Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_009217 Vanilla planifolia HOM05D004360 ORTHO05D005195 1.7e-97 359.4 187 100.0
Potri.003G048300 Populus trichocarpa HOM05D004360 ORTHO05D005195 1.2e-63 246.9 184 69.0
TAR628G1251 Trochodendron aralioides HOM05D004360 ORTHO05D005195 3.6e-63 245.4 181 68.0
Nn5g27232 Nelumbo nucifera HOM05D004360 ORTHO05D005195 8.8e-62 240.7 174 70.1
Manes.02G202700 Manihot esculenta HOM05D004360 ORTHO05D005195 2.0e-61 239.6 184 67.4
Potri.013G095200 Populus trichocarpa HOM05D004360 ORTHO05D005195 2.0e-61 239.6 178 67.4
GSVIVG01037160001 Vitis vinifera HOM05D004360 ORTHO05D005195 1.3e-60 236.9 180 67.2
Ciclev10022474m.g Citrus clementina HOM05D004360 ORTHO05D005195 1.4e-59 233.4 174 66.7
Manes.18G109100 Manihot esculenta HOM05D004360 ORTHO05D005195 1.4e-59 233.4 184 65.8
CsaV3_2G033320 Cucumis sativus L. HOM05D004360 ORTHO05D005195 1.8e-59 233.0 175 68.0
TWI12G0674 Tripterygium wilfordii HOM05D004360 ORTHO05D005195 1.8e-59 233.0 185 64.9
QL09p001278 Quercus lobata HOM05D004360 ORTHO05D005195 4.1e-59 231.9 173 65.9
Hma1.2p1_0016F.1_g010960 Hydrangea macrophylla HOM05D004360 ORTHO05D005195 5.3e-59 231.5 178 66.9
Psat5g232320 Pisum sativum HOM05D004360 ORTHO05D005195 5.3e-59 231.5 173 65.3
MELO3C008103.2 Cucumis melo HOM05D004360 ORTHO05D005195 7.0e-59 231.1 175 66.9
Duzib116G0053 Durio zibethinus HOM05D004360 ORTHO05D005195 7.0e-59 231.1 174 69.0
CDE08G1539 Ceratophyllum demersum HOM05D004360 ORTHO05D005195 9.1e-59 230.7 184 64.7
Glyma.04G110500 Glycine max HOM05D004360 ORTHO05D005195 9.1e-59 230.7 177 67.2
CANSAT56G1596 Cannabis sativa HOM05D004360 ORTHO05D005195 1.2e-58 230.3 175 66.9
PGR083G1110 Punica granatum HOM05D004360 ORTHO05D005195 1.2e-58 230.3 178 64.6
Eucgr.F04085 Eucalyptus grandis HOM05D004360 ORTHO05D005195 1.6e-58 229.9 178 65.7
Glyma.06G323900 Glycine max HOM05D004360 ORTHO05D005195 1.6e-58 229.9 174 68.4
MBI03_g07140_MAGBIO Magnolia biondii HOM05D004360 ORTHO05D005195 2.0e-58 229.6 178 65.2
Phvul.005G002300 Phaseolus vulgaris HOM05D004360 ORTHO05D005195 2.0e-58 229.6 179 65.9
HPP92_001197 Vanilla planifolia HOM05D004360 ORTHO05D005195 2.6e-58 229.2 178 66.3
Carub.0001s3168 Capsella rubella HOM05D004360 ORTHO05D005195 7.7e-58 227.6 157 72.6
ClCG11G008280 Citrullus lanatus HOM05D004360 ORTHO05D005195 1.0e-57 227.3 171 67.3
COL.COLO4_25070 Corchorus olitorius HOM05D004360 ORTHO05D005195 1.3e-57 226.9 177 66.7
Lj3g0027106 Lotus japonicus HOM05D004360 ORTHO05D005195 1.3e-57 226.9 185 62.7
Thecc.08G168700 Theobroma cacao HOM05D004360 ORTHO05D005195 2.2e-57 226.1 172 68.0
arahy.Tifrunner.gnm1.ann1.4Y3JNF Arachis hypogaea HOM05D004360 ORTHO05D005195 2.9e-57 225.7 187 63.6
Oeu020627.1 Olea europaea HOM05D004360 ORTHO05D005195 2.9e-57 225.7 179 64.2
Prupe.8G003400 Prunus persica HOM05D004360 ORTHO05D005195 2.9e-57 225.7 162 68.5
ATR1089G020 Amborella trichopoda HOM05D004360 ORTHO05D005195 3.8e-57 225.3 184 63.0
TPR.G25525 Trifolium pratense HOM05D004360 ORTHO05D005195 3.8e-57 225.3 184 62.5
EL10Ac1g01286 Beta vulgaris HOM05D004360 ORTHO05D005195 5.0e-57 224.9 178 64.6
Oeu028624.1 Olea europaea HOM05D004360 ORTHO05D005195 8.5e-57 224.2 198 60.1
Medtr3g006190 Medicago truncatula HOM05D004360 ORTHO05D005195 1.5e-56 223.4 184 62.0
Gohir.A05G248500 Gossypium hirsutum HOM05D004360 ORTHO05D005195 2.5e-56 222.6 177 64.4
VMungo1080G0197 Vigna mungo HOM05D004360 ORTHO05D005195 2.5e-56 222.6 174 67.2
Cc10_g16090 Coffea canephora HOM05D004360 ORTHO05D005195 3.2e-56 222.2 181 63.0
AL1G47880 Arabidopsis lyrata HOM05D004360 ORTHO05D005195 4.2e-56 221.9 161 69.6
Lalb_Chr18g0048451 Lupinus albus HOM05D004360 ORTHO05D005195 4.2e-56 221.9 173 65.9
CSS0027083 Camellia sinensis var. sinensis HOM05D004360 ORTHO05D005195 5.5e-56 221.5 180 64.4
Gohir.D05G250900 Gossypium hirsutum HOM05D004360 ORTHO05D005195 7.2e-56 221.1 177 63.8
Gorai.009G262300 Gossypium raimondii HOM05D004360 ORTHO05D005195 7.2e-56 221.1 177 63.8
DCAR_014061 Daucus carota HOM05D004360 ORTHO05D005195 9.4e-56 220.7 178 61.8
Hund16918 Selenicereus undatus HOM05D004360 ORTHO05D005195 9.4e-56 220.7 184 60.9
SGA_v2.0_scaffold118G32638 Striga asiatica HOM05D004360 ORTHO05D005195 1.6e-55 219.9 167 66.5
Actinidia01542 Actinidia chinensis HOM05D004360 ORTHO05D005195 2.1e-55 219.5 179 64.2
Sed0011254 Sechium edule HOM05D004360 ORTHO05D005195 2.7e-55 219.2 173 63.0
AUR62038546 Chenopodium quinoa HOM05D004360 ORTHO05D005195 3.6e-55 218.8 161 69.6
MD05G1006100 Malus domestica HOM05D004360 ORTHO05D005195 3.6e-55 218.8 175 64.0
AUR62013395 Chenopodium quinoa HOM05D004360 ORTHO05D005195 4.7e-55 218.4 161 69.6
PSO761G0584 Papaver somniferum HOM05D004360 ORTHO05D005195 6.1e-55 218.0 176 64.2
THA.LOC104806751 Tarenaya hassleriana HOM05D004360 ORTHO05D005195 1.0e-54 217.2 181 63.0
Aqoxy5G01853 Aquilegia oxysepala HOM05D004360 ORTHO05D005195 1.4e-54 216.9 178 61.2
BcaC03g16418 Brassica carinata HOM05D004360 ORTHO05D005195 1.8e-54 216.5 156 68.6
C02p42460 Brassica napus HOM05D004360 ORTHO05D005195 1.8e-54 216.5 156 68.6
PSO210G5265 Papaver somniferum HOM05D004360 ORTHO05D005195 1.8e-54 216.5 158 68.4
Peaxi162Scf00818g00320 Petunia axillaris HOM05D004360 ORTHO05D005195 1.8e-54 216.5 161 67.1
Nitab4.5_0007335g0050 Nicotiana tabacum HOM05D004360 ORTHO05D005195 2.3e-54 216.1 177 65.0
AUR62038559 Chenopodium quinoa HOM05D004360 ORTHO05D005195 3.0e-54 215.7 161 68.9
BcaC08g43849 Brassica carinata HOM05D004360 ORTHO05D005195 5.2e-54 214.9 181 61.3
C06p12320 Brassica napus HOM05D004360 ORTHO05D005195 5.2e-54 214.9 181 61.3
BolC6t36383H Brassica oleracea HOM05D004360 ORTHO05D005195 5.2e-54 214.9 181 61.3
RcHm_v2.0_Chr6g0249591 Rosa chinensis HOM05D004360 ORTHO05D005195 5.2e-54 214.9 172 64.5
BcaB05g23914 Brassica carinata HOM05D004360 ORTHO05D005195 6.8e-54 214.5 156 67.9
A09p32780 Brassica napus HOM05D004360 ORTHO05D005195 6.8e-54 214.5 179 62.0
BraA09t38813Z Brassica rapa HOM05D004360 ORTHO05D005195 6.8e-54 214.5 179 62.0
Thhalv10008879m.g Eutrema salsugineum HOM05D004360 ORTHO05D005195 6.8e-54 214.5 181 60.8
Lj7A416T39 Lonicera japonica HOM05D004360 ORTHO05D005195 8.8e-54 214.2 162 65.4
MD10G1002100 Malus domestica HOM05D004360 ORTHO05D005195 8.8e-54 214.2 172 62.2
Aa31LG6G7960 Aethionema arabicum HOM05D004360 ORTHO05D005195 1.2e-53 213.8 189 60.8
FvH4_2g00310 Fragaria vesca HOM05D004360 ORTHO05D005195 1.2e-53 213.8 161 65.2
Sed0002471 Sechium edule HOM05D004360 ORTHO05D005195 2.6e-53 212.6 162 64.8
A02p26710 Brassica napus HOM05D004360 ORTHO05D005195 3.4e-53 212.2 156 67.3
BraA02t07674Z Brassica rapa HOM05D004360 ORTHO05D005195 3.4e-53 212.2 156 67.3
FAN20G2250 Fragaria x ananassa HOM05D004360 ORTHO05D005195 4.4e-53 211.8 161 64.0
PGSC0003DMG400033136 Solanum tuberosum HOM05D004360 ORTHO05D005195 7.5e-53 211.1 172 62.8
unitig_8.g4904 Utricularia gibba HOM05D004360 ORTHO05D005195 7.5e-53 211.1 175 61.7
Thhalv10029009m.g Eutrema salsugineum HOM05D004360 ORTHO05D005195 9.8e-53 210.7 158 65.8
Sp6g07270 Schrenkiella parvula HOM05D004360 ORTHO05D005195 9.8e-53 210.7 174 62.6
Carub.0006s2871 Capsella rubella HOM05D004360 ORTHO05D005195 1.3e-52 210.3 174 61.5
Gohir.D08G249500 Gossypium hirsutum HOM05D004360 ORTHO05D005195 1.7e-52 209.9 160 63.8
Gorai.004G266100 Gossypium raimondii HOM05D004360 ORTHO05D005195 1.7e-52 209.9 160 63.8
SEGI_09604 Sequoiadendron giganteum HOM05D004360 ORTHO05D005195 1.7e-52 209.9 185 58.4
Gohir.A08G229200 Gossypium hirsutum HOM05D004360 ORTHO05D005195 2.2e-52 209.5 160 63.1
Peaxi162Scf00078g00103 Petunia axillaris HOM05D004360 ORTHO05D005195 2.2e-52 209.5 152 69.7
BcaB07g32992 Brassica carinata HOM05D004360 ORTHO05D005195 2.8e-52 209.1 154 67.5
Sopen06g022920 Solanum pennellii HOM05D004360 ORTHO05D005195 3.7e-52 208.8 172 62.2
Atru.chr13.2581 Acer truncatum HOM05D004360 ORTHO05D005195 6.3e-52 208.0 174 60.3
Nitab4.5_0007657g0070 Nicotiana tabacum HOM05D004360 ORTHO05D005195 8.3e-52 207.6 168 64.3
MSTRG.1609 Avicennia marina HOM05D004360 ORTHO05D005195 1.1e-51 207.2 163 65.6
Sopen11g020480 Solanum pennellii HOM05D004360 ORTHO05D005195 1.1e-51 207.2 157 66.2
AL6G43950 Arabidopsis lyrata HOM05D004360 ORTHO05D005195 1.4e-51 206.8 158 65.2
Solyc06g064450.3 Solanum lycopersicum HOM05D004360 ORTHO05D005195 1.4e-51 206.8 172 62.2
TWI18G1157 Tripterygium wilfordii HOM05D004360 ORTHO05D005195 1.4e-51 206.8 169 62.7
AT4G10140 Arabidopsis thaliana HOM05D004360 ORTHO05D005195 1.8e-51 206.5 174 60.9
CARHR261230 Cardamine hirsuta HOM05D004360 ORTHO05D005195 2.4e-51 206.1 174 59.8
Os05g0105500 Oryza sativa ssp. japonica HOM05D004360 ORTHO05D005195 2.4e-51 206.1 159 62.9
Solyc11g045030.2 Solanum lycopersicum HOM05D004360 ORTHO05D005195 2.4e-51 206.1 157 65.6
CAN.G14.46 Capsicum annuum HOM05D004360 ORTHO05D005195 3.1e-51 205.7 152 67.1
PGSC0003DMG400006668 Solanum tuberosum HOM05D004360 ORTHO05D005195 3.1e-51 205.7 157 65.6
Actinidia29366 Actinidia chinensis HOM05D004360 ORTHO05D005195 4.1e-51 205.3 204 55.4
A09p28790 Brassica napus HOM05D004360 ORTHO05D005195 7.0e-51 204.5 158 65.8
arahy.Tifrunner.gnm1.ann1.19X5J5 Arachis hypogaea HOM05D004360 ORTHO05D005195 3.5e-50 202.2 164 66.5
CAN.G970.20 Capsicum annuum HOM05D004360 ORTHO05D005195 7.7e-50 201.1 151 66.9
C09p36560 Brassica napus HOM05D004360 ORTHO05D005195 1.3e-49 200.3 155 65.2
Lsat_1_v5_gn_1_24560 Lactuca sativa HOM05D004360 ORTHO05D005195 5.0e-49 198.4 174 60.3
HanXRQChr05g0150501 Helianthus annuus HOM05D004360 ORTHO05D005195 1.5e-48 196.8 175 59.4
ECA247G3060 Erigeron canadensis HOM05D004360 ORTHO05D005195 1.9e-48 196.4 167 61.7
Zm00001eb207120 Zea mays HOM05D004360 ORTHO05D005195 1.9e-48 196.4 159 61.0
Lsat_1_v5_gn_6_109600 Lactuca sativa HOM05D004360 ORTHO05D005195 3.2e-48 195.7 163 62.0
Lalb_Chr01g0008181 Lupinus albus HOM05D004360 ORTHO05D005195 3.2e-48 195.7 180 57.8
HanXRQChr12g0369241 Helianthus annuus HOM05D004360 ORTHO05D005195 9.4e-48 194.1 171 57.9
Zm00001eb289060 Zea mays HOM05D004360 ORTHO05D005195 9.4e-48 194.1 159 61.6
Aa31LG9G11860 Aethionema arabicum HOM05D004360 ORTHO05D005195 1.6e-47 193.4 204 52.5
Haze_14005 Corylus avellana HOM05D004360 ORTHO05D005195 2.1e-47 193.0 129 73.6
CiPaw.03G012600 Carya illinoinensis HOM05D004360 ORTHO05D005195 2.7e-47 192.6 130 70.0
CDE02G3351 Ceratophyllum demersum HOM05D004360 ORTHO05D005195 2.7e-47 192.6 159 62.9
Sabra13G0081200 Salix brachista HOM05D004360 ORTHO05D005195 4.7e-47 191.8 130 72.3
HanXRQChr08g0226271 Helianthus annuus HOM05D004360 ORTHO05D005195 1.0e-46 190.7 163 59.5
Nitab4.5_0000079g0160 Nicotiana tabacum HOM05D004360 ORTHO05D005195 1.8e-46 189.9 190 58.4
Psat7g229800 Pisum sativum HOM05D004360 ORTHO05D005195 2.3e-46 189.5 178 56.7
BraA09t38441Z Brassica rapa HOM05D004360 ORTHO05D005195 3.0e-46 189.1 187 55.6
BolC2t10286H Brassica oleracea HOM05D004360 ORTHO05D005195 6.8e-46 188.0 140 67.1
Rhsim12G0001800 Rhododendron simsii HOM05D004360 ORTHO05D005195 1.2e-45 187.2 220 48.6
BolC9t56489H Brassica oleracea HOM05D004360 ORTHO05D005195 5.7e-45 184.9 184 54.9
CARHR032930 Cardamine hirsuta HOM05D004360 ORTHO05D005195 5.7e-45 184.9 123 74.8
AT1G33490 Arabidopsis thaliana HOM05D004360 ORTHO05D005195 7.5e-45 184.5 130 71.5
Sc06g0000070 Simmondsia chinensis HOM05D004360 ORTHO05D005195 7.5e-45 184.5 130 67.7
Medtr4g030060 Medicago truncatula HOM05D004360 ORTHO05D005195 3.7e-44 182.2 178 52.8
BcaC04g21022 Brassica carinata HOM05D004360 ORTHO05D005195 4.9e-44 181.8 147 62.6
Sp1g28930 Schrenkiella parvula HOM05D004360 ORTHO05D002912 1.1e-43 180.6 130 69.2
Duzib116G0205 Durio zibethinus HOM05D004360 ORTHO05D005195 2.4e-43 179.5 132 71.2
Migut.C01399 Erythranthe guttata HOM05D004360 ORTHO05D005195 7.7e-42 174.5 124 67.7
AagrBONN_evm.TU.Sc2ySwM_368.413 Anthoceros agrestis HOM05D004360 ORTHO05D005195 4.3e-40 168.7 148 58.1
DCAR_003506 Daucus carota HOM05D005117 ORTHO05D005956 9.5e-40 167.5 124 64.5
SMO143G0101 Selaginella moellendorffii HOM05D004360 ORTHO05D005195 1.2e-39 167.2 154 51.3
SHI16862 Sapria himalayana HOM05D004360 ORTHO05D005195 1.0e-38 164.1 136 64.7
Ah.05g170480 Amaranthus hybridus HOM05D004360 ORTHO05D005195 5.2e-38 161.8 132 64.4
Mapoly0022s0158 Marchantia polymorpha HOM05D004360 ORTHO05D005195 1.5e-37 160.2 152 52.0
Pp3c23_11640 Physcomitrium patens HOM05D004360 ORTHO05D005195 7.5e-37 157.9 149 51.0
PSO210G7326 Papaver somniferum HOM05D004360 ORTHO05D005195 1.3e-36 157.1 119 66.4
BcaB01g01456 Brassica carinata HOM05D004360 ORTHO05D005195 4.9e-36 155.2 139 59.7
Dinv37400 Davidia involucrata HOM05D004360 ORTHO05D005195 6.4e-36 154.8 122 65.6
Pp3c17_19860 Physcomitrium patens HOM05D004360 ORTHO05D005195 3.2e-35 152.5 161 45.3
CBR_g61487 Chara braunii HOM05D004360 ORTHO05D005195 4.1e-35 152.1 164 46.3
TPR.G4421 Trifolium pratense HOM05D004360 ORTHO05D001407 1.9e-32 143.3 130 58.5
SEGI_01847 Sequoiadendron giganteum HOM05D004360 ORTHO05D005195 9.5e-32 141.0 154 46.1
SMO356G0006 Selaginella moellendorffii HOM05D004360 ORTHO05D005195 1.2e-31 140.6 162 43.2
unitig_578.g16114 Utricularia gibba HOM05D004360 ORTHO05D005195 1.2e-29 134.0 113 64.6
BcaB01g01455 Brassica carinata HOM05D004360 ORTHO05D005195 1.5e-29 133.7 88 73.9
TAR375G0667 Trochodendron aralioides HOM05D004360 ORTHO05D005195 3.3e-24 115.9 122 54.1
ECA246G3009 Erigeron canadensis HOM05D004360 ORTHO05D005195 9.8e-21 104.4 108 54.6
HanXRQChr09g0244511 Helianthus annuus HOM05D004360 ORTHO05D005195 6.4e-20 101.7 90 63.3
FAN24G1049 Fragaria x ananassa HOM05D004360 ORTHO05D005195 5.1e-17 92.0 140 39.3
HPP92_009291 Vanilla planifolia HOM05D004360 ORTHO05D431319 3.2e-11 72.8 48 81.2
Pp3c14_12450 Physcomitrium patens HOM05D004360 ORTHO05D005195 2.1e-10 70.1 78 41.0
Dinv02982 Davidia involucrata HOM05D004360 ORTHO05D005195 8.6e-09 64.7 46 71.7
Dinv17160 Davidia involucrata HOM05D004360 ORTHO05D005195 8.6e-09 64.7 46 71.7
Dinv08764 Davidia involucrata HOM05D004360 ORTHO05D005195 3.3e-08 62.8 46 69.6
Dinv04074 Davidia involucrata HOM05D004360 ORTHO05D005195 5.6e-08 62.0 47 68.1
TPR.G39583 Trifolium pratense HOM05D004360 ORTHO05D005195 1.2e-07 60.8 49 51.0
arahy.Tifrunner.gnm1.ann1.B7FYB2 Arachis hypogaea HOM05D001689 ORTHO05D001643 3.6e-07 59.3 44 65.9


User provided reference genes

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