Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_009474 Vanilla planifolia HOM05D004733 ORTHO05D005925 0.0e+00 1429.5 710 100.0
Nn5g29624 Nelumbo nucifera HOM05D004733 ORTHO05D005925 6.6e-227 791.2 822 52.6
MBI14_g08060_MAGBIO Magnolia biondii HOM05D004733 ORTHO05D005925 4.3e-226 788.5 822 52.3
CSS0026274 Camellia sinensis var. sinensis HOM05D004733 ORTHO05D005925 4.8e-217 758.4 820 49.9
Actinidia36563 Actinidia chinensis HOM05D004733 ORTHO05D005925 3.4e-215 752.3 820 49.5
PSO541G3573 Papaver somniferum HOM05D004733 ORTHO05D005925 2.4e-213 746.1 823 51.0
Aqoxy6G01122 Aquilegia oxysepala HOM05D004733 ORTHO05D005925 1.2e-212 743.8 832 48.8
PSO675G5282 Papaver somniferum HOM05D004733 ORTHO05D005925 1.0e-211 740.7 823 50.7
GSVIVG01018952001 Vitis vinifera HOM05D004733 ORTHO05D005925 2.1e-209 733.0 830 49.5
Zm00001eb139270 Zea mays HOM05D004733 ORTHO05D005925 5.3e-208 728.4 815 47.6
MD02G1146900 Malus domestica HOM05D004733 ORTHO05D005925 1.0e-206 724.2 820 49.1
ATR0665G204 Amborella trichopoda HOM05D004733 ORTHO05D005925 1.7e-206 723.4 817 48.3
Sc03g0003000 Simmondsia chinensis HOM05D004733 ORTHO05D005925 5.5e-205 718.4 824 48.1
Gohir.D11G190600 Gossypium hirsutum HOM05D004733 ORTHO05D005925 3.5e-204 715.7 810 48.1
Atru.chr3.583 Acer truncatum HOM05D004733 ORTHO05D005925 1.3e-203 713.8 820 47.9
Ciclev10024776m.g Citrus clementina HOM05D004733 ORTHO05D005925 1.8e-203 713.4 819 48.5
Gohir.A11G184100 Gossypium hirsutum HOM05D004733 ORTHO05D005925 1.8e-203 713.4 810 48.0
Gorai.007G203100 Gossypium raimondii HOM05D004733 ORTHO05D005925 2.3e-203 713.0 810 48.0
Duzib187G1802 Durio zibethinus HOM05D004733 ORTHO05D005925 3.0e-203 712.6 794 48.6
Prupe.7G155300 Prunus persica HOM05D004733 ORTHO05D005925 5.7e-202 708.4 824 47.8
QL04p047829 Quercus lobata HOM05D004733 ORTHO05D005925 7.4e-202 708.0 853 46.9
CiPaw.02G018200 Carya illinoinensis HOM05D004733 ORTHO05D005925 3.7e-201 705.7 818 48.0
CDE02G4373 Ceratophyllum demersum HOM05D004733 ORTHO05D005925 3.7e-201 705.7 823 48.5
Lj4A201T52 Lonicera japonica HOM05D004733 ORTHO05D005925 4.8e-201 705.3 902 45.1
EL10Ac6g15557 Beta vulgaris HOM05D004733 ORTHO05D005925 6.3e-201 704.9 819 48.0
FvH4_1g13250 Fragaria vesca HOM05D004733 ORTHO05D005925 1.4e-200 703.7 818 47.4
Thecc.01G034700 Theobroma cacao HOM05D004733 ORTHO05D005925 2.4e-200 703.0 811 48.2
Rhsim02G0060300 Rhododendron simsii HOM05D004733 ORTHO05D005925 4.1e-200 702.2 898 45.0
arahy.Tifrunner.gnm1.ann1.VZ5KK1 Arachis hypogaea HOM05D004733 ORTHO05D005925 5.3e-200 701.8 821 47.4
Manes.02G094400 Manihot esculenta HOM05D004733 ORTHO05D005925 5.3e-200 701.8 818 47.2
Potri.007G024600 Populus trichocarpa HOM05D004733 ORTHO05D005925 2.0e-199 699.9 821 48.1
Hund16432 Selenicereus undatus HOM05D004733 ORTHO05D005925 2.0e-199 699.9 857 46.0
CANSAT78G0304 Cannabis sativa HOM05D004733 ORTHO05D005925 2.6e-199 699.5 812 46.8
arahy.Tifrunner.gnm1.ann1.6U5FTL Arachis hypogaea HOM05D004733 ORTHO05D005925 5.0e-198 695.3 821 47.0
Cfa004311 Carpinus fangiana HOM05D004733 ORTHO05D005925 5.0e-198 695.3 824 47.8
FAN19G0915 Fragaria x ananassa HOM05D004733 ORTHO05D005925 8.5e-198 694.5 818 47.2
arahy.Tifrunner.gnm1.ann1.VB3WEH Arachis hypogaea HOM05D004733 ORTHO05D005925 1.9e-197 693.3 825 47.2
RcHm_v2.0_Chr2g0101431 Rosa chinensis HOM05D004733 ORTHO05D005925 3.6e-196 689.1 819 47.0
Cpa.g.sc6.117 Carica papaya HOM05D004733 ORTHO05D005925 6.1e-196 688.3 834 46.6
AUR62004057 Chenopodium quinoa HOM05D004733 ORTHO05D005925 7.9e-196 688.0 815 47.4
PGR119G1063 Punica granatum HOM05D004733 ORTHO05D005925 3.0e-195 686.0 822 47.0
THA.LOC104809497 Tarenaya hassleriana HOM05D004733 ORTHO05D005925 3.0e-195 686.0 823 46.5
Medtr5g020190 Medicago truncatula HOM05D004733 ORTHO05D005925 6.7e-195 684.9 820 46.3
Sp7g34280 Schrenkiella parvula HOM05D004733 ORTHO05D005925 1.1e-194 684.1 820 46.8
Lj1g0005862 Lotus japonicus HOM05D004733 ORTHO05D005925 1.6e-193 680.2 818 46.0
Psat2g159520 Pisum sativum HOM05D004733 ORTHO05D005925 2.2e-193 679.9 822 45.7
Cc03_g11520 Coffea canephora HOM05D004733 ORTHO05D005925 3.7e-193 679.1 824 46.6
Lalb_Chr16g0377811 Lupinus albus HOM05D004733 ORTHO05D005925 1.1e-192 677.6 820 46.2
VMungo1215G0507 Vigna mungo HOM05D004733 ORTHO05D005925 1.1e-192 677.6 818 46.0
Ah.03g140900 Amaranthus hybridus HOM05D004733 ORTHO05D005925 3.1e-192 676.0 815 46.6
Solyc02g085230.3 Solanum lycopersicum HOM05D004733 ORTHO05D005925 3.1e-192 676.0 815 45.2
COL.COLO4_08906 Corchorus olitorius HOM05D004733 ORTHO05D005925 6.9e-192 674.9 802 47.1
Sopen02g029930 Solanum pennellii HOM05D004733 ORTHO05D005925 6.9e-192 674.9 815 45.0
Dinv39990 Davidia involucrata HOM05D004733 ORTHO05D005925 2.0e-191 673.3 846 46.1
A08p22270 Brassica napus HOM05D004733 ORTHO05D005925 2.6e-191 672.9 820 47.0
BraA08t34186Z Brassica rapa HOM05D004733 ORTHO05D005925 2.6e-191 672.9 820 47.0
Carub.0002s0104 Capsella rubella HOM05D004733 ORTHO05D005925 2.6e-191 672.9 820 45.4
C03p80050 Brassica napus HOM05D004733 ORTHO05D005925 3.4e-191 672.5 820 46.8
Phvul.002G030700 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 3.4e-191 672.5 817 45.7
BolC3t20259H Brassica oleracea HOM05D004733 ORTHO05D005925 4.5e-191 672.2 820 46.8
Glyma.11G068600 Glycine max HOM05D004733 ORTHO05D005925 3.8e-190 669.1 821 45.4
AL2G11330 Arabidopsis lyrata HOM05D004733 ORTHO05D005925 1.4e-189 667.2 822 45.5
Glyma.01G176400 Glycine max HOM05D004733 ORTHO05D005925 2.5e-189 666.4 820 45.4
AUR62007571 Chenopodium quinoa HOM05D004733 ORTHO05D005925 1.2e-188 664.1 848 45.8
FAN23G1660 Fragaria x ananassa HOM05D004733 ORTHO05D005925 1.8e-187 660.2 818 45.6
TAR625G0290 Trochodendron aralioides HOM05D004733 ORTHO05D005925 1.8e-187 660.2 761 49.9
CARHR047390 Cardamine hirsuta HOM05D004733 ORTHO05D005925 3.9e-187 659.1 821 45.6
MSTRG.23523 Avicennia marina HOM05D004733 ORTHO05D005925 6.7e-187 658.3 821 45.2
AT1G63810 Arabidopsis thaliana HOM05D004733 ORTHO05D005925 3.3e-186 656.0 820 44.4
Nitab4.5_0001385g0060 Nicotiana tabacum HOM05D004733 ORTHO05D005925 3.3e-186 656.0 815 45.0
Peaxi162Scf00366g00125 Petunia axillaris HOM05D004733 ORTHO05D005925 5.7e-186 655.2 816 44.6
vmacro15553 Vaccinium macrocarpon HOM05D004733 ORTHO05D005925 7.4e-186 654.8 914 43.8
Oeu017201.1 Olea europaea HOM05D004733 ORTHO05D005925 3.7e-185 652.5 865 43.8
Thhalv10024292m.g Eutrema salsugineum HOM05D004733 ORTHO05D005925 1.4e-184 650.6 819 45.1
Migut.H00986 Erythranthe guttata HOM05D004733 ORTHO05D005925 5.3e-184 648.7 823 44.6
MELO3C022270.2 Cucumis melo HOM05D004733 ORTHO05D005925 2.6e-183 646.4 826 45.3
SalBow2G0826 Salvia bowleyana HOM05D004733 ORTHO05D005925 1.7e-182 643.7 822 43.8
CsaV3_6G008550 Cucumis sativus L. HOM05D004733 ORTHO05D005925 8.5e-182 641.3 822 45.7
Sed0013525 Sechium edule HOM05D004733 ORTHO05D005925 8.5e-182 641.3 824 45.0
Nitab4.5_0000178g0060 Nicotiana tabacum HOM05D004733 ORTHO05D005925 1.4e-181 640.6 814 43.9
CsaV3_5G036970 Cucumis sativus L. HOM05D004733 ORTHO05D005925 2.5e-181 639.8 824 45.4
ECA232G2226 Erigeron canadensis HOM05D004733 ORTHO05D005925 5.5e-181 638.6 822 44.9
ClCG06G002580 Citrullus lanatus HOM05D004733 ORTHO05D005925 1.8e-179 633.6 837 44.4
Hma1.2p1_0789F.1_g218380 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 3.3e-178 629.4 840 44.5
HanXRQChr09g0261511 Helianthus annuus HOM05D004733 ORTHO05D005925 4.4e-178 629.0 823 43.7
FAN28G2014 Fragaria x ananassa HOM05D004733 ORTHO05D005925 2.4e-176 623.2 790 45.6
Sabra07G0021700 Salix brachista HOM05D004733 ORTHO05D005925 9.1e-176 621.3 858 43.1
SEGI_35015 Sequoiadendron giganteum HOM05D004733 ORTHO05D005925 9.1e-176 621.3 827 41.6
TWI77G0475 Tripterygium wilfordii HOM05D004733 ORTHO05D005925 8.5e-174 614.8 818 43.8
Lsat_1_v5_gn_4_152020 Lactuca sativa HOM05D004733 ORTHO05D005925 7.5e-170 601.7 813 42.8
BcaC01g00457 Brassica carinata HOM05D004733 ORTHO05D005925 1.8e-168 597.0 819 43.2
Ca_24849_v3 Cicer arietinum L. HOM05D004733 ORTHO05D005925 2.9e-166 589.7 819 42.5
unitig_21.g20953 Utricularia gibba HOM05D004733 ORTHO05D005925 2.2e-145 520.4 685 42.6
A05p29760 Brassica napus HOM05D004733 ORTHO05D005925 1.1e-144 518.1 813 40.3
Pp3c6_25920 Physcomitrium patens HOM05D004733 ORTHO05D005925 3.0e-142 510.0 817 36.8
Eucgr.I02440 Eucalyptus grandis HOM05D004733 ORTHO05D005925 2.3e-139 500.4 626 45.5
DCAR_017293 Daucus carota HOM05D004733 ORTHO05D005925 3.1e-139 500.0 757 41.7
Mapoly0060s0020 Marchantia polymorpha HOM05D004733 ORTHO05D005925 2.9e-137 493.4 828 36.2
A05p29530 Brassica napus HOM05D004733 ORTHO05D005925 9.2e-120 435.3 722 38.4
Hma1.2p1_0789F.1_g218390 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 4.6e-111 406.4 512 45.3
TPR.G22288 Trifolium pratense HOM05D004733 ORTHO05D005925 6.6e-110 402.5 373 55.5
SGA_v2.0_scaffold54G19532 Striga asiatica HOM05D004733 ORTHO05D005925 1.2e-106 391.7 663 36.3
SMO347G0575 Selaginella moellendorffii HOM05D004733 ORTHO05D005925 9.9e-106 388.7 802 33.7
Haze_15084 Corylus avellana HOM05D004733 ORTHO05D005925 4.6e-103 379.8 669 37.2
CBR_g37736 Chara braunii HOM05D004733 ORTHO05D000048 2.6e-98 364.0 800 31.5
SEGI_33720 Sequoiadendron giganteum HOM05D004733 ORTHO05D005925 3.8e-97 360.1 381 48.8
Os12g0166500 Oryza sativa ssp. japonica HOM05D004733 ORTHO05D005925 1.3e-94 351.7 375 47.2
QL02p065465 Quercus lobata HOM05D004733 ORTHO05D005925 1.8e-94 351.3 379 50.9
SHI09115 Sapria himalayana HOM05D004733 ORTHO05D005925 1.2e-90 338.6 597 37.0
Aa31LG3G3780 Aethionema arabicum HOM05D004733 ORTHO05D005925 4.5e-90 336.7 468 43.6
BcaNung05455 Brassica carinata HOM05D004733 ORTHO05D005925 1.4e-88 331.6 511 39.9
CAN.G358.91 Capsicum annuum HOM05D004733 ORTHO05D005925 1.2e-87 328.6 295 52.5
MD15G1261100 Malus domestica HOM05D004733 ORTHO05D005925 3.9e-86 323.6 304 56.2
CAN.G3433.1 Capsicum annuum HOM05D004733 ORTHO05D005925 2.0e-82 311.2 422 43.6
CAN.G358.87 Capsicum annuum HOM05D004733 ORTHO05D005925 2.0e-82 311.2 422 44.1
QL06p046231 Quercus lobata HOM05D004733 ORTHO05D005925 2.2e-81 307.8 452 43.1
MCO15G114 Micromonas commoda HOM05D004733 ORTHO05D005925 8.2e-76 289.3 722 29.5
TPR.G8389 Trifolium pratense HOM05D004733 ORTHO05D005925 1.1e-75 288.9 334 45.5
AagrBONN_evm.TU.Sc2ySwM_228.918 Anthoceros agrestis HOM05D004733 ORTHO05D005925 1.3e-73 282.0 615 30.4
Actinidia12125 Actinidia chinensis HOM05D004733 ORTHO05D005925 7.7e-58 229.6 272 44.1
GSVIVG01024291001 Vitis vinifera HOM05D004733 ORTHO05D005925 2.7e-47 194.5 177 58.8
Cre07.g332800 Chlamydomonas reinhardtii HOM05D004733 ORTHO05D005925 1.8e-46 191.8 987 22.7
Ca_24844_v3 Cicer arietinum L. HOM05D004733 ORTHO05D005925 1.1e-43 182.6 293 35.8
arahy.Tifrunner.gnm1.ann1.VLQ9MW Arachis hypogaea HOM05D004733 ORTHO05D005925 1.2e-42 179.1 243 42.4
Aa31LG3G3760 Aethionema arabicum HOM05D004733 ORTHO05D005925 9.5e-40 169.5 162 55.6
RcHm_v2.0_Chr2g0101471 Rosa chinensis HOM05D004733 ORTHO05D005925 1.8e-38 165.2 148 58.1
AagrBONN_evm.TU.Sc2ySwM_228.917 Anthoceros agrestis HOM05D004733 ORTHO05D005925 3.7e-36 157.5 187 42.8
arahy.Tifrunner.gnm1.ann1.T3TR42 Arachis hypogaea HOM05D004733 ORTHO05D005925 2.7e-34 151.4 216 40.3
Cfa025732 Carpinus fangiana HOM05D004733 ORTHO05D005925 5.2e-30 137.1 846 23.0
PRCOL_00003562 Prasinoderma coloniale HOM05D004733 ORTHO05D005925 5.8e-29 133.7 918 22.4
Aa31LG3G3770 Aethionema arabicum HOM05D004733 ORTHO05D005925 1.4e-22 112.5 119 50.4
C07p61790 Brassica napus HOM05D004733 ORTHO05D005925 1.4e-19 102.4 301 29.9
TPR.G36480 Trifolium pratense HOM05D004733 ORTHO05D008348 7.8e-18 96.7 81 53.1
TPR.G23227 Trifolium pratense HOM05D004733 ORTHO05D006027 1.9e-16 92.0 60 75.0
Thhalv10021392m.g Eutrema salsugineum HOM05D004733 ORTHO05D005925 3.3e-16 91.3 98 55.1
QL06p046242 Quercus lobata HOM05D004733 ORTHO05D005925 2.8e-15 88.2 102 46.1
C07p61800 Brassica napus HOM05D004733 ORTHO05D005925 3.6e-15 87.8 90 55.6
Haze_15083 Corylus avellana HOM05D004733 ORTHO05D005925 6.4e-12 77.0 99 41.4
arahy.Tifrunner.gnm1.ann1.1JA7FP Arachis hypogaea HOM05D004733 ORTHO05D005925 1.4e-11 75.9 74 52.7
Phvul.011G118815 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 1.1e-08 66.2 149 30.2
C05p48270 Brassica napus HOM05D004733 ORTHO05D005925 3.1e-06 58.2 126 29.4


User provided reference genes

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