Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_009343 Vanilla planifolia HOM05D002924 ORTHO05D003122 4.4e-71 271.2 134 100.0
HPP92_009444 Vanilla planifolia HOM05D002924 ORTHO05D003122 4.8e-62 241.1 134 93.3
HPP92_011075 Vanilla planifolia HOM05D002924 ORTHO05D003122 5.4e-13 78.2 157 41.4
BcaB03g12198 Brassica carinata HOM05D002924 ORTHO05D003122 5.6e-10 68.2 118 43.2
Gohir.A05G147700 Gossypium hirsutum HOM05D002924 ORTHO05D003122 9.6e-10 67.4 108 42.6
COL.COLO4_31051 Corchorus olitorius HOM05D002924 ORTHO05D003122 1.2e-09 67.0 110 39.1
MBI02_g15229_MAGBIO Magnolia biondii HOM05D002924 ORTHO05D003122 1.2e-09 67.0 110 40.0
Medtr8g107300 Medicago truncatula HOM05D002924 ORTHO05D003122 1.6e-09 66.6 108 42.6
Gohir.D10G042800 Gossypium hirsutum HOM05D002924 ORTHO05D003122 2.8e-09 65.9 110 41.8
Gorai.011G045300 Gossypium raimondii HOM05D002924 ORTHO05D003122 2.8e-09 65.9 110 41.8
Gorai.009G154300 Gossypium raimondii HOM05D002924 ORTHO05D003122 3.6e-09 65.5 109 44.0
Medtr2g019190 Medicago truncatula HOM05D002924 ORTHO05D003122 3.6e-09 65.5 125 36.8
TAR626G1845 Trochodendron aralioides HOM05D002924 ORTHO05D003122 3.6e-09 65.5 111 39.6
Gohir.D05G150200 Gossypium hirsutum HOM05D002924 ORTHO05D003122 4.7e-09 65.1 109 41.3
Nitab4.5_0001531g0020 Nicotiana tabacum HOM05D002924 ORTHO05D003122 6.2e-09 64.7 110 45.5
TWI09G0754 Tripterygium wilfordii HOM05D002924 ORTHO05D003122 8.1e-09 64.3 114 41.2
BcaC01g00158 Brassica carinata HOM05D002924 ORTHO05D003122 1.1e-08 63.9 117 40.2
A08p24680 Brassica napus HOM05D002924 ORTHO05D003122 1.1e-08 63.9 117 40.2
BolC3t19897H Brassica oleracea HOM05D002924 ORTHO05D003122 1.1e-08 63.9 117 40.2
BraA08t34423Z Brassica rapa HOM05D002924 ORTHO05D003122 1.1e-08 63.9 117 40.2
Duzib235G1474 Durio zibethinus HOM05D002924 ORTHO05D003122 1.1e-08 63.9 109 38.5
MD10G1260700 Malus domestica HOM05D002924 ORTHO05D003122 1.4e-08 63.5 105 42.9
Nn4g26591 Nelumbo nucifera HOM05D002924 ORTHO05D003122 1.4e-08 63.5 119 39.5
MBI02_g15233_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 1.8e-08 63.2 107 39.3
vmacro03333 Vaccinium macrocarpon HOM05D002924 ORTHO05D003122 2.4e-08 62.8 89 43.8
Gohir.A10G041900 Gossypium hirsutum HOM05D002924 ORTHO05D003122 3.1e-08 62.4 110 40.9
Sed0008794 Sechium edule HOM05D002924 ORTHO05D003122 3.1e-08 62.4 120 41.7
HPP92_011053 Vanilla planifolia HOM05D002924 ORTHO05D003122 3.1e-08 62.4 156 35.3
MBI18_g24474_MAGBIO Magnolia biondii HOM05D002924 ORTHO05D003122 4.0e-08 62.0 74 45.9
QL05p059253 Quercus lobata HOM05D002924 ORTHO05D003122 4.0e-08 62.0 117 36.8
Nitab4.5_0009991g0010 Nicotiana tabacum HOM05D002924 ORTHO05D003122 5.2e-08 61.6 96 44.8
Atru.chr10.1192 Acer truncatum HOM05D002924 ORTHO05D003122 6.8e-08 61.2 101 43.6
VMungo0540G0736 Vigna mungo HOM05D002924 ORTHO05D003122 6.8e-08 61.2 92 42.4
AL1G44040 Arabidopsis lyrata HOM05D002924 ORTHO05D003122 8.9e-08 60.8 125 38.4
Ciclev10017198m.g Citrus clementina HOM05D002924 ORTHO05D003122 8.9e-08 60.8 71 52.1
Thecc.06G148600 Theobroma cacao HOM05D002924 ORTHO05D003122 8.9e-08 60.8 111 37.8
C03p76420 Brassica napus HOM05D002924 ORTHO05D003122 1.2e-07 60.5 117 39.3
FvH4_3g05360 Fragaria vesca HOM05D002924 ORTHO05D003122 1.2e-07 60.5 104 34.6
TAR624G0146 Trochodendron aralioides HOM05D002924 ORTHO05D003122 1.2e-07 60.5 106 39.6
Cc00_g01970 Coffea canephora HOM05D002924 ORTHO05D003122 1.5e-07 60.1 85 45.9
Dinv05213 Davidia involucrata HOM05D002924 ORTHO05D003122 1.5e-07 60.1 79 45.6
MBI02_g15230_MAGBIO Magnolia biondii HOM05D002924 ORTHO05D003122 1.5e-07 60.1 112 38.4
PSO675G3356 Papaver somniferum HOM05D002924 ORTHO05D003122 1.5e-07 60.1 114 37.7
Sp1g26000 Schrenkiella parvula HOM05D002924 ORTHO05D003122 1.5e-07 60.1 116 40.5
Sed0007473 Sechium edule HOM05D002924 ORTHO05D003122 2.0e-07 59.7 108 38.9
Sed0009253 Sechium edule HOM05D002924 ORTHO05D003122 2.0e-07 59.7 94 44.7
TAR488G0001 Trochodendron aralioides HOM05D002924 ORTHO05D003122 2.0e-07 59.7 113 38.1
AT1G30135 Arabidopsis thaliana HOM05D002924 ORTHO05D003122 2.6e-07 59.3 115 40.9
Psat1g189800 Pisum sativum HOM05D002924 ORTHO05D003122 2.6e-07 59.3 118 36.4
TPR.G36164 Trifolium pratense HOM05D002924 ORTHO05D003122 2.6e-07 59.3 118 39.0
Rhsim13G0114700 Rhododendron simsii HOM05D002924 ORTHO05D003122 3.4e-07 58.9 92 43.5
Phvul.006G165800 Phaseolus vulgaris HOM05D002924 ORTHO05D003122 4.4e-07 58.5 88 43.2
Glyma.13G219100 Glycine max HOM05D002924 ORTHO05D003122 5.8e-07 58.2 81 45.7
Gohir.D09G077300 Gossypium hirsutum HOM05D002924 ORTHO05D003122 5.8e-07 58.2 116 38.8
Gorai.006G092400 Gossypium raimondii HOM05D002924 ORTHO05D003122 5.8e-07 58.2 116 38.8
Cpa.g.sc17.12 Carica papaya HOM05D002924 ORTHO05D003122 7.6e-07 57.8 112 37.5
CDE12G0054 Ceratophyllum demersum HOM05D002924 ORTHO05D003122 7.6e-07 57.8 114 35.1
MELO3C007125.2 Cucumis melo HOM05D002924 ORTHO05D003122 7.6e-07 57.8 92 41.3
CsaV3_6G051810 Cucumis sativus L. HOM05D002924 ORTHO05D003122 7.6e-07 57.8 88 42.0
Solyc08g036505.2 Solanum lycopersicum HOM05D002924 ORTHO05D003122 7.6e-07 57.8 106 40.6
QL05p057398 Quercus lobata HOM05D002924 ORTHO05D003122 9.9e-07 57.4 126 34.9
MSTRG.7496 Avicennia marina HOM05D002924 ORTHO05D003122 1.3e-06 57.0 96 41.7
GSVIVG01021514001 Vitis vinifera HOM05D002924 ORTHO05D003122 1.3e-06 57.0 74 47.3
BcaC05g27039 Brassica carinata HOM05D002924 ORTHO05D003122 1.7e-06 56.6 116 38.8
BolC5t31621H Brassica oleracea HOM05D002924 ORTHO05D003122 1.7e-06 56.6 116 38.8
Gohir.A09G077300 Gossypium hirsutum HOM05D002924 ORTHO05D003122 1.7e-06 56.6 102 38.2
Peaxi162Scf00317g00121 Petunia axillaris HOM05D002924 ORTHO05D003122 1.7e-06 56.6 79 43.0
Sopen08g011370 Solanum pennellii HOM05D002924 ORTHO05D003122 1.7e-06 56.6 100 37.0
GSVIVG01007188001 Vitis vinifera HOM05D002924 ORTHO05D003122 1.7e-06 56.6 88 42.0
BcaC01g00164 Brassica carinata HOM05D002924 ORTHO05D003122 2.2e-06 56.2 85 45.9
A05p11050 Brassica napus HOM05D002924 ORTHO05D003122 2.2e-06 56.2 104 35.6
Carub.0001s2837 Capsella rubella HOM05D002924 ORTHO05D003122 2.2e-06 56.2 122 38.5
CDE01G0236 Ceratophyllum demersum HOM05D002924 ORTHO05D003122 2.2e-06 56.2 116 34.5
Glyma.15G093100 Glycine max HOM05D002924 ORTHO05D003122 2.2e-06 56.2 86 41.9
Lalb_Chr15g0086781 Lupinus albus HOM05D002924 ORTHO05D003122 2.2e-06 56.2 85 43.5
Nitab4.5_0001531g0050 Nicotiana tabacum HOM05D002924 ORTHO05D003122 2.2e-06 56.2 86 40.7
Oeu031277.1 Olea europaea HOM05D002924 ORTHO05D003122 2.2e-06 56.2 85 42.4
HPP92_008428 Vanilla planifolia HOM05D018900 ORTHO05D003122 2.2e-06 56.2 96 44.8
BcaC02g11537 Brassica carinata HOM05D002924 ORTHO05D003122 2.9e-06 55.8 104 35.6
C04p14200 Brassica napus HOM05D002924 ORTHO05D003122 2.9e-06 55.8 104 35.6
C05p28990 Brassica napus HOM05D002924 ORTHO05D003122 2.9e-06 55.8 116 38.8
BolC4t23009H Brassica oleracea HOM05D002924 ORTHO05D003122 2.9e-06 55.8 104 35.6
BraA05t20050Z Brassica rapa HOM05D002924 ORTHO05D003122 2.9e-06 55.8 104 35.6
Eucgr.E02416 Eucalyptus grandis HOM05D002924 ORTHO05D003122 2.9e-06 55.8 85 44.7
Manes.17G071600 Manihot esculenta HOM05D002924 ORTHO05D003122 2.9e-06 55.8 97 41.2
TWI53G0343 Tripterygium wilfordii HOM05D002924 ORTHO05D003122 2.9e-06 55.8 81 43.2
GSVIVG01021516001 Vitis vinifera HOM05D002924 ORTHO05D003122 2.9e-06 55.8 76 46.1
ClCG03G006750 Citrullus lanatus HOM05D002924 ORTHO05D003122 3.8e-06 55.5 98 40.8
HanXRQChr04g0114381 Helianthus annuus HOM05D002924 ORTHO05D003122 3.8e-06 55.5 78 48.7
Psat1g194920 Pisum sativum HOM05D002924 ORTHO05D003122 3.8e-06 55.5 85 41.2
Solyc08g036620.4 Solanum lycopersicum HOM05D002924 ORTHO05D003122 3.8e-06 55.5 97 38.1
Aqoxy1G01686 Aquilegia oxysepala HOM05D002924 ORTHO05D003122 4.9e-06 55.1 116 33.6
BraA09t39160Z Brassica rapa HOM05D002924 ORTHO05D003122 4.9e-06 55.1 120 39.2
Dinv32237 Davidia involucrata HOM05D002924 ORTHO05D003122 4.9e-06 55.1 75 48.0
Eucgr.D00289 Eucalyptus grandis HOM05D002924 ORTHO05D003122 4.9e-06 55.1 90 44.4
FAN21G3281 Fragaria x ananassa HOM05D002924 ORTHO05D003122 4.9e-06 55.1 97 34.0
MD05G1282000 Malus domestica HOM05D002924 ORTHO05D003122 4.9e-06 55.1 90 38.9
MD05G1282100 Malus domestica HOM05D002924 ORTHO05D003122 4.9e-06 55.1 108 39.8
Potri.006G023301 Populus trichocarpa HOM05D002924 ORTHO05D003122 4.9e-06 55.1 117 37.6
Sed0024828 Sechium edule HOM05D002924 ORTHO05D003122 4.9e-06 55.1 109 35.8
EL10Ac8g19657 Beta vulgaris HOM05D002924 ORTHO05D003122 6.4e-06 54.7 82 41.5
Glyma.05G141200 Glycine max HOM05D002924 ORTHO05D003122 6.4e-06 54.7 101 37.6
Lj6g0009882 Lotus japonicus HOM05D002924 ORTHO05D003122 6.4e-06 54.7 88 44.3
Psat1g195000 Pisum sativum HOM05D002924 ORTHO05D003122 6.4e-06 54.7 85 41.2
PGR083G2757 Punica granatum HOM05D002924 ORTHO05D003122 6.4e-06 54.7 82 47.6
FAN16G2964 Fragaria x ananassa HOM05D002924 ORTHO05D003122 8.4e-06 54.3 104 31.7
HPP92_008419 Vanilla planifolia HOM05D018900 ORTHO05D003122 8.4e-06 54.3 89 42.7


User provided reference genes

Program Settings