Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_009424 Vanilla planifolia HOM05D004436 ORTHO05D005179 8.9e-243 843.2 429 100.0
TAR375G0086 Trochodendron aralioides HOM05D004436 ORTHO05D005179 3.7e-79 299.7 409 45.5
Eucgr.F03167 Eucalyptus grandis HOM05D004436 ORTHO05D005179 1.3e-76 291.2 404 43.8
Hma1.2p1_0496F.1_g166100 Hydrangea macrophylla HOM05D004436 ORTHO05D005179 2.2e-76 290.4 415 43.4
CANSAT56G1493 Cannabis sativa HOM05D004436 ORTHO05D005179 5.0e-76 289.3 400 43.2
CSS0015890 Camellia sinensis var. sinensis HOM05D004436 ORTHO05D005179 9.3e-75 285.0 400 42.5
CDE07G0038 Ceratophyllum demersum HOM05D004436 ORTHO05D005179 3.5e-74 283.1 418 38.0
GSVIVG01016817001 Vitis vinifera HOM05D004436 ORTHO05D005179 1.0e-73 281.6 405 42.7
CiPaw.05G181900 Carya illinoinensis HOM05D004436 ORTHO05D005179 1.3e-73 281.2 407 42.0
Duzib205G0267 Durio zibethinus HOM05D004436 ORTHO05D005179 1.3e-73 281.2 423 41.6
Actinidia32167 Actinidia chinensis HOM05D004436 ORTHO05D005179 2.3e-73 280.4 410 41.2
PGR119G1065 Punica granatum HOM05D004436 ORTHO05D005179 3.9e-73 279.6 415 40.7
Hund20819 Selenicereus undatus HOM05D004436 ORTHO05D005179 1.1e-72 278.1 399 42.9
CiPaw.01G221800 Carya illinoinensis HOM05D004436 ORTHO05D005179 2.5e-72 276.9 407 41.8
Thecc.03G227200 Theobroma cacao HOM05D004436 ORTHO05D005179 2.5e-72 276.9 424 39.9
MELO3C024372.2 Cucumis melo HOM05D004436 ORTHO05D005179 5.7e-72 275.8 405 41.7
Nitab4.5_0000035g0090 Nicotiana tabacum HOM05D004436 ORTHO05D005179 5.7e-72 275.8 418 41.6
TWI23G0436 Tripterygium wilfordii HOM05D004436 ORTHO05D005179 5.7e-72 275.8 410 42.4
vmacro22224 Vaccinium macrocarpon HOM05D004436 ORTHO05D005179 5.7e-72 275.8 407 44.2
Dinv03512 Davidia involucrata HOM05D004436 ORTHO05D005179 7.4e-72 275.4 413 41.4
Rhsim08G0236100 Rhododendron simsii HOM05D004436 ORTHO05D005179 2.2e-71 273.9 409 42.8
Gorai.003G182300 Gossypium raimondii HOM05D004436 ORTHO05D005179 2.8e-71 273.5 407 40.5
Gohir.D03G171700 Gossypium hirsutum HOM05D004436 ORTHO05D005179 3.7e-71 273.1 407 40.3
CsaV3_7G034640 Cucumis sativus L. HOM05D004436 ORTHO05D005179 1.8e-70 270.8 405 40.7
Sc12g0010440 Simmondsia chinensis HOM05D004436 ORTHO05D005179 2.4e-70 270.4 429 39.9
CAN.G540.4 Capsicum annuum HOM05D004436 ORTHO05D005179 4.1e-70 269.6 405 41.5
ClCG09G000840 Citrullus lanatus HOM05D004436 ORTHO05D005179 4.1e-70 269.6 408 41.4
Potri.001G198600 Populus trichocarpa HOM05D004436 ORTHO05D005179 1.5e-69 267.7 427 40.7
Gohir.A03G000500 Gossypium hirsutum HOM05D004436 ORTHO05D005179 2.6e-69 266.9 407 40.0
PGSC0003DMG400016304 Solanum tuberosum HOM05D004436 ORTHO05D005179 2.6e-69 266.9 427 39.6
Glyma.15G165300 Glycine max HOM05D004436 ORTHO05D005179 3.4e-69 266.5 395 41.8
Lalb_Chr08g0233321 Lupinus albus HOM05D004436 ORTHO05D005179 5.9e-69 265.8 396 40.9
Medtr2g037880 Medicago truncatula HOM05D004436 ORTHO05D005179 5.9e-69 265.8 401 40.4
Sopen06g018390 Solanum pennellii HOM05D004436 ORTHO05D005179 5.9e-69 265.8 427 39.6
Lj5A40G74 Lonicera japonica HOM05D004436 ORTHO05D005179 7.7e-69 265.4 394 41.9
Manes.04G142200 Manihot esculenta HOM05D004436 ORTHO05D005179 1.0e-68 265.0 426 41.5
Medtr7g104810 Medicago truncatula HOM05D004436 ORTHO05D005179 1.3e-68 264.6 402 40.8
Oeu047041.1 Olea europaea HOM05D004436 ORTHO05D005179 1.7e-68 264.2 403 40.7
Oeu044709.1 Olea europaea HOM05D004436 ORTHO05D005179 2.2e-68 263.8 409 40.6
CSS0033207 Camellia sinensis var. sinensis HOM05D004436 ORTHO05D005179 2.9e-68 263.5 400 40.8
Solyc06g053330.4 Solanum lycopersicum HOM05D004436 ORTHO05D005179 6.5e-68 262.3 427 39.1
Cpa.g.sc25.86 Carica papaya HOM05D004436 ORTHO05D005179 2.5e-67 260.4 423 39.7
Dinv30366 Davidia involucrata HOM05D004436 ORTHO05D005179 2.5e-67 260.4 373 42.6
Zm00001eb166800 Zea mays HOM05D004436 ORTHO05D005179 4.2e-67 259.6 393 41.5
DCAR_026403 Daucus carota HOM05D004436 ORTHO05D005179 5.5e-67 259.2 400 39.0
Ciclev10025597m.g Citrus clementina HOM05D004436 ORTHO05D005179 9.4e-67 258.5 404 40.1
Thhalv10020760m.g Eutrema salsugineum HOM05D004436 ORTHO05D005179 1.2e-66 258.1 398 40.5
MSTRG.22562 Avicennia marina HOM05D004436 ORTHO05D005179 1.4e-65 254.6 419 40.3
Nitab4.5_0012713g0010 Nicotiana tabacum HOM05D004436 ORTHO05D005179 1.4e-65 254.6 399 40.1
THA.LOC104804933 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 1.8e-65 254.2 403 40.7
COL.COLO4_30482 Corchorus olitorius HOM05D004436 ORTHO05D005179 2.3e-65 253.8 413 40.7
Prupe.3G044800 Prunus persica HOM05D004436 ORTHO05D005179 3.9e-65 253.1 406 38.2
Aa31LG8G1130 Aethionema arabicum HOM05D004436 ORTHO05D005179 6.7e-65 252.3 406 39.4
Lj6g0016044 Lotus japonicus HOM05D004436 ORTHO05D005179 8.8e-65 251.9 401 39.2
Atru.chr1.3808 Acer truncatum HOM05D004436 ORTHO05D005179 1.5e-64 251.1 383 40.7
Medtr2g037460 Medicago truncatula HOM05D004436 ORTHO05D005179 2.0e-64 250.8 397 39.5
HanXRQChr10g0312341 Helianthus annuus HOM05D004436 ORTHO05D005179 3.3e-64 250.0 401 39.2
Psat1g144000 Pisum sativum HOM05D004436 ORTHO05D005179 3.3e-64 250.0 392 40.6
Sed0007780 Sechium edule HOM05D004436 ORTHO05D005179 4.3e-64 249.6 426 37.6
Phvul.009G236700 Phaseolus vulgaris HOM05D004436 ORTHO05D005179 5.7e-64 249.2 399 39.8
Ca_02096_v3 Cicer arietinum L. HOM05D004436 ORTHO05D005179 1.7e-63 247.7 402 38.8
Sp3g12180 Schrenkiella parvula HOM05D004436 ORTHO05D005179 2.2e-63 247.3 398 39.4
Sed0020704 Sechium edule HOM05D004436 ORTHO05D005179 4.8e-63 246.1 401 38.9
Os11g0615100 Oryza sativa ssp. japonica HOM05D004436 ORTHO05D005179 6.3e-63 245.7 390 40.8
RcHm_v2.0_Chr2g0144531 Rosa chinensis HOM05D004436 ORTHO05D005179 8.2e-63 245.4 407 39.6
PSO135G0558 Papaver somniferum HOM05D004436 ORTHO05D005179 1.4e-62 244.6 414 38.2
Sabra01G0155800 Salix brachista HOM05D004436 ORTHO05D005179 1.4e-62 244.6 432 38.4
Lsat_1_v5_gn_5_135221 Lactuca sativa HOM05D004436 ORTHO05D005179 1.8e-62 244.2 401 38.2
PSO724G1089 Papaver somniferum HOM05D004436 ORTHO05D005179 1.8e-62 244.2 410 38.5
Peaxi162Scf00943g00014 Petunia axillaris HOM05D004436 ORTHO05D005179 3.1e-62 243.4 431 36.7
Manes.11G023100 Manihot esculenta HOM05D004436 ORTHO05D005179 4.1e-62 243.0 437 39.1
Aqoxy2G00706 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 6.9e-62 242.3 410 38.0
ECA234G4408 Erigeron canadensis HOM05D004436 ORTHO05D005179 9.1e-62 241.9 392 38.5
FAN09G2135 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.2e-61 241.5 405 40.5
FvH4_6g47280 Fragaria vesca HOM05D004436 ORTHO05D005179 1.5e-61 241.1 408 38.7
Haze_15997 Corylus avellana HOM05D004436 ORTHO05D005179 2.6e-61 240.4 445 36.6
arahy.Tifrunner.gnm1.ann1.4RDH3B Arachis hypogaea HOM05D004436 ORTHO05D005179 4.5e-61 239.6 406 37.7
FAN02G3564 Fragaria x ananassa HOM05D004436 ORTHO05D005179 7.7e-61 238.8 405 40.2
FvH4_6g34180 Fragaria vesca HOM05D004436 ORTHO05D005179 1.7e-60 237.7 405 40.0
FAN05G5343 Fragaria x ananassa HOM05D004436 ORTHO05D005179 2.2e-60 237.3 405 40.0
Peaxi162Scf00647g00219 Petunia axillaris HOM05D004436 ORTHO05D005179 2.2e-60 237.3 404 36.6
arahy.Tifrunner.gnm1.ann1.0TY6IG Arachis hypogaea HOM05D004436 ORTHO05D005179 5.0e-60 236.1 405 37.5
RcHm_v2.0_Chr2g0166351 Rosa chinensis HOM05D004436 ORTHO05D005179 5.0e-60 236.1 407 38.1
EL10Ac7g16378 Beta vulgaris HOM05D004436 ORTHO05D005179 6.5e-60 235.7 393 39.9
EL10Ac7g16380 Beta vulgaris HOM05D004436 ORTHO05D005179 6.5e-60 235.7 398 41.5
COL.COLO4_17027 Corchorus olitorius HOM05D004436 ORTHO05D005179 8.5e-60 235.3 369 41.7
MD09G1187900 Malus domestica HOM05D004436 ORTHO05D005179 8.5e-60 235.3 409 37.2
BcaC09g48383 Brassica carinata HOM05D004436 ORTHO05D005179 2.5e-59 233.8 399 38.6
C01p50660 Brassica napus HOM05D004436 ORTHO05D005179 2.5e-59 233.8 399 38.6
BolC1t05015H Brassica oleracea HOM05D004436 ORTHO05D005179 2.5e-59 233.8 399 38.6
Migut.D00948 Erythranthe guttata HOM05D004436 ORTHO05D005179 2.5e-59 233.8 418 37.8
TPR.G13789 Trifolium pratense HOM05D004436 ORTHO05D005179 4.2e-59 233.0 403 37.7
SGA_v2.0_scaffold68G22895 Striga asiatica HOM05D004436 ORTHO05D005179 4.7e-58 229.6 400 38.5
Carub.0003s1351 Capsella rubella HOM05D004436 ORTHO05D005179 7.9e-58 228.8 405 35.1
BraA01t04010Z Brassica rapa HOM05D004436 ORTHO05D005179 1.8e-57 227.6 394 38.1
CARHR088750 Cardamine hirsuta HOM05D004436 ORTHO05D005179 3.0e-57 226.9 416 34.4
FAN26G0630 Fragaria x ananassa HOM05D004436 ORTHO05D005179 3.0e-57 226.9 405 37.8
ATR0762G049 Amborella trichopoda HOM05D004436 ORTHO05D005179 3.9e-57 226.5 426 37.6
A01p39710 Brassica napus HOM05D004436 ORTHO05D005179 6.7e-57 225.7 394 37.8
Rhsim10G0150900 Rhododendron simsii HOM05D004436 ORTHO05D005179 2.0e-56 224.2 473 35.9
FAN14G2695 Fragaria x ananassa HOM05D004436 ORTHO05D005179 9.7e-56 221.9 441 37.0
AUR62009860 Chenopodium quinoa HOM05D004436 ORTHO05D005179 1.3e-55 221.5 407 36.9
BcaB04g20967 Brassica carinata HOM05D004436 ORTHO05D005179 4.8e-55 219.5 394 37.8
Actinidia21779 Actinidia chinensis HOM05D004436 ORTHO05D005179 3.1e-54 216.9 420 35.7
Ah.07g197300 Amaranthus hybridus HOM05D004436 ORTHO05D005179 1.5e-53 214.5 401 35.9
AT3G13940 Arabidopsis thaliana HOM05D004436 ORTHO05D005179 5.9e-53 212.6 440 33.9
AL3G26120 Arabidopsis lyrata HOM05D004436 ORTHO05D005179 1.3e-52 211.5 429 34.0
FAN24G2018 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.6e-50 204.5 389 35.5
QL05p009436 Quercus lobata HOM05D004436 ORTHO05D005179 1.6e-50 204.5 615 28.1
unitig_26.g9010 Utricularia gibba HOM05D000572 ORTHO05D002399 4.7e-50 203.0 397 35.3
AUR62001510 Chenopodium quinoa HOM05D004436 ORTHO05D005179 1.8e-49 201.1 433 33.7
Nn6g35749 Nelumbo nucifera HOM05D004436 ORTHO05D005179 1.4e-46 191.4 428 34.1
MD17G1172300 Malus domestica HOM05D004436 ORTHO05D005179 4.5e-45 186.4 323 37.2
Cc04_g01610 Coffea canephora HOM05D004436 ORTHO05D005179 5.0e-44 183.0 330 35.8
Pp3c8_24340 Physcomitrium patens HOM05D004436 ORTHO05D005179 2.5e-43 180.6 422 34.1
Nitab4.5_0004287g0020 Nicotiana tabacum HOM05D004436 ORTHO05D005179 5.2e-41 172.9 395 32.2
AagrBONN_evm.TU.Sc2ySwM_368.2707 Anthoceros agrestis HOM05D004436 ORTHO05D005179 2.6e-40 170.6 398 31.9
Ca_27339_v3 Cicer arietinum L. HOM05D004436 ORTHO05D005179 7.5e-40 169.1 292 39.0
Peaxi162Scf00060g02815 Petunia axillaris HOM05D004436 ORTHO05D005179 7.5e-40 169.1 404 31.2
THA.LOC104822769 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 1.6e-37 161.4 229 44.1
FvH4_2g14600 Fragaria vesca HOM05D004436 ORTHO05D005179 7.2e-35 152.5 311 33.1
Carub.0003s3547 Capsella rubella HOM05D004436 ORTHO05D005179 3.6e-34 150.2 366 31.4
TPR.G16505 Trifolium pratense HOM05D004436 ORTHO05D005179 2.3e-33 147.5 226 38.9
SEGI_22335 Sequoiadendron giganteum HOM05D004436 ORTHO05D005179 2.4e-30 137.5 261 35.6
SEGI_28110 Sequoiadendron giganteum HOM05D004436 ORTHO05D005179 1.1e-27 128.6 310 32.9
Lj6g0018808 Lotus japonicus HOM05D004436 ORTHO05D005179 2.5e-27 127.5 237 35.4
Aqoxy7G00272 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 6.1e-26 122.9 215 39.1
Ah.08g216510 Amaranthus hybridus HOM05D004436 ORTHO05D005179 9.8e-24 115.5 331 31.4
THA.LOC104822775 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 3.7e-23 113.6 122 51.6
DCAR_023423 Daucus carota HOM05D004436 ORTHO05D005179 4.1e-22 110.2 244 33.2
FAN27G1625 Fragaria x ananassa HOM05D004436 ORTHO05D005179 4.6e-21 106.7 373 26.5
Mapoly0063s0055 Marchantia polymorpha HOM05D004436 ORTHO05D005179 5.9e-21 106.3 343 28.0
FAN14G5104 Fragaria x ananassa HOM05D002326 ORTHO05D005179 7.8e-21 105.9 242 32.2
ATR0185G001 Amborella trichopoda HOM05D004436 ORTHO05D005179 1.7e-20 104.8 142 45.1
CBR_g45967 Chara braunii HOM05D004436 ORTHO05D005179 9.5e-19 99.0 444 26.4
TPR.G16496 Trifolium pratense HOM05D004436 ORTHO05D005179 3.1e-17 94.0 103 48.5
Aqoxy2G02914 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 1.2e-16 92.0 137 40.9
SMO144G0124 Selaginella moellendorffii HOM05D004436 ORTHO05D005179 1.0e-12 79.0 101 43.6
FAN09G3702 Fragaria x ananassa HOM05D002326 ORTHO05D005179 2.5e-11 74.3 163 33.7
SEGI_36774 Sequoiadendron giganteum HOM05D004436 ORTHO05D005179 3.3e-11 73.9 117 39.3
FAN15G1241 Fragaria x ananassa HOM05D004436 ORTHO05D005179 3.6e-10 70.5 119 34.5
FAN02G4131 Fragaria x ananassa HOM05D002326 ORTHO05D005179 6.2e-10 69.7 164 34.1
Aqoxy2G02915 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 1.1e-09 68.9 93 41.9
Cre01.g070567 Chlamydomonas reinhardtii HOM05D004436 ORTHO05D005179 1.4e-09 68.6 432 21.3
FAN20G3048 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.8e-09 68.2 125 32.0
Oeu004353.1 Olea europaea HOM05D004436 ORTHO05D005179 2.3e-09 67.8 99 39.4
Dinv21190 Davidia involucrata HOM05D004436 ORTHO05D005179 7.5e-08 62.8 96 39.6
Oeu027301.1 Olea europaea HOM05D004436 ORTHO05D005179 2.9e-07 60.8 49 57.1
Haze_06394 Corylus avellana HOM05D004436 ORTHO05D005179 4.9e-07 60.1 172 30.2
AUR62000997 Chenopodium quinoa HOM05D004436 ORTHO05D005179 6.4e-07 59.7 146 32.9
AL1G64440 Arabidopsis lyrata HOM05D004436 ORTHO05D005179 1.4e-06 58.5 171 25.7
PGSC0003DMG400002436 Solanum tuberosum HOM05D004436 ORTHO05D005179 1.4e-06 58.5 67 46.3


User provided reference genes

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