Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_009218 Vanilla planifolia HOM05D004337 ORTHO05D005422 0.0e+00 1202.2 590 100.0
CiPaw.15G184900 Carya illinoinensis HOM05D004337 ORTHO05D005422 1.7e-276 955.7 584 79.6
Cfa020919 Carpinus fangiana HOM05D004337 ORTHO05D005422 5.1e-273 944.1 594 77.3
MBI06_g32147_MAGBIO Magnolia biondii HOM05D004337 ORTHO05D005422 5.1e-273 944.1 578 79.6
Potri.T045800 Populus trichocarpa HOM05D004337 ORTHO05D005422 2.5e-272 941.8 570 79.3
Potri.018G137500 Populus trichocarpa HOM05D004337 ORTHO05D005422 7.4e-272 940.3 570 79.1
TAR376G0777 Trochodendron aralioides HOM05D004337 ORTHO05D005422 9.6e-272 939.9 596 77.0
Sabra04G0083600 Salix brachista HOM05D004337 ORTHO05D005422 1.3e-271 939.5 578 78.5
Prupe.4G286100 Prunus persica HOM05D004337 ORTHO05D005422 1.6e-271 939.1 593 76.7
MELO3C003282.2 Cucumis melo HOM05D004337 ORTHO05D005422 2.1e-271 938.7 576 79.0
Potri.004G134500 Populus trichocarpa HOM05D004337 ORTHO05D005422 8.1e-271 936.8 570 78.6
Dinv09624 Davidia involucrata HOM05D004337 ORTHO05D005422 1.1e-270 936.4 571 79.3
Gohir.A12G002300 Gossypium hirsutum HOM05D004337 ORTHO05D005422 3.1e-270 934.9 571 78.3
Gohir.D04G040600 Gossypium hirsutum HOM05D004337 ORTHO05D005422 5.3e-270 934.1 571 77.8
Gorai.012G045800 Gossypium raimondii HOM05D004337 ORTHO05D005422 5.3e-270 934.1 571 77.8
Gohir.A05G375100 Gossypium hirsutum HOM05D004337 ORTHO05D005422 3.4e-269 931.4 571 77.6
CsaV3_4G030000 Cucumis sativus L. HOM05D004337 ORTHO05D005422 9.9e-269 929.9 571 78.6
Manes.12G081000 Manihot esculenta HOM05D004337 ORTHO05D005422 9.9e-269 929.9 591 75.6
Thecc.01G146600 Theobroma cacao HOM05D004337 ORTHO05D005422 9.9e-269 929.9 571 78.6
Gorai.008G001400 Gossypium raimondii HOM05D004337 ORTHO05D005422 1.7e-268 929.1 578 77.0
Actinidia36582 Actinidia chinensis HOM05D004337 ORTHO05D005422 4.9e-268 927.5 578 77.7
GSVIVG01000243001 Vitis vinifera HOM05D004337 ORTHO05D005422 4.9e-268 927.5 600 75.8
QL10p037473 Quercus lobata HOM05D004337 ORTHO05D005422 1.1e-267 926.4 585 76.4
Lj1g0000957 Lotus japonicus HOM05D004337 ORTHO05D005422 2.4e-267 925.2 596 75.7
PGR119G0424 Punica granatum HOM05D004337 ORTHO05D005422 5.5e-267 924.1 573 78.4
Aqoxy5G01850 Aquilegia oxysepala HOM05D004337 ORTHO05D005422 1.2e-266 922.9 590 76.9
MD15G1140200 Malus domestica HOM05D004337 ORTHO05D005422 2.1e-266 922.2 569 77.3
VMungo1309G0234 Vigna mungo HOM05D004337 ORTHO05D005422 3.0e-265 918.3 594 74.6
Hma1.2p1_0296F.1_g116900 Hydrangea macrophylla HOM05D004337 ORTHO05D005422 6.7e-265 917.1 592 76.0
Ciclev10025224m.g Citrus clementina HOM05D004337 ORTHO05D005422 1.5e-264 916.0 571 77.9
Atru.chr3.1466 Acer truncatum HOM05D004337 ORTHO05D005422 1.9e-264 915.6 579 76.7
Actinidia19947 Actinidia chinensis HOM05D004337 ORTHO05D005422 3.3e-264 914.8 570 77.4
TPR.G7800 Trifolium pratense HOM05D004337 ORTHO05D005422 5.6e-264 914.1 597 74.9
MSTRG.23236 Avicennia marina HOM05D004337 ORTHO05D005422 7.4e-264 913.7 575 76.9
TWI75G1462 Tripterygium wilfordii HOM05D004337 ORTHO05D005422 7.4e-264 913.7 573 76.6
arahy.Tifrunner.gnm1.ann1.X1BSDH Arachis hypogaea HOM05D004337 ORTHO05D005422 1.6e-263 912.5 566 77.0
Sed0025757 Sechium edule HOM05D004337 ORTHO05D005422 2.1e-263 912.1 566 77.0
Glyma.04G203800 Glycine max HOM05D004337 ORTHO05D005422 3.7e-263 911.4 593 74.2
Eucgr.I00018 Eucalyptus grandis HOM05D004337 ORTHO05D005422 4.8e-263 911.0 571 76.4
CANSAT54G2432 Cannabis sativa HOM05D004337 ORTHO05D005422 1.1e-262 909.8 578 74.9
EL10Ac4g09743 Beta vulgaris HOM05D004337 ORTHO05D005422 2.4e-262 908.7 582 75.6
CAN.G1156.26 Capsicum annuum HOM05D004337 ORTHO05D005422 4.0e-262 907.9 571 76.9
RcHm_v2.0_Chr3g0484771 Rosa chinensis HOM05D004337 ORTHO05D005422 6.9e-262 907.1 568 76.9
THA.LOC104818397 Tarenaya hassleriana HOM05D004337 ORTHO05D005422 2.0e-261 905.6 571 76.7
Medtr3g098210 Medicago truncatula HOM05D004337 ORTHO05D005422 3.4e-261 904.8 597 74.2
Peaxi162Scf00353g00735 Petunia axillaris HOM05D004337 ORTHO05D005422 3.4e-261 904.8 575 76.0
Phvul.009G159800 Phaseolus vulgaris HOM05D004337 ORTHO05D005422 3.4e-261 904.8 595 74.3
Sc16g0009860 Simmondsia chinensis HOM05D004337 ORTHO05D005422 5.8e-261 904.0 550 78.2
THA.LOC104819366 Tarenaya hassleriana HOM05D004337 ORTHO05D005422 1.0e-260 903.3 574 75.3
ATR1089G072 Amborella trichopoda HOM05D004337 ORTHO05D005422 2.2e-260 902.1 572 76.7
Psat5g057120 Pisum sativum HOM05D004337 ORTHO05D005422 2.2e-260 902.1 595 74.5
Solyc05g056350.3 Solanum lycopersicum HOM05D004337 ORTHO05D005422 2.2e-260 902.1 586 75.4
Sopen05g034740 Solanum pennellii HOM05D004337 ORTHO05D005422 2.2e-260 902.1 586 75.3
Zm00001eb422980 Zea mays HOM05D004337 ORTHO05D005422 2.5e-259 898.7 601 73.5
Lalb_Chr07g0183961 Lupinus albus HOM05D004337 ORTHO05D005422 7.1e-259 897.1 598 74.2
Hund21761 Selenicereus undatus HOM05D004337 ORTHO05D005422 7.1e-259 897.1 575 75.7
Glyma.06G161400 Glycine max HOM05D004337 ORTHO05D005422 9.3e-259 896.7 594 73.4
FvH4_1g25770 Fragaria vesca HOM05D004337 ORTHO05D005422 2.1e-258 895.6 594 73.2
Migut.H02542 Erythranthe guttata HOM05D004337 ORTHO05D005422 2.7e-258 895.2 580 74.3
Zm00001eb082160 Zea mays HOM05D004337 ORTHO05D005422 2.7e-258 895.2 603 73.8
Lalb_Chr12g0202711 Lupinus albus HOM05D004337 ORTHO05D005422 6.0e-258 894.0 598 73.9
COL.COLO4_33529 Corchorus olitorius HOM05D004337 ORTHO05D005422 7.9e-258 893.6 565 75.6
PGSC0003DMG400023451 Solanum tuberosum HOM05D004337 ORTHO05D005422 1.0e-257 893.3 593 74.0
Lsat_1_v5_gn_2_40441 Lactuca sativa HOM05D004337 ORTHO05D005422 3.0e-257 891.7 576 75.7
Oeu054207.1 Olea europaea HOM05D004337 ORTHO05D005422 3.9e-257 891.3 590 73.7
Oeu046358.1 Olea europaea HOM05D004337 ORTHO05D005422 1.1e-256 889.8 592 73.8
Nitab4.5_0000496g0240 Nicotiana tabacum HOM05D004337 ORTHO05D005422 2.5e-256 888.6 547 77.3
FAN23G1824 Fragaria x ananassa HOM05D004337 ORTHO05D005422 3.3e-256 888.3 612 71.6
Thhalv10013045m.g Eutrema salsugineum HOM05D004337 ORTHO05D005422 4.3e-256 887.9 605 73.4
FAN28G1720 Fragaria x ananassa HOM05D004337 ORTHO05D005422 5.7e-256 887.5 612 71.4
Ca_17042_v3 Cicer arietinum L. HOM05D004337 ORTHO05D005422 9.6e-256 886.7 596 73.3
Os04g0441900 Oryza sativa ssp. japonica HOM05D004337 ORTHO05D005422 9.6e-256 886.7 592 73.0
FAN26G1467 Fragaria x ananassa HOM05D004337 ORTHO05D005422 1.3e-255 886.3 612 71.4
unitig_736.g22365 Utricularia gibba HOM05D004337 ORTHO05D005422 1.6e-255 885.9 583 75.6
FAN19G0301 Fragaria x ananassa HOM05D004337 ORTHO05D005422 2.8e-255 885.2 611 71.2
AUR62006971 Chenopodium quinoa HOM05D004337 ORTHO05D005422 4.8e-255 884.4 616 70.9
SGA_v2.0_scaffold12G06278 Striga asiatica HOM05D004337 ORTHO05D005422 6.3e-255 884.0 595 73.1
Lj4A821G42 Lonicera japonica HOM05D004337 ORTHO05D005422 1.1e-254 883.2 560 76.6
arahy.Tifrunner.gnm1.ann1.397MFZ Arachis hypogaea HOM05D004337 ORTHO05D005422 2.4e-254 882.1 606 71.9
AUR62000615 Chenopodium quinoa HOM05D004337 ORTHO05D005422 6.9e-254 880.6 616 70.5
Nitab4.5_0004764g0030 Nicotiana tabacum HOM05D004337 ORTHO05D005422 6.9e-254 880.6 557 77.2
Nn5g27210 Nelumbo nucifera HOM05D004337 ORTHO05D005422 1.5e-253 879.4 543 78.6
ECA238G0122 Erigeron canadensis HOM05D004337 ORTHO05D005422 3.4e-253 878.2 603 71.8
BraA10t44874Z Brassica rapa HOM05D004337 ORTHO05D005422 3.8e-252 874.8 607 72.2
BolC9t59595H Brassica oleracea HOM05D004337 ORTHO05D005422 2.5e-251 872.1 600 72.7
C09p68510 Brassica napus HOM05D004337 ORTHO05D005422 3.2e-251 871.7 599 72.6
Oeu017633.3 Olea europaea HOM05D004337 ORTHO05D005422 9.3e-251 870.2 566 74.4
AL6G19170 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 2.1e-250 869.0 601 71.4
BcaB08g37252 Brassica carinata HOM05D004337 ORTHO05D005422 2.7e-250 868.6 608 71.9
CARHR204490 Cardamine hirsuta HOM05D004337 ORTHO05D005422 4.6e-250 867.8 607 71.3
PSO210G2848 Papaver somniferum HOM05D004337 ORTHO05D005422 6.1e-250 867.5 591 71.4
Thhalv10003872m.g Eutrema salsugineum HOM05D004337 ORTHO05D005422 1.0e-249 866.7 596 70.8
A10p28250 Brassica napus HOM05D004337 ORTHO05D005422 1.3e-249 866.3 579 73.6
PSO761G0180 Papaver somniferum HOM05D004337 ORTHO05D005422 1.3e-249 866.3 589 71.3
Carub.0006s0742 Capsella rubella HOM05D004337 ORTHO05D005422 3.0e-249 865.1 602 70.9
Rhsim10G0124700 Rhododendron simsii HOM05D004337 ORTHO05D005422 1.5e-248 862.8 701 64.2
HanXRQChr10g0285831 Helianthus annuus HOM05D004337 ORTHO05D005422 2.5e-248 862.1 543 76.6
Aa31LG11G2980 Aethionema arabicum HOM05D004337 ORTHO05D005422 3.3e-248 861.7 596 70.8
Aa31LG3G18040 Aethionema arabicum HOM05D004337 ORTHO05D005422 7.4e-248 860.5 576 72.9
AL6G34865 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 2.2e-247 859.0 601 70.7
AT5G23575 Arabidopsis thaliana HOM05D004337 ORTHO05D005422 2.8e-247 858.6 601 70.5
Carub.0006s2135 Capsella rubella HOM05D004337 ORTHO05D005422 4.8e-247 857.8 577 71.4
BraA09t36334Z Brassica rapa HOM05D004337 ORTHO05D005422 3.1e-246 855.1 600 70.2
SGA_v2.0_scaffold51G18842 Striga asiatica HOM05D004337 ORTHO05D005422 3.1e-246 855.1 575 73.7
BcaB04g19858 Brassica carinata HOM05D004337 ORTHO05D005422 6.9e-246 854.0 602 69.9
A09p06870 Brassica napus HOM05D004337 ORTHO05D005422 2.0e-245 852.4 603 69.5
A06p34530 Brassica napus HOM05D004337 ORTHO05D005422 3.4e-245 851.7 575 71.3
BraA06t26382Z Brassica rapa HOM05D004337 ORTHO05D005422 1.3e-244 849.7 575 71.1
Sp2g23620 Schrenkiella parvula HOM05D004337 ORTHO05D005422 5.0e-244 847.8 575 71.1
CARHR189960 Cardamine hirsuta HOM05D004337 ORTHO05D005422 1.1e-243 846.7 602 70.1
C09p07600 Brassica napus HOM05D004337 ORTHO05D005422 1.9e-243 845.9 577 70.4
BcaC04g23504 Brassica carinata HOM05D004337 ORTHO05D005422 3.2e-243 845.1 575 70.4
BolC9t53677H Brassica oleracea HOM05D004337 ORTHO05D005422 3.2e-243 845.1 575 70.4
Dinv10851 Davidia involucrata HOM05D004337 ORTHO05D005422 2.7e-242 842.0 527 77.6
C07p43970 Brassica napus HOM05D004337 ORTHO05D005422 3.6e-242 841.6 605 68.8
BolC7t44925H Brassica oleracea HOM05D004337 ORTHO05D005422 6.1e-242 840.9 575 70.6
DCAR_009619 Daucus carota HOM05D004337 ORTHO05D005422 3.0e-241 838.6 615 68.8
Mapoly0020s0073 Marchantia polymorpha HOM05D004337 ORTHO05D005422 5.5e-235 817.8 565 68.8
Peaxi162Scf00651g00114 Petunia axillaris HOM05D004337 ORTHO05D005422 3.6e-234 815.1 598 68.1
Sp6g34400 Schrenkiella parvula HOM05D004337 ORTHO05D005422 1.1e-232 810.1 599 68.1
AT5G08500 Arabidopsis thaliana HOM05D004337 ORTHO05D005422 2.8e-231 805.4 527 73.6
SMO116G0204 Selaginella moellendorffii HOM05D004337 ORTHO05D005422 1.6e-229 799.7 547 68.9
CSS0021638 Camellia sinensis var. sinensis HOM05D004337 ORTHO05D005422 1.5e-227 793.1 497 77.7
vmacro12739 Vaccinium macrocarpon HOM05D004337 ORTHO05D005422 8.2e-223 777.3 929 48.9
AL6G18970 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 2.0e-213 746.1 895 47.6
Pp3c5_10010 Physcomitrium patens HOM05D004337 ORTHO05D005422 2.8e-207 725.7 587 61.2
Gohir.D12G002000 Gossypium hirsutum HOM05D004337 ORTHO05D005422 1.7e-204 716.5 571 63.2
Duzib264G1201 Durio zibethinus HOM05D004337 ORTHO05D005422 2.1e-202 709.5 570 63.0
Ah.06g188230 Amaranthus hybridus HOM05D004337 ORTHO05D005422 1.8e-201 706.4 533 68.5
Cc00_g00820 Coffea canephora HOM05D004337 ORTHO05D005422 1.0e-196 690.6 407 81.3
CBR_g44530 Chara braunii HOM05D004337 ORTHO05D005422 1.3e-191 673.7 559 58.0
CDE05G2996 Ceratophyllum demersum HOM05D004337 ORTHO05D005422 7.8e-189 664.5 452 71.2
Haze_19353 Corylus avellana HOM05D004337 ORTHO05D005422 1.6e-170 603.6 346 85.3
AL6G18990 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 8.4e-159 564.7 462 63.9
SHI38349 Sapria himalayana HOM05D004337 ORTHO05D005422 3.5e-157 559.3 425 68.7
Cre09.g397900 Chlamydomonas reinhardtii HOM05D004337 ORTHO05D005422 3.7e-146 522.7 583 46.3
ClCG04G002690 Citrullus lanatus HOM05D004337 ORTHO05D005422 1.2e-144 517.7 313 82.1
AL6G19200 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 1.2e-128 464.5 451 58.1
MCO10G243 Micromonas commoda HOM05D004337 ORTHO05D005422 1.2e-117 427.9 327 61.5
Haze_27034 Corylus avellana HOM05D004337 ORTHO05D005422 1.0e-100 371.7 413 44.6
Cfa024513 Carpinus fangiana HOM05D004337 ORTHO05D005422 3.5e-96 356.7 544 37.5
PRCOL_00006172 Prasinoderma coloniale HOM05D004337 ORTHO05D005422 2.3e-95 354.0 496 40.3
Cpa.g.sc3593.1 Carica papaya HOM05D004337 ORTHO05D005422 1.8e-89 334.3 188 86.2
Cpa.g.sc138.38 Carica papaya HOM05D004337 ORTHO05D005422 3.0e-84 317.0 233 66.5
Haze_19352 Corylus avellana HOM05D004337 ORTHO05D005422 5.6e-78 296.2 224 65.2
HPP92_009290 Vanilla planifolia HOM05D004337 ORTHO05D005422 1.9e-73 281.2 489 41.5
MCO07G426 Micromonas commoda HOM05D004337 ORTHO05D005422 4.1e-73 280.0 392 39.3
AL6G19020 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 4.7e-69 266.5 218 59.6
PRCOL_00005640 Prasinoderma coloniale HOM05D004337 ORTHO05D005422 1.4e-68 265.0 367 36.8
SalBow8G1257 Salvia bowleyana HOM05D004337 ORTHO05D005422 8.9e-68 262.3 213 63.8
SalBow8G3722 Salvia bowleyana HOM05D004337 ORTHO05D005422 8.9e-68 262.3 213 63.8
ClCG04G002680 Citrullus lanatus HOM05D004337 ORTHO05D005422 1.1e-60 238.8 152 73.0
Cc00_g00810 Coffea canephora HOM05D004337 ORTHO05D005422 1.4e-60 238.4 161 70.8
CDE05G3583 Ceratophyllum demersum HOM05D004337 ORTHO05D005422 3.4e-43 180.6 115 79.1
Hma1.2p1_0641F.1_g194250 Hydrangea macrophylla HOM05D004337 ORTHO05D005422 1.1e-30 139.0 72 90.3
Psat3g077400 Pisum sativum HOM05D004337 ORTHO05D005422 7.6e-27 126.3 117 54.7
BcaC04g21668 Brassica carinata HOM05D004337 ORTHO05D021976 3.8e-26 124.0 150 49.3
C09p29160 Brassica napus HOM05D004337 ORTHO05D021976 3.8e-26 124.0 150 49.3
Hma1.2p1_0641F.1_g194230 Hydrangea macrophylla HOM05D004337 ORTHO05D005422 4.6e-16 90.5 110 50.0
SEGI_12766 Sequoiadendron giganteum HOM05D004337 ORTHO05D005422 6.7e-15 86.7 44 81.8
CDE05G0837 Ceratophyllum demersum HOM05D004337 ORTHO05D043897 4.1e-12 77.4 71 59.2
AUR62044487 Chenopodium quinoa HOM05D004337 ORTHO05D021976 5.3e-12 77.0 49 63.3
AUR62044516 Chenopodium quinoa HOM05D004337 ORTHO05D021976 5.3e-12 77.0 49 63.3
SHI11402 Sapria himalayana HOM05D000039 ORTHO05D006865 1.5e-11 75.5 44 70.5
AUR62038356 Chenopodium quinoa HOM05D001477 ORTHO05D021976 2.9e-10 71.2 43 67.4
Pp3c6_20370 Physcomitrium patens HOM05D004337 ORTHO05D043897 6.1e-08 63.5 57 52.6


User provided reference genes

Program Settings