Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_009588 Vanilla planifolia HOM05D006852 ORTHO05D008585 4.8e-121 438.0 241 100.0
Zm00001eb115340 Zea mays HOM05D006852 ORTHO05D008585 1.8e-83 313.2 266 61.3
CAN.G857.11 Capsicum annuum HOM05D006852 ORTHO05D008585 3.4e-82 308.9 244 62.7
Hma1.2p1_0293F.1_g116040 Hydrangea macrophylla HOM05D006852 ORTHO05D008585 1.3e-81 307.0 247 70.4
Potri.001G266200 Populus trichocarpa HOM05D006852 ORTHO05D008585 4.9e-81 305.1 244 67.6
arahy.Tifrunner.gnm1.ann1.5TR8MX Arachis hypogaea HOM05D006852 ORTHO05D008585 1.1e-80 303.9 196 75.5
PSO384G4724 Papaver somniferum HOM05D006852 ORTHO05D008585 5.4e-80 301.6 197 75.1
PSO339G6046 Papaver somniferum HOM05D006852 ORTHO05D008585 1.2e-79 300.4 197 74.6
Gohir.A08G144200 Gossypium hirsutum HOM05D006852 ORTHO05D008585 1.6e-79 300.1 181 78.5
COL.COLO4_31169 Corchorus olitorius HOM05D006852 ORTHO05D008585 2.1e-79 299.7 184 76.6
Dinv09352 Davidia involucrata HOM05D006852 ORTHO05D008585 1.0e-78 297.4 246 61.8
Glyma.13G202400 Glycine max HOM05D006852 ORTHO05D008585 1.0e-78 297.4 247 63.2
Lj3g0018236 Lotus japonicus HOM05D006852 ORTHO05D008585 1.3e-78 297.0 246 61.4
Nn7g36210 Nelumbo nucifera HOM05D006852 ORTHO05D008585 1.3e-78 297.0 244 66.8
Solyc04g074660.3 Solanum lycopersicum HOM05D006852 ORTHO05D008585 1.3e-78 297.0 202 69.3
Sopen04g029630 Solanum pennellii HOM05D006852 ORTHO05D008585 1.7e-78 296.6 202 69.3
EL10Ac2g04333 Beta vulgaris HOM05D006852 ORTHO05D008585 3.0e-78 295.8 202 69.3
Glyma.12G236900 Glycine max HOM05D006852 ORTHO05D008585 3.0e-78 295.8 186 76.9
PGSC0003DMG400030817 Solanum tuberosum HOM05D006852 ORTHO05D008585 8.6e-78 294.3 196 69.9
Thecc.01G410400 Theobroma cacao HOM05D006852 ORTHO05D008585 8.6e-78 294.3 180 77.2
Ciclev10032186m.g Citrus clementina HOM05D006852 ORTHO05D008585 1.5e-77 293.5 184 76.1
Gorai.004G172200 Gossypium raimondii HOM05D006852 ORTHO05D008585 1.5e-77 293.5 177 78.5
Peaxi162Scf00339g00115 Petunia axillaris HOM05D006852 ORTHO05D008585 1.5e-77 293.5 202 68.8
ATR0332G098 Amborella trichopoda HOM05D006852 ORTHO05D008585 2.5e-77 292.7 183 74.3
Manes.07G006500 Manihot esculenta HOM05D006852 ORTHO05D008585 2.5e-77 292.7 246 64.6
Actinidia31067 Actinidia chinensis HOM05D006852 ORTHO05D008585 3.3e-77 292.4 179 77.7
Duzib138G0005 Durio zibethinus HOM05D006852 ORTHO05D008585 4.3e-77 292.0 181 76.2
Atru.chr11.2623 Acer truncatum HOM05D006852 ORTHO05D008585 7.3e-77 291.2 198 71.2
Gohir.D08G165200 Gossypium hirsutum HOM05D006852 ORTHO05D008585 9.6e-77 290.8 177 78.0
ECA248G0614 Erigeron canadensis HOM05D006852 ORTHO05D008585 1.2e-76 290.4 239 58.6
Eucgr.G03378 Eucalyptus grandis HOM05D006852 ORTHO05D008585 1.6e-76 290.0 190 72.6
Lalb_Chr03g0034091 Lupinus albus HOM05D006852 ORTHO05D008585 1.6e-76 290.0 180 76.7
FvH4_7g01110 Fragaria vesca HOM05D006852 ORTHO05D008585 3.6e-76 288.9 246 65.0
HanXRQChr01g0015721 Helianthus annuus HOM05D006852 ORTHO05D008585 3.6e-76 288.9 189 71.4
Cfa010769 Carpinus fangiana HOM05D006852 ORTHO05D008585 4.7e-76 288.5 245 60.4
Sed0010309 Sechium edule HOM05D006852 ORTHO05D008585 4.7e-76 288.5 182 73.6
CiPaw.14G000200 Carya illinoinensis HOM05D006852 ORTHO05D008585 6.2e-76 288.1 246 60.6
MELO3C023552.2 Cucumis melo HOM05D006852 ORTHO05D008585 1.1e-75 287.3 179 75.4
Aqoxy1G00289 Aquilegia oxysepala HOM05D006852 ORTHO05D008585 1.4e-75 287.0 183 73.2
Phvul.011G211400 Phaseolus vulgaris HOM05D006852 ORTHO05D008585 1.8e-75 286.6 180 75.6
MD07G1011200 Malus domestica HOM05D006852 ORTHO05D008585 2.4e-75 286.2 181 75.7
Os11g0639000 Oryza sativa ssp. japonica HOM05D006852 ORTHO05D008585 2.4e-75 286.2 169 79.3
Psat4g148920 Pisum sativum HOM05D006852 ORTHO05D008585 5.2e-75 285.0 181 75.1
Medtr8g037265 Medicago truncatula HOM05D006852 ORTHO05D008585 6.8e-75 284.6 249 65.1
FAN06G4754 Fragaria x ananassa HOM05D006852 ORTHO05D008585 1.2e-74 283.9 248 64.5
Prupe.2G014400 Prunus persica HOM05D006852 ORTHO05D008585 1.2e-74 283.9 180 74.4
RcHm_v2.0_Chr1g0316111 Rosa chinensis HOM05D006852 ORTHO05D008585 1.2e-74 283.9 180 74.4
CARHR221730 Cardamine hirsuta HOM05D006852 ORTHO05D008585 1.5e-74 283.5 180 72.8
TWI79G0862 Tripterygium wilfordii HOM05D006852 ORTHO05D008585 2.0e-74 283.1 249 65.1
CsaV3_7G031040 Cucumis sativus L. HOM05D006852 ORTHO05D008585 5.8e-74 281.6 190 71.1
Lsat_1_v5_gn_1_106940 Lactuca sativa HOM05D006852 ORTHO05D008585 7.6e-74 281.2 255 56.1
THA.LOC104801980 Tarenaya hassleriana HOM05D006852 ORTHO05D008585 9.9e-74 280.8 246 58.9
AL7G40800 Arabidopsis lyrata HOM05D006852 ORTHO05D008585 1.7e-73 280.0 183 72.1
Carub.0007s2707 Capsella rubella HOM05D006852 ORTHO05D008585 1.7e-73 280.0 183 72.7
AT4G15030 Arabidopsis thaliana HOM05D006852 ORTHO05D008585 2.2e-73 279.6 183 71.6
Nitab4.5_0000125g0260 Nicotiana tabacum HOM05D006852 ORTHO05D008585 4.9e-73 278.5 179 72.1
CANSAT80G1911 Cannabis sativa HOM05D006852 ORTHO05D008585 6.4e-73 278.1 177 73.4
Nitab4.5_0006579g0050 Nicotiana tabacum HOM05D006852 ORTHO05D008585 8.4e-73 277.7 179 71.5
Thhalv10026084m.g Eutrema salsugineum HOM05D006852 ORTHO05D008585 1.1e-72 277.3 183 71.6
PGR031G2977 Punica granatum HOM05D006852 ORTHO05D008585 1.1e-72 277.3 177 74.0
ClCG09G004140 Citrullus lanatus HOM05D006852 ORTHO05D008585 7.1e-72 274.6 168 76.2
Oeu010800.1 Olea europaea HOM05D006852 ORTHO05D008585 9.3e-72 274.2 168 76.2
SEGI_37436 Sequoiadendron giganteum HOM05D006852 ORTHO05D008585 9.3e-72 274.2 197 68.0
AUR62023069 Chenopodium quinoa HOM05D006852 ORTHO05D008585 1.2e-71 273.9 233 57.9
Rhsim07G0056000 Rhododendron simsii HOM05D006852 ORTHO05D008585 6.0e-71 271.6 179 72.1
Sp7g13213 Schrenkiella parvula HOM05D006852 ORTHO05D008585 6.0e-71 271.6 183 69.9
BcaC09g50182 Brassica carinata HOM05D006852 ORTHO05D008585 7.8e-71 271.2 183 70.5
BcaNung00310 Brassica carinata HOM05D006852 ORTHO05D008585 1.3e-70 270.4 183 69.9
Sc10g0000090 Simmondsia chinensis HOM05D006852 ORTHO05D008585 1.7e-70 270.0 177 72.9
Aa31LG9G2320 Aethionema arabicum HOM05D006852 ORTHO05D008585 3.0e-70 269.2 272 55.5
vmacro13669 Vaccinium macrocarpon HOM05D006852 ORTHO05D008585 5.1e-70 268.5 300 50.7
A01p22510 Brassica napus HOM05D006852 ORTHO05D008585 1.9e-69 266.5 183 69.4
C01p28040 Brassica napus HOM05D006852 ORTHO05D008585 1.9e-69 266.5 242 59.1
QL04p006320 Quercus lobata HOM05D006852 ORTHO05D008585 1.9e-69 266.5 277 52.0
BolC1t02738H Brassica oleracea HOM05D006852 ORTHO05D008585 2.8e-68 262.7 255 53.3
FAN10G4066 Fragaria x ananassa HOM05D006852 ORTHO05D008585 2.8e-68 262.7 170 73.5
FAN01G0182 Fragaria x ananassa HOM05D006852 ORTHO05D008585 6.2e-68 261.5 169 73.4
unitig_747.g22049 Utricularia gibba HOM05D006852 ORTHO05D008585 1.1e-67 260.8 180 68.9
Sabra16G0163300 Salix brachista HOM05D006852 ORTHO05D008585 1.4e-67 260.4 271 59.4
FAN03G0769 Fragaria x ananassa HOM05D006852 ORTHO05D008585 6.9e-67 258.1 218 60.6
Ah.10g038820 Amaranthus hybridus HOM05D006852 ORTHO05D008585 2.7e-63 246.1 212 58.0
Mapoly0009s0102 Marchantia polymorpha HOM05D006852 ORTHO05D008585 7.9e-63 244.6 180 65.0
BraA01t02166Z Brassica rapa HOM05D006852 ORTHO05D008585 1.3e-62 243.8 231 55.0
SHI04066 Sapria himalayana HOM05D006852 ORTHO05D008585 1.3e-62 243.8 163 73.0
Pp3c2_10540 Physcomitrium patens HOM05D006852 ORTHO05D008585 8.7e-62 241.1 193 60.1
VMungo1127G1814 Vigna mungo HOM05D006852 ORTHO05D008585 1.1e-61 240.7 145 76.6
TPR.G1866 Trifolium pratense HOM05D006852 ORTHO05D008585 5.6e-61 238.4 150 73.3
AUR62009387 Chenopodium quinoa HOM05D006852 ORTHO05D008585 1.3e-60 237.3 216 56.9
AagrBONN_evm.TU.Sc2ySwM_228.2602 Anthoceros agrestis HOM05D006852 ORTHO05D008585 4.8e-60 235.3 190 58.9
Cc02_g28030 Coffea canephora HOM05D006852 ORTHO05D008585 4.8e-60 235.3 148 73.0
TAR633G0701 Trochodendron aralioides HOM05D006852 ORTHO05D008585 1.4e-59 233.8 146 72.6
CSS0037243 Camellia sinensis var. sinensis HOM05D006852 ORTHO05D008585 1.6e-55 220.3 281 47.0
CSS0019030 Camellia sinensis var. sinensis HOM05D006852 ORTHO05D008585 1.0e-54 217.6 190 61.6
SGA_v2.0_scaffold161G37817 Striga asiatica HOM05D006852 ORTHO05D008585 1.8e-54 216.9 205 55.6
Hund18974 Selenicereus undatus HOM05D006852 ORTHO05D008585 8.7e-54 214.5 301 44.5
MBI04_g36071_MAGBIO Magnolia biondii HOM05D006852 ORTHO05D008585 5.6e-53 211.8 177 62.7
arahy.Tifrunner.gnm1.ann1.2WG9D2 Arachis hypogaea HOM05D006852 ORTHO05D008585 6.9e-51 204.9 359 37.9
SalBow6G4338 Salvia bowleyana HOM05D006852 ORTHO05D008585 4.2e-48 195.7 167 56.9
Hma1.2p1_0293F.1_g116050 Hydrangea macrophylla HOM05D006852 ORTHO05D008585 3.5e-47 192.6 125 71.2
SalBow6G3774 Salvia bowleyana HOM05D006852 ORTHO05D008585 5.1e-46 188.7 131 67.2
Haze_03202 Corylus avellana HOM05D006852 ORTHO05D008585 6.7e-46 188.3 154 61.7
Cre07.g336250 Chlamydomonas reinhardtii HOM05D006852 ORTHO05D008585 5.7e-45 185.3 190 49.5
GSVIVG01032100001 Vitis vinifera HOM05D006852 ORTHO05D008585 1.6e-44 183.7 102 83.3
CBR_g4609 Chara braunii HOM05D006852 ORTHO05D008585 1.1e-37 161.0 137 56.9
SMO239G0058 Selaginella moellendorffii HOM05D006852 ORTHO05D008585 1.1e-37 161.0 114 66.7
Oeu049501.1 Olea europaea HOM05D006852 ORTHO05D008585 1.5e-37 160.6 115 67.8
Migut.N01601 Erythranthe guttata HOM05D006852 ORTHO05D008585 8.5e-33 144.8 98 68.4
MD02G1310300 Malus domestica HOM05D006852 ORTHO05D008585 5.7e-29 132.1 145 49.7
CDE02G4017 Ceratophyllum demersum HOM05D006852 ORTHO05D008585 2.6e-26 123.2 81 70.4
QL11p002033 Quercus lobata HOM05D006852 ORTHO05D008585 3.6e-23 112.8 107 57.9
QL11p002055 Quercus lobata HOM05D006852 ORTHO05D008585 2.4e-19 100.1 99 55.6
QL11p001483 Quercus lobata HOM05D000005 ORTHO05D000012 2.0e-18 97.1 112 50.0
C03p92530 Brassica napus HOM05D006852 ORTHO05D008585 1.2e-13 81.3 119 46.2
Cc02_g28050 Coffea canephora HOM05D006852 ORTHO05D008585 8.5e-09 65.1 53 60.4
CDE02G1038 Ceratophyllum demersum HOM05D005011 ORTHO05D006443 1.4e-06 57.8 48 64.6
Migut.N01602 Erythranthe guttata HOM05D006852 ORTHO05D008585 4.0e-06 56.2 33 81.8


User provided reference genes

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