.6
TAR627G0712 Trochodendron aralioides HOM05D002148 ORTHO05D002547 2.5e-06 58.2 183 30.6
PSO210G7110 Papaver somniferum HOM05D002148 ORTHO05D002547 5.6e-06 57.0 470 22.6
Sc06g0009940 Simmondsia chinensis HOM05D002148 ORTHO05D002547 5.6e-06 57.0 158 32.9


User provided reference genes

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