Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_008975 Vanilla planifolia HOM05D006236 ORTHO05D003486 7.7e-222 773.5 381 100.0
Os05g0423200 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 6.2e-38 162.5 390 32.3
Zm00001eb385310 Zea mays HOM05D006236 ORTHO05D003486 1.5e-28 131.3 357 29.7
Dinv14700 Davidia involucrata HOM05D006236 ORTHO05D003486 7.4e-23 112.5 355 26.5
ClCG09G021830 Citrullus lanatus HOM05D006236 ORTHO05D003486 2.4e-21 107.5 350 27.1
Os04g0539100 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 1.2e-20 105.1 373 24.9
CDE02G3425 Ceratophyllum demersum HOM05D006236 ORTHO05D003486 4.5e-20 103.2 344 27.3
ATR0824G107 Amborella trichopoda HOM05D049392 ORTHO05D003486 5.8e-20 102.8 102 47.1
PSO170G3037 Papaver somniferum HOM05D020877 ORTHO05D003486 7.6e-20 102.4 382 25.4
CiPaw.11G076600 Carya illinoinensis HOM05D006236 ORTHO05D003486 1.0e-19 102.1 110 46.4
Manes.02G169100 Manihot esculenta HOM05D006236 ORTHO05D003486 1.7e-19 101.3 363 26.4
Peaxi162Scf00062g00089 Petunia axillaris HOM05D012804 ORTHO05D003486 2.2e-19 100.9 96 46.9
Peaxi162Scf00234g00718 Petunia axillaris HOM05D012804 ORTHO05D003486 6.5e-19 99.4 362 25.7
Pp3c8_15980 Physcomitrium patens HOM05D006236 ORTHO05D003486 6.5e-19 99.4 96 47.9
Nn5g28446 Nelumbo nucifera HOM05D006236 ORTHO05D003486 8.4e-19 99.0 339 28.9
GSVIVG01008800001 Vitis vinifera HOM05D006236 ORTHO05D003486 1.1e-18 98.6 102 47.1
Nitab4.5_0000205g0060 Nicotiana tabacum HOM05D012804 ORTHO05D003486 1.4e-18 98.2 367 25.9
Aqoxy3G01606 Aquilegia oxysepala HOM05D020429 ORTHO05D023582 2.5e-18 97.4 352 27.3
TAR625G0695 Trochodendron aralioides HOM05D006236 ORTHO05D003486 2.5e-18 97.4 102 44.1
Pp3c14_13780 Physcomitrium patens HOM05D002377 ORTHO05D003486 5.5e-18 96.3 114 43.0
QL12p002389 Quercus lobata HOM05D006236 ORTHO05D003486 5.5e-18 96.3 102 42.2
SEGI_21165 Sequoiadendron giganteum HOM05D029892 ORTHO05D003486 5.5e-18 96.3 165 37.6
Aqoxy1G03360 Aquilegia oxysepala HOM05D020429 ORTHO05D023582 1.6e-17 94.7 376 27.4
SEGI_20168 Sequoiadendron giganteum HOM05D029892 ORTHO05D003486 1.6e-17 94.7 120 36.7
SMO196G0029 Selaginella moellendorffii HOM05D002377 ORTHO05D003486 2.7e-17 94.0 97 43.3
CiPaw.03G184300 Carya illinoinensis HOM05D006236 ORTHO05D003486 4.6e-17 93.2 350 28.0
Nitab4.5_0001925g0210 Nicotiana tabacum HOM05D012804 ORTHO05D003486 6.0e-17 92.8 96 46.9
Nitab4.5_0011766g0010 Nicotiana tabacum HOM05D012804 ORTHO05D003486 7.9e-17 92.4 96 45.8
PSO528G0080 Papaver somniferum HOM05D020877 ORTHO05D003486 7.9e-17 92.4 352 26.4
PGSC0003DMG400004651 Solanum tuberosum HOM05D012804 ORTHO05D003486 1.3e-16 91.7 116 38.8
Thecc.08G133800 Theobroma cacao HOM05D006236 ORTHO05D003486 2.3e-16 90.9 105 40.0
PSO528G0175 Papaver somniferum HOM05D020877 ORTHO05D003486 3.0e-16 90.5 387 24.8
CAN.G1187.8 Capsicum annuum HOM05D012804 ORTHO05D003486 3.9e-16 90.1 348 26.1
SEGI_27702 Sequoiadendron giganteum HOM05D002377 ORTHO05D003486 3.9e-16 90.1 143 40.6
PSO170G0742 Papaver somniferum HOM05D020877 ORTHO05D003486 6.7e-16 89.4 350 26.0
Solyc12g099920.2 Solanum lycopersicum HOM05D012804 ORTHO05D003486 6.7e-16 89.4 116 37.9
CsaV3_7G022170 Cucumis sativus L. HOM05D006236 ORTHO05D003486 8.7e-16 89.0 353 25.8
Sabra02G0060900 Salix brachista HOM05D006236 ORTHO05D003486 8.7e-16 89.0 99 44.4
Sopen12g034540 Solanum pennellii HOM05D012804 ORTHO05D003486 8.7e-16 89.0 116 37.9
RcHm_v2.0_Chr6g0296811 Rosa chinensis HOM05D006236 ORTHO05D003486 1.5e-15 88.2 428 23.4
Sed0000792 Sechium edule HOM05D006236 ORTHO05D003486 2.5e-15 87.4 344 25.0
Haze_03510 Corylus avellana HOM05D006236 ORTHO05D003486 4.3e-15 86.7 132 32.6
Potri.002G077500 Populus trichocarpa HOM05D006236 ORTHO05D003486 4.3e-15 86.7 99 43.4
TPR.G28699 Trifolium pratense HOM05D006236 ORTHO05D003486 4.3e-15 86.7 105 39.0
Phvul.009G156700 Phaseolus vulgaris HOM05D006236 ORTHO05D003486 9.6e-15 85.5 99 40.4
Gohir.D02G077800 Gossypium hirsutum HOM05D006236 ORTHO05D003486 1.3e-14 85.1 107 42.1
CAN.G484.6 Capsicum annuum HOM05D012804 ORTHO05D003486 1.6e-14 84.7 94 42.6
Ciclev10000428m.g Citrus clementina HOM05D006236 ORTHO05D003486 1.6e-14 84.7 97 40.2
Glyma.13G034700 Glycine max HOM05D006236 ORTHO05D003486 1.6e-14 84.7 106 38.7
Manes.18G083050 Manihot esculenta HOM05D006236 ORTHO05D003486 1.6e-14 84.7 89 46.1
Mapoly0015s0190 Marchantia polymorpha HOM05D006236 ORTHO05D003486 1.6e-14 84.7 173 32.4
Actinidia15208 Actinidia chinensis HOM05D006236 ORTHO05D003486 2.1e-14 84.3 375 24.8
MSTRG.24177 Avicennia marina HOM05D006236 ORTHO05D003486 2.1e-14 84.3 104 40.4
Glyma.04G206551 Glycine max HOM05D006236 ORTHO05D003486 2.1e-14 84.3 116 37.9
Zm00001eb075330 Zea mays HOM05D006236 ORTHO05D003486 2.8e-14 84.0 356 22.8
DCAR_028204 Daucus carota HOM05D006236 ORTHO05D003486 3.7e-14 83.6 99 36.4
BolC1t05537H Brassica oleracea HOM05D009282 ORTHO05D003486 6.2e-14 82.8 104 41.3
Lalb_Chr08g0237871 Lupinus albus HOM05D006236 ORTHO05D003486 6.2e-14 82.8 99 41.4
Cfa012635 Carpinus fangiana HOM05D006236 ORTHO05D003486 1.8e-13 81.3 113 33.6
Carub.0003s0731 Capsella rubella HOM05D009282 ORTHO05D003486 2.4e-13 80.9 99 38.4
Nitab4.5_0003471g0060 Nicotiana tabacum HOM05D012804 ORTHO05D003486 2.4e-13 80.9 380 26.3
Psat5g058120 Pisum sativum HOM05D006236 ORTHO05D003486 3.1e-13 80.5 94 43.6
Prupe.1G488800 Prunus persica HOM05D006236 ORTHO05D003486 3.1e-13 80.5 110 39.1
Glyma.14G156000 Glycine max HOM05D006236 ORTHO05D003486 4.1e-13 80.1 100 39.0
SGA_v2.0_scaffold28G11968 Striga asiatica HOM05D006236 ORTHO05D003486 4.1e-13 80.1 287 27.2
VMungo1309G0219 Vigna mungo HOM05D006236 ORTHO05D003486 4.1e-13 80.1 99 38.4
Atru.chr13.1589 Acer truncatum HOM05D006236 ORTHO05D003486 5.3e-13 79.7 204 29.9
BraA01t04367Z Brassica rapa HOM05D009282 ORTHO05D003486 6.9e-13 79.3 104 39.4
Ca_17011_v3 Cicer arietinum L. HOM05D006236 ORTHO05D003486 6.9e-13 79.3 94 41.5
SMO147G0016 Selaginella moellendorffii HOM05D006236 ORTHO05D003486 6.9e-13 79.3 108 36.1
AT4G01170 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 9.0e-13 79.0 109 34.9
Oeu047174.1 Olea europaea HOM05D006236 ORTHO05D003486 9.0e-13 79.0 95 41.1
AagrBONN_evm.TU.Sc2ySwM_228.1542 Anthoceros agrestis HOM05D002377 ORTHO05D003486 1.2e-12 78.6 128 33.6
Duzib093G1452 Durio zibethinus HOM05D006236 ORTHO05D003486 1.2e-12 78.6 345 26.1
MD15G1133200 Malus domestica HOM05D006236 ORTHO05D003486 1.2e-12 78.6 402 22.9
Phvul.001G067500 Phaseolus vulgaris HOM05D006236 ORTHO05D003486 1.2e-12 78.6 105 37.1
Dinv27264 Davidia involucrata HOM05D006236 ORTHO05D003486 1.5e-12 78.2 113 36.3
Sopen11g029920 Solanum pennellii HOM05D012804 ORTHO05D003486 1.5e-12 78.2 375 23.2
Glyma.06G159000 Glycine max HOM05D006236 ORTHO05D003486 2.0e-12 77.8 99 37.4
Medtr3g097180 Medicago truncatula HOM05D006236 ORTHO05D003486 2.6e-12 77.4 94 41.5
CARHR082440 Cardamine hirsuta HOM05D009282 ORTHO05D003486 3.4e-12 77.0 96 39.6
FAN15G3020 Fragaria x ananassa HOM05D006236 ORTHO05D003486 3.4e-12 77.0 423 25.8
CARHR070750 Cardamine hirsuta HOM05D009282 ORTHO05D003486 4.5e-12 76.6 102 38.2
Solyc11g072250.2 Solanum lycopersicum HOM05D012804 ORTHO05D003486 4.5e-12 76.6 378 22.5
Aa31LG4G7280 Aethionema arabicum HOM05D009282 ORTHO05D003486 5.8e-12 76.3 106 35.8
Lj1g0007441 Lotus japonicus HOM05D006236 ORTHO05D003486 5.8e-12 76.3 365 25.5
SpUn0522_0010 Schrenkiella parvula HOM05D009282 ORTHO05D003486 5.8e-12 76.3 100 38.0
Thhalv10020550m.g Eutrema salsugineum HOM05D009282 ORTHO05D003486 7.6e-12 75.9 96 38.5
Medtr1g026790 Medicago truncatula HOM05D006236 ORTHO05D003486 1.0e-11 75.5 263 25.5
Os04g0221000 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 1.0e-11 75.5 98 35.7
Prupe.3G258400 Prunus persica HOM05D006236 ORTHO05D003486 1.0e-11 75.5 376 25.5
Sed0021928 Sechium edule HOM05D006236 ORTHO05D003486 1.0e-11 75.5 353 22.7
Thhalv10018476m.g Eutrema salsugineum HOM05D009282 ORTHO05D003486 1.3e-11 75.1 104 36.5
PSO528G0025 Papaver somniferum HOM05D020877 ORTHO05D003486 1.3e-11 75.1 221 28.1
AT3G07730 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 2.9e-11 73.9 101 34.7
Sp3g06660 Schrenkiella parvula HOM05D009282 ORTHO05D003486 2.9e-11 73.9 95 38.9
C05p59590 Brassica napus HOM05D009282 ORTHO05D003486 5.0e-11 73.2 96 41.7
BolC5t34614H Brassica oleracea HOM05D009282 ORTHO05D003486 5.0e-11 73.2 96 41.7
Aa31LG7G5540 Aethionema arabicum HOM05D012602 ORTHO05D003486 6.5e-11 72.8 363 24.0
CANSAT78G2054 Cannabis sativa HOM05D006236 ORTHO05D003486 6.5e-11 72.8 352 26.1
Psat0s1315g0200 Pisum sativum HOM05D006236 ORTHO05D003486 6.5e-11 72.8 100 38.0
Sp5g32440 Schrenkiella parvula HOM05D009282 ORTHO05D003486 6.5e-11 72.8 104 34.6
AL3G19090 Arabidopsis lyrata HOM05D009282 ORTHO05D003486 1.1e-10 72.0 96 37.5
RcHm_v2.0_Chr6g0296801 Rosa chinensis HOM05D006236 ORTHO05D003486 1.1e-10 72.0 100 37.0
Carub.0002s2415 Capsella rubella HOM05D009282 ORTHO05D003486 1.4e-10 71.6 102 34.3
AT1G77270 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 1.9e-10 71.2 102 33.3
arahy.Tifrunner.gnm1.ann1.0TWQ75 Arachis hypogaea HOM05D024686 ORTHO05D003486 1.9e-10 71.2 101 35.6
arahy.Tifrunner.gnm1.ann1.E8STVK Arachis hypogaea HOM05D024686 ORTHO05D003486 1.9e-10 71.2 101 35.6
BcaB05g25029 Brassica carinata HOM05D009282 ORTHO05D003486 1.9e-10 71.2 113 32.7
Cc00_g10350 Coffea canephora HOM05D006236 ORTHO05D003486 2.5e-10 70.9 78 50.0
AL2G37450 Arabidopsis lyrata HOM05D009282 ORTHO05D003486 3.2e-10 70.5 100 34.0
arahy.Tifrunner.gnm1.ann1.BNP26P Arachis hypogaea HOM05D006236 ORTHO05D003486 3.2e-10 70.5 251 25.1
THA.LOC104813683 Tarenaya hassleriana HOM05D009282 ORTHO05D003486 3.2e-10 70.5 109 34.9
arahy.Tifrunner.gnm1.ann1.3CVD71 Arachis hypogaea HOM05D024686 ORTHO05D003486 4.2e-10 70.1 99 33.3
arahy.Tifrunner.gnm1.ann1.710PNE Arachis hypogaea HOM05D006236 ORTHO05D003486 4.2e-10 70.1 303 25.1
arahy.Tifrunner.gnm1.ann1.JAMD1N Arachis hypogaea HOM05D024686 ORTHO05D003486 4.2e-10 70.1 101 34.7
arahy.Tifrunner.gnm1.ann1.Y133Z2 Arachis hypogaea HOM05D024686 ORTHO05D003486 4.2e-10 70.1 101 34.7
Cfa010576 Carpinus fangiana HOM05D006236 ORTHO05D003486 4.2e-10 70.1 88 34.1
Migut.N03258 Erythranthe guttata HOM05D006236 ORTHO05D003486 5.5e-10 69.7 140 31.4
CANSAT78G0622 Cannabis sativa HOM05D006236 ORTHO05D003486 7.2e-10 69.3 100 38.0
Eucgr.E01002 Eucalyptus grandis HOM05D006236 ORTHO05D003486 7.2e-10 69.3 102 40.2
PGR044G2319 Punica granatum HOM05D006236 ORTHO05D003486 7.2e-10 69.3 100 40.0
TPR.G32494 Trifolium pratense HOM05D006236 ORTHO05D003486 7.2e-10 69.3 110 31.8
A02p21190 Brassica napus HOM05D009282 ORTHO05D003486 9.3e-10 68.9 113 31.9
A05p40490 Brassica napus HOM05D009282 ORTHO05D003486 9.3e-10 68.9 96 38.5
C02p34410 Brassica napus HOM05D009282 ORTHO05D003486 9.3e-10 68.9 113 31.9
BraA02t07136Z Brassica rapa HOM05D009282 ORTHO05D003486 9.3e-10 68.9 113 31.9
BraA05t22782Z Brassica rapa HOM05D009282 ORTHO05D003486 9.3e-10 68.9 96 38.5
BcaC03g15725 Brassica carinata HOM05D009282 ORTHO05D003486 1.2e-09 68.6 115 31.3
BolC2t09471H Brassica oleracea HOM05D009282 ORTHO05D003486 1.2e-09 68.6 115 31.3
BcaC05g29566 Brassica carinata HOM05D009282 ORTHO05D003486 2.1e-09 67.8 96 37.5
CANSAT78G1984 Cannabis sativa HOM05D006236 ORTHO05D003486 2.1e-09 67.8 376 22.9
TWI60G0548 Tripterygium wilfordii HOM05D006236 ORTHO05D003486 2.7e-09 67.4 99 34.3
Gorai.005G087400 Gossypium raimondii HOM05D006236 ORTHO05D003486 3.5e-09 67.0 349 24.4
Hund17351 Selenicereus undatus HOM05D031599 ORTHO05D003486 3.5e-09 67.0 204 26.5
Aqoxy6G00303 Aquilegia oxysepala HOM05D020429 ORTHO05D023582 6.1e-09 66.2 224 24.6
CARHR021930 Cardamine hirsuta HOM05D012602 ORTHO05D003486 6.1e-09 66.2 93 35.5
Oeu042695.1 Olea europaea HOM05D006236 ORTHO05D003486 6.1e-09 66.2 84 42.9
Medtr2g010820 Medicago truncatula HOM05D006236 ORTHO05D003486 7.9e-09 65.9 191 26.7
BcaB04g21273 Brassica carinata HOM05D009282 ORTHO05D003486 1.0e-08 65.5 96 35.4
FAN24G2475 Fragaria x ananassa HOM05D006236 ORTHO05D003486 1.0e-08 65.5 94 37.2
Medtr1g026800 Medicago truncatula HOM05D006236 ORTHO05D003486 1.0e-08 65.5 114 30.7
Carub.0001s2100 Capsella rubella HOM05D012602 ORTHO05D003486 1.3e-08 65.1 98 35.7
Medtr1g026810 Medicago truncatula HOM05D006236 ORTHO05D003486 1.3e-08 65.1 101 31.7
TPR.G28151 Trifolium pratense HOM05D006236 ORTHO05D003486 1.3e-08 65.1 125 32.0
Cc10_g13660 Coffea canephora HOM05D006236 ORTHO05D003486 1.8e-08 64.7 78 47.4
AT1G21560 Arabidopsis thaliana HOM05D012602 ORTHO05D003486 2.3e-08 64.3 98 33.7
FvH4_2g27990 Fragaria vesca HOM05D006236 ORTHO05D003486 3.0e-08 63.9 103 35.0
Oeu016130.1 Olea europaea HOM05D006236 ORTHO05D003486 3.0e-08 63.9 130 30.0
FvH4_2g27980 Fragaria vesca HOM05D006236 ORTHO05D003486 3.9e-08 63.5 107 35.5
FAN20G3074 Fragaria x ananassa HOM05D006236 ORTHO05D003486 3.9e-08 63.5 107 35.5
RcHm_v2.0_Chr6g0296791 Rosa chinensis HOM05D006236 ORTHO05D003486 5.1e-08 63.2 103 34.0
COL.COLO4_33391 Corchorus olitorius HOM05D006236 ORTHO05D003486 6.7e-08 62.8 82 42.7
SalBow2G2217 Salvia bowleyana HOM05D006236 ORTHO05D003486 6.7e-08 62.8 369 24.4
Thhalv10007934m.g Eutrema salsugineum HOM05D012602 ORTHO05D003486 8.7e-08 62.4 98 33.7
Gohir.A02G070600 Gossypium hirsutum HOM05D006236 ORTHO05D003486 8.7e-08 62.4 362 23.8
Gorai.005G087300 Gossypium raimondii HOM05D006236 ORTHO05D003486 8.7e-08 62.4 105 33.3
FAN02G2378 Fragaria x ananassa HOM05D006236 ORTHO05D003486 1.1e-07 62.0 109 33.9
FAN15G0899 Fragaria x ananassa HOM05D006236 ORTHO05D003486 1.1e-07 62.0 107 34.6
Solyc04g057970.3 Solanum lycopersicum HOM05D020480 ORTHO05D003486 1.1e-07 62.0 175 24.6
Sopen04g025830 Solanum pennellii HOM05D020480 ORTHO05D003486 1.5e-07 61.6 175 24.6
MD08G1159900 Malus domestica HOM05D006236 ORTHO05D003486 1.9e-07 61.2 99 33.3
AL1G34710 Arabidopsis lyrata HOM05D012602 ORTHO05D003486 3.3e-07 60.5 98 33.7
C05p20560 Brassica napus HOM05D012602 ORTHO05D003486 3.3e-07 60.5 108 29.6
BolC5t30754H Brassica oleracea HOM05D012602 ORTHO05D003486 3.3e-07 60.5 108 29.6
THA.LOC104812078 Tarenaya hassleriana HOM05D006236 ORTHO05D003486 3.3e-07 60.5 377 20.7
BcaC05g26073 Brassica carinata HOM05D012602 ORTHO05D003486 5.7e-07 59.7 108 29.6
TAR381G0115 Trochodendron aralioides HOM05D006236 ORTHO05D003486 5.7e-07 59.7 363 25.1
A06p17650 Brassica napus HOM05D012602 ORTHO05D003486 7.4e-07 59.3 108 29.6
BraA06t24857Z Brassica rapa HOM05D012602 ORTHO05D003486 7.4e-07 59.3 108 29.6
MSTRG.25355 Avicennia marina HOM05D006236 ORTHO05D003486 9.7e-07 58.9 98 35.7
Lsat_1_v5_gn_6_110341 Lactuca sativa HOM05D006236 ORTHO05D003486 2.8e-06 57.4 96 36.5
TPR.G24541 Trifolium pratense HOM05D006236 ORTHO05D003486 3.7e-06 57.0 195 27.2
Migut.C01072 Erythranthe guttata HOM05D006236 ORTHO05D003486 4.8e-06 56.6 70 40.0
FAN27G1104 Fragaria x ananassa HOM05D006236 ORTHO05D003486 8.2e-06 55.8 119 31.1
Gohir.D02G077700 Gossypium hirsutum HOM05D006236 ORTHO05D003486 8.2e-06 55.8 94 31.9
SalBow7G0481 Salvia bowleyana HOM05D006236 ORTHO05D003486 8.2e-06 55.8 153 26.8


User provided reference genes

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