Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_009641 Vanilla planifolia HOM05D004292 ORTHO05D005206 6.9e-139 497.3 247 100.0
ATR0564G234 Amborella trichopoda HOM05D004292 ORTHO05D005206 2.3e-94 349.4 246 69.1
THA.LOC104809176 Tarenaya hassleriana HOM05D004292 ORTHO05D005206 3.4e-93 345.5 245 67.8
Dinv07664 Davidia involucrata HOM05D004292 ORTHO05D005206 2.8e-92 342.4 242 69.8
Thhalv10019522m.g Eutrema salsugineum HOM05D004292 ORTHO05D005206 4.8e-92 341.7 241 69.3
Sp1g20550 Schrenkiella parvula HOM05D004292 ORTHO05D005206 4.8e-92 341.7 250 68.0
C06p45000 Brassica napus HOM05D004292 ORTHO05D005206 4.1e-91 338.6 241 67.2
BolC6t39558H Brassica oleracea HOM05D004292 ORTHO05D005206 4.1e-91 338.6 241 67.2
BcaC08g46539 Brassica carinata HOM05D004292 ORTHO05D005206 9.1e-91 337.4 241 66.8
A07p37330 Brassica napus HOM05D004292 ORTHO05D005206 9.1e-91 337.4 241 67.2
BraA07t31292Z Brassica rapa HOM05D004292 ORTHO05D005206 9.1e-91 337.4 241 67.2
TAR374G0923 Trochodendron aralioides HOM05D004292 ORTHO05D005206 9.1e-91 337.4 251 66.5
Sp5g26070 Schrenkiella parvula HOM05D004292 ORTHO05D005206 1.6e-90 336.7 241 67.6
CARHR064180 Cardamine hirsuta HOM05D004292 ORTHO05D005206 2.0e-90 336.3 241 67.6
MBI19_g22783_MAGBIO Magnolia biondii HOM05D004292 ORTHO05D005206 2.0e-90 336.3 290 59.3
Duzib251G0662 Durio zibethinus HOM05D004292 ORTHO05D005206 3.5e-90 335.5 252 67.9
Thhalv10008584m.g Eutrema salsugineum HOM05D004292 ORTHO05D005206 3.5e-90 335.5 251 65.7
Prupe.1G326900 Prunus persica HOM05D004292 ORTHO05D005206 3.5e-90 335.5 242 68.6
Atru.chr11.473 Acer truncatum HOM05D004292 ORTHO05D005206 7.7e-90 334.3 243 67.5
Lj3C871G6 Lonicera japonica HOM05D004292 ORTHO05D005206 7.7e-90 334.3 242 67.8
Thecc.02G283600 Theobroma cacao HOM05D004292 ORTHO05D005206 1.0e-89 334.0 244 68.9
SGA_v2.0_scaffold234G43615 Striga asiatica HOM05D004292 ORTHO05D005206 1.3e-89 333.6 249 65.9
Actinidia12367 Actinidia chinensis HOM05D004292 ORTHO05D005206 1.7e-89 333.2 242 67.4
Psat6g043600 Pisum sativum HOM05D004292 ORTHO05D005206 1.7e-89 333.2 253 64.8
TWI75G1503 Tripterygium wilfordii HOM05D004292 ORTHO05D005206 1.7e-89 333.2 241 68.5
Aqoxy3G00082 Aquilegia oxysepala HOM05D004292 ORTHO05D005206 2.2e-89 332.8 247 65.6
Gohir.D01G144600 Gossypium hirsutum HOM05D004292 ORTHO05D005206 2.2e-89 332.8 241 68.5
PGR119G0156 Punica granatum HOM05D004292 ORTHO05D005206 2.2e-89 332.8 243 67.5
BcaB03g14853 Brassica carinata HOM05D004292 ORTHO05D005206 2.9e-89 332.4 241 66.4
Gorai.002G178500 Gossypium raimondii HOM05D004292 ORTHO05D005206 2.9e-89 332.4 241 68.5
AT1G23110 Arabidopsis thaliana HOM05D004292 ORTHO05D005206 3.8e-89 332.0 251 66.1
Carub.0001s2263 Capsella rubella HOM05D004292 ORTHO05D005206 3.8e-89 332.0 251 66.1
Carub.0002s1769 Capsella rubella HOM05D004292 ORTHO05D005206 3.8e-89 332.0 241 67.2
AT1G70900 Arabidopsis thaliana HOM05D004292 ORTHO05D005206 5.0e-89 331.6 243 67.9
BcaB03g14168 Brassica carinata HOM05D004292 ORTHO05D005206 6.5e-89 331.3 248 65.7
CARHR023490 Cardamine hirsuta HOM05D004292 ORTHO05D005206 6.5e-89 331.3 250 65.2
AL2G30410 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 8.5e-89 330.9 241 67.6
Nn3g18267 Nelumbo nucifera HOM05D004292 ORTHO05D005206 8.5e-89 330.9 241 66.8
Hma1.2p1_0096F.1_g047700 Hydrangea macrophylla HOM05D004292 ORTHO05D005206 1.1e-88 330.5 242 67.4
AL1G36680 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 1.5e-88 330.1 242 66.5
Duzib248G1431 Durio zibethinus HOM05D004292 ORTHO05D005206 1.5e-88 330.1 241 67.2
GSVIVG01011737001 Vitis vinifera HOM05D004292 ORTHO05D005206 1.5e-88 330.1 245 66.5
CSS0026867 Camellia sinensis var. sinensis HOM05D004292 ORTHO05D005206 1.9e-88 329.7 240 67.5
Manes.15G129300 Manihot esculenta HOM05D004292 ORTHO05D005206 3.2e-88 328.9 245 67.3
PSO017G6162 Papaver somniferum HOM05D004292 ORTHO05D005206 3.2e-88 328.9 240 67.9
Potri.010G111300 Populus trichocarpa HOM05D004292 ORTHO05D005206 3.2e-88 328.9 242 66.5
Actinidia36661 Actinidia chinensis HOM05D004292 ORTHO05D005206 5.5e-88 328.2 242 67.4
MD13G1023800 Malus domestica HOM05D004292 ORTHO05D005206 7.2e-88 327.8 242 67.8
MSTRG.2160 Avicennia marina HOM05D004292 ORTHO05D005206 1.2e-87 327.0 244 64.8
Peaxi162Scf00253g01121 Petunia axillaris HOM05D004292 ORTHO05D005206 1.6e-87 326.6 245 66.1
PSO478G0265 Papaver somniferum HOM05D004292 ORTHO05D005206 2.7e-87 325.9 240 66.7
Sabra10G0081700 Salix brachista HOM05D004292 ORTHO05D005206 3.6e-87 325.5 241 65.1
TPR.G36967 Trifolium pratense HOM05D004292 ORTHO05D005206 3.6e-87 325.5 244 64.3
Manes.17G078500 Manihot esculenta HOM05D004292 ORTHO05D005206 8.0e-87 324.3 240 67.9
Lj2g0018897 Lotus japonicus HOM05D004292 ORTHO05D005206 1.0e-86 323.9 253 63.6
MD16G1026500 Malus domestica HOM05D004292 ORTHO05D005206 1.0e-86 323.9 243 66.7
Nitab4.5_0004230g0010 Nicotiana tabacum HOM05D004292 ORTHO05D005206 1.0e-86 323.9 251 65.7
PGSC0003DMG401005954 Solanum tuberosum HOM05D004292 ORTHO05D005206 1.0e-86 323.9 252 63.9
CANSAT64G1906 Cannabis sativa HOM05D004292 ORTHO05D005206 1.4e-86 323.6 242 66.5
Ciclev10016392m.g Citrus clementina HOM05D004292 ORTHO05D005206 1.4e-86 323.6 251 64.9
Medtr1g031620 Medicago truncatula HOM05D004292 ORTHO05D005206 1.4e-86 323.6 244 65.2
Eucgr.G02180 Eucalyptus grandis HOM05D004292 ORTHO05D005206 1.8e-86 323.2 247 64.0
Sopen04g002820 Solanum pennellii HOM05D004292 ORTHO05D005206 1.8e-86 323.2 245 64.9
Aa31LG7G7080 Aethionema arabicum HOM05D004292 ORTHO05D005206 2.3e-86 322.8 256 62.9
CAN.G150.4 Capsicum annuum HOM05D004292 ORTHO05D005206 2.3e-86 322.8 245 65.3
FAN07G2049 Fragaria x ananassa HOM05D004292 ORTHO05D005206 2.3e-86 322.8 242 65.7
Gohir.A05G309400 Gossypium hirsutum HOM05D004292 ORTHO05D005206 2.3e-86 322.8 243 64.6
Gohir.D05G310300 Gossypium hirsutum HOM05D004292 ORTHO05D005206 2.3e-86 322.8 243 64.6
arahy.Tifrunner.gnm1.ann1.EY5UDZ Arachis hypogaea HOM05D004292 ORTHO05D005206 3.0e-86 322.4 246 65.0
FAN17G0423 Fragaria x ananassa HOM05D004292 ORTHO05D005206 3.0e-86 322.4 242 66.1
FAN22G2140 Fragaria x ananassa HOM05D004292 ORTHO05D005206 3.0e-86 322.4 242 65.7
RcHm_v2.0_Chr4g0441581 Rosa chinensis HOM05D004292 ORTHO05D005206 3.0e-86 322.4 241 66.0
FvH4_4g32670 Fragaria vesca HOM05D004292 ORTHO05D005206 5.2e-86 321.6 242 65.7
FAN12G2104 Fragaria x ananassa HOM05D004292 ORTHO05D005206 5.2e-86 321.6 242 65.7
Solyc04g007730.3 Solanum lycopersicum HOM05D004292 ORTHO05D005206 5.2e-86 321.6 241 65.6
Glyma.19G064200 Glycine max HOM05D004292 ORTHO05D005206 6.8e-86 321.2 246 65.4
Rhsim09G0096100 Rhododendron simsii HOM05D004292 ORTHO05D005206 6.8e-86 321.2 244 66.0
A07p14020 Brassica napus HOM05D004292 ORTHO05D005206 1.2e-85 320.5 240 65.4
BraA07t29156Z Brassica rapa HOM05D004292 ORTHO05D005206 1.2e-85 320.5 240 65.4
COL.COLO4_13153 Corchorus olitorius HOM05D004292 ORTHO05D005206 1.2e-85 320.5 243 65.0
Gorai.009G330900 Gossypium raimondii HOM05D004292 ORTHO05D005206 1.2e-85 320.5 243 64.2
Nn4g24213 Nelumbo nucifera HOM05D004292 ORTHO05D005206 1.2e-85 320.5 243 64.6
BcaC06g35023 Brassica carinata HOM05D004292 ORTHO05D005206 1.5e-85 320.1 271 60.5
C07p20600 Brassica napus HOM05D004292 ORTHO05D005206 1.5e-85 320.1 271 60.5
BolC7t42590H Brassica oleracea HOM05D004292 ORTHO05D005206 2.0e-85 319.7 240 65.4
Phvul.003G031700 Phaseolus vulgaris HOM05D004292 ORTHO05D005206 2.6e-85 319.3 246 64.6
VMungo1215G3121 Vigna mungo HOM05D004292 ORTHO05D005206 2.6e-85 319.3 244 64.3
Peaxi162Scf00159g01025 Petunia axillaris HOM05D004292 ORTHO05D005206 9.8e-85 317.4 253 63.2
Migut.E00438 Erythranthe guttata HOM05D004292 ORTHO05D005206 1.7e-84 316.6 240 64.6
Lalb_Chr17g0338501 Lupinus albus HOM05D004292 ORTHO05D005206 2.2e-84 316.2 244 63.9
Os08g0433200 Oryza sativa ssp. japonica HOM05D004292 ORTHO05D005206 2.2e-84 316.2 248 63.7
SalBow8G2030 Salvia bowleyana HOM05D004292 ORTHO05D005206 2.2e-84 316.2 243 65.4
SalBow8G2865 Salvia bowleyana HOM05D004292 ORTHO05D005206 2.8e-84 315.8 243 65.4
Migut.L00354 Erythranthe guttata HOM05D004292 ORTHO05D005206 3.7e-84 315.5 245 64.5
Cfa008626 Carpinus fangiana HOM05D004292 ORTHO05D005206 4.9e-84 315.1 240 64.2
CDE05G3602 Ceratophyllum demersum HOM05D004292 ORTHO05D005206 1.1e-83 313.9 241 64.7
SalBow2G3034 Salvia bowleyana HOM05D004292 ORTHO05D005206 1.4e-83 313.5 246 62.2
Migut.L00977 Erythranthe guttata HOM05D004292 ORTHO05D005206 1.8e-83 313.2 245 64.5
Sc04g0005360 Simmondsia chinensis HOM05D004292 ORTHO05D005206 2.4e-83 312.8 245 64.5
Aa31LG4G10150 Aethionema arabicum HOM05D004292 ORTHO05D005206 3.1e-83 312.4 282 56.7
Zm00001eb041560 Zea mays HOM05D004292 ORTHO05D005206 3.1e-83 312.4 256 61.3
arahy.Tifrunner.gnm1.ann1.A6Q8V1 Arachis hypogaea HOM05D004292 ORTHO05D005206 9.1e-83 310.8 246 64.2
QL01p001285 Quercus lobata HOM05D004292 ORTHO05D005206 9.1e-83 310.8 243 64.2
HanXRQChr08g0212101 Helianthus annuus HOM05D004292 ORTHO05D005206 1.2e-82 310.5 243 63.8
CiPaw.06G047000 Carya illinoinensis HOM05D004292 ORTHO05D005206 2.7e-82 309.3 246 63.0
Potri.008G130700 Populus trichocarpa HOM05D004292 ORTHO05D005206 3.5e-82 308.9 241 64.3
Zm00001eb099420 Zea mays HOM05D004292 ORTHO05D005206 3.5e-82 308.9 251 61.8
MELO3C005303.2 Cucumis melo HOM05D004292 ORTHO05D005206 7.7e-82 307.8 251 61.0
CSS0022047 Camellia sinensis var. sinensis HOM05D004292 ORTHO05D005206 1.0e-81 307.4 243 61.3
CsaV3_5G028400 Cucumis sativus L. HOM05D004292 ORTHO05D005206 1.0e-81 307.4 251 61.4
Haze_10980 Corylus avellana HOM05D004292 ORTHO05D005206 1.3e-81 307.0 246 63.8
ClCG01G006270 Citrullus lanatus HOM05D004292 ORTHO05D005206 1.7e-81 306.6 251 60.6
AUR62014183 Chenopodium quinoa HOM05D004292 ORTHO05D005206 2.9e-81 305.8 250 62.0
HanXRQChr12g0364371 Helianthus annuus HOM05D004292 ORTHO05D005206 2.9e-81 305.8 242 62.8
ECA233G2687 Erigeron canadensis HOM05D004292 ORTHO05D005206 5.0e-81 305.1 246 61.4
Dinv14417 Davidia involucrata HOM05D004292 ORTHO05D005206 1.5e-80 303.5 184 78.3
Hund10268 Selenicereus undatus HOM05D004292 ORTHO05D005206 2.5e-80 302.8 244 62.3
Rhsim09G0095100 Rhododendron simsii HOM05D004292 ORTHO05D005206 4.2e-80 302.0 240 63.3
Sed0011413 Sechium edule HOM05D004292 ORTHO05D005206 4.2e-80 302.0 241 62.2
Cpa.g.c36802 Carica papaya HOM05D004292 ORTHO05D005206 5.5e-80 301.6 201 73.1
Ca_12594_v3 Cicer arietinum L. HOM05D004292 ORTHO05D005206 4.0e-78 295.4 238 62.2
Lsat_1_v5_gn_8_44580 Lactuca sativa HOM05D004292 ORTHO05D005206 2.9e-76 289.3 253 60.1
TAR622G0066 Trochodendron aralioides HOM05D004292 ORTHO05D005206 1.4e-75 287.0 226 62.4
Oeu018604.1 Olea europaea HOM05D004292 ORTHO05D005206 5.9e-74 281.6 174 78.2
Ah.03g137320 Amaranthus hybridus HOM05D004292 ORTHO05D001279 2.9e-73 279.3 175 76.0
Nitab4.5_0000426g0230 Nicotiana tabacum HOM05D004292 ORTHO05D005206 4.3e-72 275.4 252 59.1
MBI12_g36036_MAGBIO Magnolia biondii HOM05D004292 ORTHO05D005206 1.7e-68 263.5 245 58.0
DCAR_023592 Daucus carota HOM05D004292 ORTHO05D005206 4.9e-68 261.9 241 58.9
Ca_12581_v3 Cicer arietinum L. HOM05D004292 ORTHO05D005206 2.3e-65 253.1 153 77.1
vmacro10650 Vaccinium macrocarpon HOM05D004292 ORTHO05D005206 4.7e-63 245.4 147 82.3
vmacro10653 Vaccinium macrocarpon HOM05D004292 ORTHO05D005206 4.7e-63 245.4 147 82.3
Mapoly0185s0002 Marchantia polymorpha HOM05D004292 ORTHO05D005206 6.8e-62 241.5 192 56.8
Lj6C744T5 Lonicera japonica HOM05D004292 ORTHO05D005206 1.2e-61 240.7 149 77.9
DCAR_030229 Daucus carota HOM05D004292 ORTHO05D005206 1.7e-60 236.9 245 53.5
Cc11_g08440 Coffea canephora HOM05D004292 ORTHO05D005206 1.4e-59 233.8 176 69.3
Gohir.A01G151400 Gossypium hirsutum HOM05D004292 ORTHO05D005206 1.1e-56 224.2 177 63.8
Pp3c24_11420 Physcomitrium patens HOM05D004292 ORTHO05D005206 3.1e-54 216.1 180 57.2
SMO111G0032 Selaginella moellendorffii HOM05D004292 ORTHO05D005206 2.9e-52 209.5 175 61.1
C06p45020 Brassica napus HOM05D004292 ORTHO05D005206 1.5e-45 187.2 190 53.2
BolC6t39560H Brassica oleracea HOM05D004292 ORTHO05D005206 1.5e-45 187.2 190 53.2
Pp3c7_7180 Physcomitrium patens HOM05D004292 ORTHO05D005206 2.9e-44 183.0 217 41.0
CDE05G3401 Ceratophyllum demersum HOM05D001044 ORTHO05D004551 6.4e-44 181.8 110 79.1
unitig_699.g19535 Utricularia gibba HOM05D004292 ORTHO05D005206 1.1e-40 171.0 183 50.8
AagrBONN_evm.TU.Sc2ySwM_368.1350 Anthoceros agrestis HOM05D004292 ORTHO05D005206 2.1e-39 166.8 132 59.1
AL337U10010 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 8.7e-33 144.8 88 76.1
GSVIVG01038114001 Vitis vinifera HOM05D000242 ORTHO05D000631 5.1e-25 119.0 73 76.7
Cre03.g173550 Chlamydomonas reinhardtii HOM05D004292 ORTHO05D005206 4.8e-23 112.5 174 36.8
MD06G1224600 Malus domestica HOM05D004292 ORTHO05D005206 6.2e-23 112.1 73 69.9
Cc11_g08450 Coffea canephora HOM05D004292 ORTHO05D005206 1.8e-22 110.5 63 79.4
Cc07_g18460 Coffea canephora HOM05D004292 ORTHO05D005206 9.0e-22 108.2 75 73.3
C02p28370 Brassica napus HOM05D004292 ORTHO05D005206 4.9e-20 102.4 99 52.5
BolC2t08881H Brassica oleracea HOM05D004292 ORTHO05D005206 4.9e-20 102.4 99 52.5
DCAR_000574 Daucus carota HOM05D004292 ORTHO05D005206 2.1e-18 97.1 108 53.7
PRCOL_00000603 Prasinoderma coloniale HOM05D004292 ORTHO05D005206 7.9e-18 95.1 168 35.1
DCAR_009878 Daucus carota HOM05D004292 ORTHO05D005206 7.6e-13 78.6 83 54.2
DCAR_009985 Daucus carota HOM05D004292 ORTHO05D005206 1.9e-11 73.9 94 48.9
MCO07G095 Micromonas commoda HOM05D004292 ORTHO05D005206 1.8e-09 67.4 236 28.0
Os09g0411500 Oryza sativa ssp. japonica HOM05D004292 ORTHO05D005206 5.1e-09 65.9 45 60.0
arahy.Tifrunner.gnm1.ann1.B49LBP Arachis hypogaea HOM05D004292 ORTHO05D005206 4.3e-08 62.8 52 55.8
Cre03.g160850 Chlamydomonas reinhardtii HOM05D004292 ORTHO05D005206 5.7e-08 62.4 184 28.3
Lj4g0003601 Lotus japonicus HOM05D000353 ORTHO05D000174 6.3e-07 58.9 38 73.7
arahy.Tifrunner.gnm1.ann1.06RDDY Arachis hypogaea HOM05D004292 ORTHO05D005206 1.8e-06 57.4 54 55.6


User provided reference genes

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