Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_009087 Vanilla planifolia HOM05D008202 ORTHO05D010302 1.8e-50 202.2 99 100.0
Dinv42250 Davidia involucrata HOM05D008202 ORTHO05D010302 8.3e-11 70.5 96 42.7
MBI01_g10122_MAGBIO Magnolia biondii HOM05D003005 ORTHO05D004170 8.3e-11 70.5 79 41.8
Dinv36682 Davidia involucrata HOM05D008202 ORTHO05D010302 1.1e-10 70.1 64 50.0
Oeu018577.1 Olea europaea HOM05D008202 ORTHO05D010302 1.9e-10 69.3 93 40.9
Thecc.09G099700 Theobroma cacao HOM05D008202 ORTHO05D010302 2.4e-10 68.9 91 38.5
Ciclev10010342m.g Citrus clementina HOM05D008202 ORTHO05D010302 7.1e-10 67.4 54 53.7
Sc18g0001520 Simmondsia chinensis HOM05D008202 ORTHO05D010302 7.1e-10 67.4 96 43.8
CDE08G1102 Ceratophyllum demersum HOM05D008202 ORTHO05D010302 9.2e-10 67.0 97 42.3
Manes.03G026600 Manihot esculenta HOM05D008202 ORTHO05D010302 1.2e-09 66.6 67 49.3
Actinidia17520 Actinidia chinensis HOM05D008202 ORTHO05D010302 2.1e-09 65.9 54 53.7
Manes.04G125801 Manihot esculenta HOM05D008202 ORTHO05D010302 2.1e-09 65.9 67 49.3
Manes.13G078801 Manihot esculenta HOM05D008202 ORTHO05D010302 2.1e-09 65.9 67 49.3
Gohir.A06G067500 Gossypium hirsutum HOM05D008202 ORTHO05D010302 2.7e-09 65.5 74 40.5
GSVIVG01015295001 Vitis vinifera HOM05D008202 ORTHO05D010302 2.7e-09 65.5 54 51.9
Gorai.010G077500 Gossypium raimondii HOM05D008202 ORTHO05D010302 4.6e-09 64.7 65 46.2
Nn8g39054 Nelumbo nucifera HOM05D008202 ORTHO05D010302 4.6e-09 64.7 42 64.3
CSS0001567 Camellia sinensis var. sinensis HOM05D008202 ORTHO05D010302 7.8e-09 63.9 65 46.2
COL.COLO4_34733 Corchorus olitorius HOM05D008202 ORTHO05D010302 7.8e-09 63.9 54 48.1
HanXRQChr12g0358111 Helianthus annuus HOM05D008202 ORTHO05D010302 7.8e-09 63.9 56 55.4
Actinidia39781 Actinidia chinensis HOM05D008202 ORTHO05D010302 1.0e-08 63.5 54 51.9
Ciclev10027258m.g Citrus clementina HOM05D008202 ORTHO05D010302 1.0e-08 63.5 55 49.1
Cc06_g10540 Coffea canephora HOM05D008202 ORTHO05D010302 1.0e-08 63.5 71 46.5
TWI63G1052 Tripterygium wilfordii HOM05D008202 ORTHO05D010302 1.3e-08 63.2 92 34.8
vmacro10849 Vaccinium macrocarpon HOM05D008202 ORTHO05D010302 1.3e-08 63.2 59 47.5
Rhsim05G0039400 Rhododendron simsii HOM05D008202 ORTHO05D010302 1.7e-08 62.8 54 50.0
ATR0705G156 Amborella trichopoda HOM05D008202 ORTHO05D010302 2.3e-08 62.4 74 41.9
Haze_25829 Corylus avellana HOM05D008202 ORTHO05D010302 2.3e-08 62.4 54 51.9
FvH4_1g06280 Fragaria vesca HOM05D008202 ORTHO05D010302 3.0e-08 62.0 97 38.1
FAN19G1093 Fragaria x ananassa HOM05D008202 ORTHO05D010302 3.0e-08 62.0 97 38.1
CiPaw.04G155900 Carya illinoinensis HOM05D008202 ORTHO05D010302 3.9e-08 61.6 96 36.5
DCAR_028656 Daucus carota HOM05D008202 ORTHO05D010302 3.9e-08 61.6 96 36.5
Migut.K00545 Erythranthe guttata HOM05D008202 ORTHO05D010302 3.9e-08 61.6 104 39.4
Prupe.7G218700 Prunus persica HOM05D008202 ORTHO05D010302 5.1e-08 61.2 98 36.7
Atru.chr7.1471 Acer truncatum HOM05D008202 ORTHO05D010302 6.6e-08 60.8 42 59.5
MSTRG.19550 Avicennia marina HOM05D008202 ORTHO05D010302 6.6e-08 60.8 93 35.5
FAN23G0175 Fragaria x ananassa HOM05D008202 ORTHO05D010302 6.6e-08 60.8 97 37.1
Lalb_Chr14g0371911 Lupinus albus HOM05D008202 ORTHO05D010302 8.6e-08 60.5 55 52.7
Peaxi162Scf00720g00418 Petunia axillaris HOM05D008202 ORTHO05D010302 8.6e-08 60.5 61 47.5
Psat1g048280 Pisum sativum HOM05D008202 ORTHO05D010302 8.6e-08 60.5 97 35.1
Hma1.2p1_0386F.1_g141760 Hydrangea macrophylla HOM05D008202 ORTHO05D010302 1.1e-07 60.1 99 39.4
Lsat_1_v5_gn_8_98261 Lactuca sativa HOM05D008202 ORTHO05D010302 1.1e-07 60.1 46 58.7
Ah.14g083220 Amaranthus hybridus HOM05D008202 ORTHO05D010302 1.5e-07 59.7 96 35.4
EL10Ac8g18376 Beta vulgaris HOM05D008202 ORTHO05D010302 1.5e-07 59.7 96 37.5
Gohir.D06G066100 Gossypium hirsutum HOM05D008202 ORTHO05D010302 1.5e-07 59.7 65 46.2
Ah.14g082540 Amaranthus hybridus HOM05D008202 ORTHO05D010302 1.9e-07 59.3 67 40.3
CiPaw.04G157000 Carya illinoinensis HOM05D008202 ORTHO05D010302 1.9e-07 59.3 96 35.4
Solyc04g058130.3 Solanum lycopersicum HOM05D008202 ORTHO05D010302 3.3e-07 58.5 38 63.2
PGSC0003DMG400046448 Solanum tuberosum HOM05D001685 ORTHO05D006653 3.3e-07 58.5 38 63.2
SGA_v2.0_scaffold512G52633 Striga asiatica HOM05D008202 ORTHO05D010302 3.3e-07 58.5 93 32.3
AUR62021399 Chenopodium quinoa HOM05D008202 ORTHO05D010302 5.6e-07 57.8 96 37.5
FAN26G0167 Fragaria x ananassa HOM05D008202 ORTHO05D010302 5.6e-07 57.8 57 47.4
FAN26G3206 Fragaria x ananassa HOM05D008202 ORTHO05D010302 5.6e-07 57.8 57 47.4
ClCG11G002070 Citrullus lanatus HOM05D008202 ORTHO05D010302 9.5e-07 57.0 57 47.4
PSO210G1322 Papaver somniferum HOM05D061259 ORTHO05D010302 9.5e-07 57.0 37 62.2
AUR62010887 Chenopodium quinoa HOM05D008202 ORTHO05D010302 1.2e-06 56.6 96 36.5
MD02G1066600 Malus domestica HOM05D008202 ORTHO05D010302 2.8e-06 55.5 70 40.0
PSO210G2383 Papaver somniferum HOM05D061259 ORTHO05D010302 2.8e-06 55.5 37 59.5
RcHm_v2.0_Chr2g0091981 Rosa chinensis HOM05D008202 ORTHO05D010302 2.8e-06 55.5 44 54.5
Zm00001eb371180 Zea mays HOM05D008202 ORTHO05D010302 2.8e-06 55.5 44 54.5
Os01g0742766 Oryza sativa ssp. japonica HOM05D008202 ORTHO05D010302 3.6e-06 55.1 56 42.9
CsaV3_2G001850 Cucumis sativus L. HOM05D008202 ORTHO05D010302 4.7e-06 54.7 37 62.2
Medtr6g088800 Medicago truncatula HOM05D008202 ORTHO05D010302 4.7e-06 54.7 51 45.1


User provided reference genes

Program Settings