Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_009020 Vanilla planifolia HOM05D003848 ORTHO05D004616 2.1e-221 772.3 469 100.0
MBI07_g03188_MAGBIO Magnolia biondii HOM05D003848 ORTHO05D004616 5.1e-82 309.3 503 52.5
CiPaw.08G106300 Carya illinoinensis HOM05D003848 ORTHO05D004616 8.1e-80 302.0 487 51.3
Oeu041715.2 Olea europaea HOM05D003848 ORTHO05D004616 1.8e-79 300.8 487 56.1
CDE06G2067 Ceratophyllum demersum HOM05D003848 ORTHO05D004616 6.8e-79 298.9 525 47.6
VMungo0720G2447 Vigna mungo HOM05D003848 ORTHO05D004616 1.5e-78 297.7 473 55.0
Cfa003508 Carpinus fangiana HOM05D003848 ORTHO05D004616 4.4e-78 296.2 463 56.2
ATR0332G007 Amborella trichopoda HOM05D003848 ORTHO05D004616 2.2e-77 293.9 517 48.4
GSVIVG01001165001 Vitis vinifera HOM05D003848 ORTHO05D004616 2.2e-77 293.9 456 57.2
Ciclev10019827m.g Citrus clementina HOM05D003848 ORTHO05D004616 4.9e-77 292.7 167 90.4
Phvul.007G172800 Phaseolus vulgaris HOM05D003848 ORTHO05D004616 4.9e-77 292.7 469 57.6
Cfa006159 Carpinus fangiana HOM05D003848 ORTHO05D004616 1.1e-76 291.6 463 58.3
Potri.002G051500 Populus trichocarpa HOM05D003848 ORTHO05D004616 1.1e-76 291.6 494 55.3
COL.COLO4_09072 Corchorus olitorius HOM05D003848 ORTHO05D004616 1.9e-76 290.8 452 52.0
Hma1.2p1_0822F.1_g224390 Hydrangea macrophylla HOM05D003848 ORTHO05D004616 9.2e-76 288.5 471 52.0
Haze_16066 Corylus avellana HOM05D003848 ORTHO05D004616 1.2e-75 288.1 461 56.2
SHI27493 Sapria himalayana HOM05D004058 ORTHO05D001984 1.2e-75 288.1 160 91.2
Atru.chr5.1462 Acer truncatum HOM05D003848 ORTHO05D004616 1.6e-75 287.7 422 55.5
Nitab4.5_0005156g0010 Nicotiana tabacum HOM05D003848 ORTHO05D004616 6.0e-75 285.8 433 54.5
TAR369G1095 Trochodendron aralioides HOM05D003848 ORTHO05D004616 7.8e-75 285.4 524 51.3
Gohir.D12G004200 Gossypium hirsutum HOM05D003848 ORTHO05D004616 1.7e-74 284.3 159 91.8
Gorai.008G004000 Gossypium raimondii HOM05D003848 ORTHO05D004616 1.7e-74 284.3 159 91.8
Nn1g02285 Nelumbo nucifera HOM05D003848 ORTHO05D004616 3.0e-74 283.5 479 50.5
TPR.G28157 Trifolium pratense HOM05D003848 ORTHO05D004616 3.0e-74 283.5 168 87.5
THA.LOC104801238 Tarenaya hassleriana HOM05D003848 ORTHO05D004616 3.9e-74 283.1 167 87.4
ATR0824G270 Amborella trichopoda HOM05D003848 ORTHO05D004616 6.6e-74 282.3 551 45.0
Aqoxy2G03377 Aquilegia oxysepala HOM05D003848 ORTHO05D004616 6.6e-74 282.3 525 51.2
Cpa.g.sc52.49 Carica papaya HOM05D003848 ORTHO05D004616 8.6e-74 282.0 522 53.8
MD11G1283600 Malus domestica HOM05D003848 ORTHO05D004616 1.1e-73 281.6 188 78.2
PGR119G0967 Punica granatum HOM05D003848 ORTHO05D004616 1.1e-73 281.6 168 86.3
Haze_04691 Corylus avellana HOM05D003848 ORTHO05D004616 1.5e-73 281.2 464 55.6
THA.LOC104825995 Tarenaya hassleriana HOM05D003848 ORTHO05D004616 1.5e-73 281.2 165 87.3
Glyma.10G027400 Glycine max HOM05D003848 ORTHO05D004616 2.5e-73 280.4 467 56.1
Lj5g0005692 Lotus japonicus HOM05D003848 ORTHO05D004616 2.5e-73 280.4 498 53.2
Potri.005G210900 Populus trichocarpa HOM05D003848 ORTHO05D004616 3.3e-73 280.0 407 59.2
arahy.Tifrunner.gnm1.ann1.ARWK2P Arachis hypogaea HOM05D003848 ORTHO05D004616 4.3e-73 279.6 504 54.0
Ca_09749_v3 Cicer arietinum L. HOM05D003848 ORTHO05D004616 4.3e-73 279.6 166 86.1
Dinv32920 Davidia involucrata HOM05D003848 ORTHO05D004616 4.3e-73 279.6 425 51.1
Sopen11g029330 Solanum pennellii HOM05D003848 ORTHO05D004616 4.3e-73 279.6 466 52.6
unitig_0.g1040 Utricularia gibba HOM05D003848 ORTHO05D004616 4.3e-73 279.6 418 53.6
vmacro18863 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 5.6e-73 279.3 184 79.3
Sabra05G0161100 Salix brachista HOM05D003848 ORTHO05D004616 1.2e-72 278.1 422 55.5
arahy.Tifrunner.gnm1.ann1.X3NAFX Arachis hypogaea HOM05D003848 ORTHO05D004616 4.7e-72 276.2 479 54.3
Glyma.02G146600 Glycine max HOM05D003848 ORTHO05D004616 4.7e-72 276.2 476 55.3
MD03G1262900 Malus domestica HOM05D003848 ORTHO05D004616 4.7e-72 276.2 176 80.7
Oeu028073.1 Olea europaea HOM05D003848 ORTHO05D004616 4.7e-72 276.2 400 57.8
CANSAT01G1819 Cannabis sativa HOM05D003848 ORTHO05D004616 1.4e-71 274.6 174 83.3
vmacro19513 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 1.4e-71 274.6 184 77.7
MSTRG.21553 Avicennia marina HOM05D003848 ORTHO05D004616 1.8e-71 274.2 448 56.5
TAR633G0718 Trochodendron aralioides HOM05D003848 ORTHO05D004616 3.1e-71 273.5 476 52.9
AagrBONN_evm.TU.Sc2ySwM_362.1784 Anthoceros agrestis HOM05D003848 ORTHO05D004616 4.0e-71 273.1 179 81.0
FAN22G1557 Fragaria x ananassa HOM05D003848 ORTHO05D004616 5.2e-71 272.7 169 83.4
CAN.G439.4 Capsicum annuum HOM05D003848 ORTHO05D004616 8.9e-71 271.9 476 50.6
Solyc11g071660.1 Solanum lycopersicum HOM05D003848 ORTHO05D004616 2.6e-70 270.4 466 52.1
TWI59G1147 Tripterygium wilfordii HOM05D003848 ORTHO05D004616 3.4e-70 270.0 482 54.4
Cc00_g04130 Coffea canephora HOM05D003848 ORTHO05D004616 5.8e-70 269.2 475 52.6
Mapoly0051s0007 Marchantia polymorpha HOM05D003848 ORTHO05D004616 5.8e-70 269.2 164 83.5
Thecc.01G276600 Theobroma cacao HOM05D003848 ORTHO05D004616 5.8e-70 269.2 498 53.6
Nitab4.5_0006700g0010 Nicotiana tabacum HOM05D003848 ORTHO05D004616 9.9e-70 268.5 452 56.0
Ah.02g110950 Amaranthus hybridus HOM05D003848 ORTHO05D004616 1.7e-69 267.7 164 84.8
PGSC0003DMG400046756 Solanum tuberosum HOM05D003848 ORTHO05D004616 2.9e-69 266.9 465 52.7
Aa31LG5G2360 Aethionema arabicum HOM05D003848 ORTHO05D004616 3.8e-69 266.5 165 83.0
ECA248G3600 Erigeron canadensis HOM05D003848 ORTHO05D004616 4.9e-69 266.2 419 53.5
Sc24g0003320 Simmondsia chinensis HOM05D003848 ORTHO05D004616 4.9e-69 266.2 521 49.3
Lalb_Chr06g0162931 Lupinus albus HOM05D003848 ORTHO05D004616 8.4e-69 265.4 416 59.6
Zm00001eb314820 Zea mays HOM05D003848 ORTHO05D004616 1.4e-68 264.6 426 52.1
Cc01_g10690 Coffea canephora HOM05D003848 ORTHO05D004616 2.4e-68 263.8 529 49.5
Gohir.A12G004500 Gossypium hirsutum HOM05D003848 ORTHO05D004616 3.2e-68 263.5 499 53.7
Pp3c9_17960 Physcomitrium patens HOM05D003848 ORTHO05D004616 3.2e-68 263.5 171 77.8
AUR62003538 Chenopodium quinoa HOM05D003848 ORTHO05D004616 4.2e-68 263.1 171 78.9
AUR62017852 Chenopodium quinoa HOM05D003848 ORTHO05D004616 5.4e-68 262.7 167 80.8
HanXRQChr01g0002971 Helianthus annuus HOM05D003848 ORTHO05D004616 7.1e-68 262.3 466 51.9
Psat4g156760 Pisum sativum HOM05D003848 ORTHO05D004616 7.1e-68 262.3 478 51.0
RcHm_v2.0_Chr4g0409951 Rosa chinensis HOM05D003848 ORTHO05D004616 7.1e-68 262.3 508 52.4
QL01p012613 Quercus lobata HOM05D003848 ORTHO05D004616 9.3e-68 261.9 445 53.0
CBR_g4136 Chara braunii HOM05D003848 ORTHO05D004616 1.2e-67 261.5 170 79.4
ClCG10G016420 Citrullus lanatus HOM05D003848 ORTHO05D004616 1.2e-67 261.5 149 87.9
FAN17G2080 Fragaria x ananassa HOM05D003848 ORTHO05D004616 1.2e-67 261.5 417 58.8
EL10Ac5g10556 Beta vulgaris HOM05D003848 ORTHO05D004616 1.6e-67 261.2 167 82.0
CsaV3_3G039920 Cucumis sativus L. HOM05D003848 ORTHO05D004616 1.6e-67 261.2 149 87.9
Prupe.8G239200 Prunus persica HOM05D003848 ORTHO05D004616 2.1e-67 260.8 452 52.9
Thhalv10028691m.g Eutrema salsugineum HOM05D003848 ORTHO05D004616 3.5e-67 260.0 168 80.4
Peaxi162Scf00217g00025 Petunia axillaris HOM05D003848 ORTHO05D004616 4.6e-67 259.6 449 55.0
Manes.05G077600 Manihot esculenta HOM05D003848 ORTHO05D004616 6.0e-67 259.2 490 49.8
Migut.D00312 Erythranthe guttata HOM05D003848 ORTHO05D004616 7.8e-67 258.8 464 53.9
Sp6g02650 Schrenkiella parvula HOM05D003848 ORTHO05D004616 1.0e-66 258.5 182 75.3
Actinidia24902 Actinidia chinensis HOM05D003848 ORTHO05D004616 1.7e-66 257.7 456 55.7
SMO231G0049 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 3.0e-66 256.9 158 83.5
SMO351G0411 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 3.0e-66 256.9 155 84.5
SEGI_20713 Sequoiadendron giganteum HOM05D003848 ORTHO05D004616 3.0e-66 256.9 592 39.4
Hund11854 Selenicereus undatus HOM05D003848 ORTHO05D004616 6.6e-66 255.8 158 84.8
AagrBONN_evm.TU.Sc2ySwM_344.5133 Anthoceros agrestis HOM05D003848 ORTHO05D004616 1.5e-65 254.6 154 84.4
FvH4_4g12190 Fragaria vesca HOM05D003848 ORTHO05D004616 1.5e-65 254.6 499 52.7
SGA_v2.0_scaffold1G00491 Striga asiatica HOM05D003848 ORTHO05D004616 2.5e-65 253.8 458 53.5
FAN07G0259 Fragaria x ananassa HOM05D003848 ORTHO05D004616 4.3e-65 253.1 499 52.5
Rhsim01G0273900 Rhododendron simsii HOM05D003848 ORTHO05D004616 5.6e-65 252.7 454 50.0
CARHR251050 Cardamine hirsuta HOM05D003848 ORTHO05D004616 7.3e-65 252.3 165 78.8
BcaC01g01560 Brassica carinata HOM05D003848 ORTHO05D004616 9.6e-65 251.9 169 75.7
Manes.01G206800 Manihot esculenta HOM05D003848 ORTHO05D004616 9.6e-65 251.9 483 44.5
Medtr8g028640 Medicago truncatula HOM05D003848 ORTHO05D004616 9.6e-65 251.9 478 53.6
C03p93080 Brassica napus HOM05D003848 ORTHO05D004616 1.6e-64 251.1 170 75.9
PSO210G3188 Papaver somniferum HOM05D003848 ORTHO05D004616 2.8e-64 250.4 490 47.8
AL6G50290 Arabidopsis lyrata HOM05D003848 ORTHO05D004616 6.2e-64 249.2 166 78.9
Lj1C175T4 Lonicera japonica HOM05D003848 ORTHO05D004616 1.1e-63 248.4 502 50.6
Duzib177G1090 Durio zibethinus HOM05D003848 ORTHO05D004616 2.4e-63 247.3 178 75.8
Lj2C1116T3 Lonicera japonica HOM05D003848 ORTHO05D004616 3.1e-63 246.9 492 51.2
Sed0011367 Sechium edule HOM05D003848 ORTHO05D004616 9.9e-62 241.9 496 50.0
C03p93150 Brassica napus HOM05D003848 ORTHO05D004616 1.3e-61 241.5 155 79.4
Lsat_1_v5_gn_5_184160 Lactuca sativa HOM05D003848 ORTHO05D004616 3.8e-61 240.0 403 56.6
BcaB01g02014 Brassica carinata HOM05D003848 ORTHO05D004616 1.1e-60 238.4 413 51.1
A09p02120 Brassica napus HOM05D003848 ORTHO05D004616 1.1e-60 238.4 135 85.9
BraA09t35861Z Brassica rapa HOM05D003848 ORTHO05D004616 1.1e-60 238.4 135 85.9
MELO3C009735.2 Cucumis melo HOM05D003848 ORTHO05D004616 1.9e-60 237.7 503 51.5
C08p37610 Brassica napus HOM05D003848 ORTHO05D004616 4.2e-60 236.5 134 85.8
BolC9t53150H Brassica oleracea HOM05D003848 ORTHO05D004616 4.2e-60 236.5 134 85.8
BcaC01g01554 Brassica carinata HOM05D003848 ORTHO05D004616 1.6e-59 234.6 133 85.7
BolC3t21610H Brassica oleracea HOM05D003848 ORTHO05D004616 2.7e-59 233.8 132 86.4
PSO832G2619 Papaver somniferum HOM05D003848 ORTHO05D004616 3.5e-59 233.4 502 46.2
C09p02220 Brassica napus HOM05D003848 ORTHO05D004616 6.0e-59 232.6 169 72.8
Carub.0006s3439 Capsella rubella HOM05D003848 ORTHO05D004616 6.0e-59 232.6 419 55.4
DCAR_000720 Daucus carota HOM05D003848 ORTHO05D004616 6.0e-59 232.6 456 51.8
BcaC04g24009 Brassica carinata HOM05D003848 ORTHO05D004616 1.3e-58 231.5 134 84.3
C03p93070 Brassica napus HOM05D003848 ORTHO05D004616 1.3e-58 231.5 132 85.6
C03p93100 Brassica napus HOM05D003848 ORTHO05D004616 1.3e-58 231.5 133 85.0
FAN22G0164 Fragaria x ananassa HOM05D003848 ORTHO05D004616 5.1e-58 229.6 481 52.0
BcaC01g01558 Brassica carinata HOM05D003848 ORTHO05D004616 8.7e-58 228.8 132 84.8
AT4G02720 Arabidopsis thaliana HOM05D003848 ORTHO05D004616 4.3e-57 226.5 406 54.7
BolC3t21613H Brassica oleracea HOM05D003848 ORTHO05D004616 5.6e-57 226.1 133 82.7
A09p54740 Brassica napus HOM05D003848 ORTHO05D004616 7.3e-57 225.7 129 85.3
BolC8t51344H Brassica oleracea HOM05D003848 ORTHO05D004616 7.3e-57 225.7 415 47.5
C09p02210 Brassica napus HOM05D003848 ORTHO05D004616 4.8e-56 223.0 129 84.5
A09p30470 Brassica napus HOM05D003848 ORTHO05D004616 6.2e-56 222.6 132 82.6
TPR.G23082 Trifolium pratense HOM05D003848 ORTHO05D004616 1.1e-55 221.9 135 85.2
CDE07G1463 Ceratophyllum demersum HOM05D003848 ORTHO05D004616 1.4e-55 221.5 169 69.8
BraA04t17534Z Brassica rapa HOM05D003848 ORTHO05D004616 1.8e-55 221.1 184 66.8
BcaC02g08380 Brassica carinata HOM05D003848 ORTHO05D004616 5.3e-55 219.5 178 68.0
BcaC01g01561 Brassica carinata HOM05D003848 ORTHO05D004616 9.0e-55 218.8 130 82.3
A04p19390 Brassica napus HOM05D003848 ORTHO05D004616 1.5e-54 218.0 178 66.9
QL03p072399 Quercus lobata HOM05D003848 ORTHO05D004616 1.5e-54 218.0 147 79.6
C04p54970 Brassica napus HOM05D003848 ORTHO05D004616 1.3e-53 214.9 143 78.3
BolC4t27032H Brassica oleracea HOM05D003848 ORTHO05D004616 1.3e-53 214.9 143 78.3
Rhsim10G0030500 Rhododendron simsii HOM05D003848 ORTHO05D004616 4.2e-52 209.9 376 50.3
SalBow4G2167 Salvia bowleyana HOM05D003848 ORTHO05D004616 4.0e-47 193.4 187 59.4
Ca_04836_v3 Cicer arietinum L. HOM05D001515 ORTHO05D004616 2.2e-45 187.6 133 75.2
Nn4g26302 Nelumbo nucifera HOM05D003848 ORTHO05D004616 2.5e-44 184.1 101 92.1
arahy.Tifrunner.gnm1.ann1.3GG3GM Arachis hypogaea HOM05D004461 ORTHO05D005543 2.1e-43 181.0 413 46.7
C03p93140 Brassica napus HOM05D003848 ORTHO05D004616 4.6e-43 179.9 121 78.5
SGA_v2.0_scaffold138G35328 Striga asiatica HOM05D003848 ORTHO05D004616 2.3e-42 177.6 161 62.7
BcaC03g13677 Brassica carinata HOM05D003848 ORTHO05D004616 1.9e-41 174.5 132 70.5
Oeu017054.1 Olea europaea HOM05D004271 ORTHO05D006011 4.3e-41 173.3 114 80.7
MCO02G035 Micromonas commoda HOM05D003848 ORTHO05D004616 5.3e-39 166.4 106 79.2
BcaC03g16168 Brassica carinata HOM05D003848 ORTHO05D004616 1.5e-38 164.9 103 77.7
Hma1.2p1_0667F.1_g199770 Hydrangea macrophylla HOM05D003848 ORTHO05D004616 1.2e-35 155.2 164 54.9
PRCOL_00001828 Prasinoderma coloniale HOM05D003848 ORTHO05D004616 3.0e-34 150.6 105 70.5
Cre01.g032250 Chlamydomonas reinhardtii HOM05D003848 ORTHO05D004616 1.3e-32 145.2 162 52.5
BraA09t40884Z Brassica rapa HOM05D003848 ORTHO05D004616 2.4e-31 141.0 84 81.0
BraA09t38617Z Brassica rapa HOM05D003848 ORTHO05D004616 1.5e-30 138.3 84 79.8
Os09g0455400 Oryza sativa ssp. japonica HOM05D003848 ORTHO05D004616 1.7e-29 134.8 71 93.0
Haze_27548 Corylus avellana HOM05D003848 ORTHO05D004616 1.4e-28 131.7 112 54.5
Actinidia21120 Actinidia chinensis HOM05D003848 ORTHO05D004616 2.5e-28 131.0 160 51.9
C02p39120 Brassica napus HOM05D003848 ORTHO05D004616 6.1e-27 126.3 85 71.8
BolC2t09922H Brassica oleracea HOM05D003848 ORTHO05D004616 1.8e-26 124.8 85 70.6
BNapus_Darmor_BZH_scaffold_38p02440 Brassica napus HOM05D003848 ORTHO05D004616 2.0e-22 111.3 68 79.4
unitig_0.g1042 Utricularia gibba HOM05D003848 ORTHO05D004616 5.9e-22 109.8 65 83.1
BNapus_Darmor_BZH_scaffold_38p02460 Brassica napus HOM05D003848 ORTHO05D004616 7.7e-22 109.4 66 80.3
vmacro19512 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 3.2e-20 104.0 168 42.9
BolC2t06954H Brassica oleracea HOM05D003848 ORTHO05D004616 2.1e-19 101.3 68 75.0
MD07G1100600 Malus domestica HOM05D003848 ORTHO05D004616 7.9e-19 99.4 56 89.3
Ca_05843_v3 Cicer arietinum L. HOM05D003848 ORTHO05D004616 6.7e-18 96.3 54 88.9
Prupe.6G167600 Prunus persica HOM05D003848 ORTHO05D004616 2.2e-16 91.3 56 82.1
FAN22G1718 Fragaria x ananassa HOM05D003848 ORTHO05D004616 3.1e-15 87.4 406 43.3
Lj1A173G45 Lonicera japonica HOM05D003848 ORTHO05D004616 8.2e-08 62.8 136 40.4
FAN22G0082 Fragaria x ananassa HOM05D003848 ORTHO05D035678 3.1e-07 60.8 166 35.5
BcaC01g01557 Brassica carinata HOM05D003848 ORTHO05D004616 7.7e-06 56.2 56 51.8


User provided reference genes

Program Settings