Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_008863 Vanilla planifolia HOM05D004238 ORTHO05D004934 3.0e-221 771.5 389 100.0
HPP92_008849 Vanilla planifolia HOM05D004238 ORTHO05D004934 1.1e-167 593.6 356 88.2
Os01g0138900 Oryza sativa ssp. japonica HOM05D004238 ORTHO05D004934 1.1e-122 444.1 352 66.8
Hma1.2p1_1283F.1_g272760 Hydrangea macrophylla HOM05D004238 ORTHO05D004934 6.0e-121 438.3 352 65.9
Atru.chr9.900 Acer truncatum HOM05D004238 ORTHO05D004934 1.3e-120 437.2 352 65.1
Dinv28139 Davidia involucrata HOM05D004238 ORTHO05D004934 2.3e-120 436.4 352 65.6
CSS0018341 Camellia sinensis var. sinensis HOM05D004238 ORTHO05D004934 6.6e-120 434.9 352 65.9
TWI15G0256 Tripterygium wilfordii HOM05D004238 ORTHO05D004934 6.6e-120 434.9 352 65.1
CSS0035838 Camellia sinensis var. sinensis HOM05D004238 ORTHO05D004934 8.6e-120 434.5 352 65.9
Lj4g0001453 Lotus japonicus HOM05D004238 ORTHO05D004934 1.1e-119 434.1 352 64.5
GSVIVG01008335001 Vitis vinifera HOM05D004238 ORTHO05D004934 1.1e-119 434.1 352 64.8
TAR371G0763 Trochodendron aralioides HOM05D004238 ORTHO05D004934 9.6e-119 431.0 352 65.3
ATR0807G117 Amborella trichopoda HOM05D004238 ORTHO05D004934 1.6e-118 430.3 352 65.6
MELO3C017324.2 Cucumis melo HOM05D004238 ORTHO05D004934 1.6e-118 430.3 352 63.6
arahy.Tifrunner.gnm1.ann1.NC6GJT Arachis hypogaea HOM05D004238 ORTHO05D004934 3.6e-118 429.1 351 64.4
Ca_11587_v3 Cicer arietinum L. HOM05D004238 ORTHO05D004934 3.6e-118 429.1 352 64.2
Nitab4.5_0001986g0030 Nicotiana tabacum HOM05D004238 ORTHO05D004934 1.1e-117 427.6 369 62.1
Nn4g23948 Nelumbo nucifera HOM05D004238 ORTHO05D004934 1.8e-117 426.8 351 64.4
ClCG06G014610 Citrullus lanatus HOM05D004238 ORTHO05D004934 2.4e-117 426.4 352 62.8
Nitab4.5_0004028g0040 Nicotiana tabacum HOM05D004238 ORTHO05D004934 2.4e-117 426.4 369 61.5
CsaV3_1G004010 Cucumis sativus L. HOM05D004238 ORTHO05D004934 8.9e-117 424.5 352 63.1
Migut.I00409 Erythranthe guttata HOM05D004238 ORTHO05D004934 1.2e-116 424.1 352 63.4
arahy.Tifrunner.gnm1.ann1.KCMD1F Arachis hypogaea HOM05D004238 ORTHO05D004934 2.6e-116 422.9 352 63.4
Glyma.08G094600 Glycine max HOM05D004238 ORTHO05D004934 2.6e-116 422.9 352 63.4
MBI09_g25158_MAGBIO Magnolia biondii HOM05D004238 ORTHO05D004934 2.6e-116 422.9 351 64.7
Psat7g083560 Pisum sativum HOM05D004238 ORTHO05D004934 2.6e-116 422.9 352 62.5
TAR535G0010 Trochodendron aralioides HOM05D004238 ORTHO05D004934 3.4e-116 422.5 352 64.8
CiPaw.16G088800 Carya illinoinensis HOM05D004238 ORTHO05D004934 5.8e-116 421.8 352 62.8
Glyma.05G139300 Glycine max HOM05D004238 ORTHO05D004934 7.6e-116 421.4 352 63.1
PGR083G1292 Punica granatum HOM05D004238 ORTHO05D004934 9.9e-116 421.0 349 64.2
TAR426G0005 Trochodendron aralioides HOM05D004238 ORTHO05D004934 1.3e-115 420.6 351 64.7
Aqoxy3G00204 Aquilegia oxysepala HOM05D004238 ORTHO05D004934 1.7e-115 420.2 352 62.8
Eucgr.B00825 Eucalyptus grandis HOM05D004238 ORTHO05D004934 1.7e-115 420.2 352 63.6
Sabra12G0038000 Salix brachista HOM05D004238 ORTHO05D004934 1.7e-115 420.2 349 63.6
TPR.G5108 Trifolium pratense HOM05D004238 ORTHO05D004934 1.7e-115 420.2 352 62.2
VMungo0251G1679 Vigna mungo HOM05D004238 ORTHO05D004934 1.7e-115 420.2 352 62.8
Potri.012G054200 Populus trichocarpa HOM05D004238 ORTHO05D004934 2.2e-115 419.9 351 63.5
MD14G1229600 Malus domestica HOM05D004238 ORTHO05D004934 4.9e-115 418.7 352 63.4
PSO017G2643 Papaver somniferum HOM05D004238 ORTHO05D004934 4.9e-115 418.7 352 63.1
Phvul.002G182700 Phaseolus vulgaris HOM05D004238 ORTHO05D004934 4.9e-115 418.7 352 62.5
PGSC0003DMG400005732 Solanum tuberosum HOM05D004238 ORTHO05D004934 4.9e-115 418.7 352 62.8
PSO478G0260 Papaver somniferum HOM05D004238 ORTHO05D004934 1.1e-114 417.5 350 63.1
Solyc03g119200.4 Solanum lycopersicum HOM05D004238 ORTHO05D004934 1.1e-114 417.5 352 62.5
CAN.G1129.11 Capsicum annuum HOM05D004238 ORTHO05D004934 1.9e-114 416.8 352 62.5
COL.COLO4_20838 Corchorus olitorius HOM05D004238 ORTHO05D004934 1.9e-114 416.8 351 63.0
RcHm_v2.0_Chr7g0179451 Rosa chinensis HOM05D004238 ORTHO05D004934 1.9e-114 416.8 352 62.8
Prupe.5G224400 Prunus persica HOM05D004238 ORTHO05D004934 2.4e-114 416.4 352 63.6
Gohir.D07G071400 Gossypium hirsutum HOM05D004238 ORTHO05D004934 3.2e-114 416.0 350 62.9
Lj9C425T3 Lonicera japonica HOM05D004238 ORTHO05D004934 3.2e-114 416.0 352 63.4
Sed0011571 Sechium edule HOM05D004238 ORTHO05D004934 3.2e-114 416.0 351 62.4
Hund02354 Selenicereus undatus HOM05D004238 ORTHO05D004934 9.3e-114 414.5 353 63.5
DCAR_015154 Daucus carota HOM05D004238 ORTHO05D004934 1.2e-113 414.1 352 62.2
Oeu000985.1 Olea europaea HOM05D004238 ORTHO05D004934 1.2e-113 414.1 377 59.7
MSTRG.11313 Avicennia marina HOM05D004238 ORTHO05D004934 1.6e-113 413.7 352 63.1
Lalb_Chr13g0293671 Lupinus albus HOM05D004238 ORTHO05D004934 1.6e-113 413.7 351 61.5
FAN13G1096 Fragaria x ananassa HOM05D004238 ORTHO05D004934 2.1e-113 413.3 352 61.9
Cpa.g.sc3.467 Carica papaya HOM05D004238 ORTHO05D004934 2.7e-113 412.9 351 61.8
Duzib084G0471 Durio zibethinus HOM05D004238 ORTHO05D004934 3.5e-113 412.5 351 62.1
FAN18G3483 Fragaria x ananassa HOM05D004238 ORTHO05D004934 4.6e-113 412.1 352 61.9
Peaxi162Scf00683g00158 Petunia axillaris HOM05D004238 ORTHO05D004934 4.6e-113 412.1 352 61.9
Thecc.03G040700 Theobroma cacao HOM05D004238 ORTHO05D004934 4.6e-113 412.1 350 62.3
FvH4_5g16670 Fragaria vesca HOM05D004238 ORTHO05D004934 3.9e-112 409.1 350 61.7
THA.LOC104820382 Tarenaya hassleriana HOM05D004238 ORTHO05D004934 3.9e-112 409.1 356 61.8
CANSAT80G2380 Cannabis sativa HOM05D004238 ORTHO05D004934 5.1e-112 408.7 352 59.9
Haze_18725 Corylus avellana HOM05D004238 ORTHO05D004934 1.1e-111 407.5 366 60.1
C05p47680 Brassica napus HOM05D004238 ORTHO05D004934 1.5e-111 407.1 355 60.3
BolC5t33477H Brassica oleracea HOM05D004238 ORTHO05D004934 1.9e-111 406.8 355 60.3
Thhalv10020846m.g Eutrema salsugineum HOM05D004238 ORTHO05D004934 2.5e-111 406.4 355 60.3
Aa31LG8G5120 Aethionema arabicum HOM05D004238 ORTHO05D004934 5.6e-111 405.2 352 59.4
Rhsim08G0130500 Rhododendron simsii HOM05D004238 ORTHO05D004934 9.6e-111 404.4 384 57.6
Rhsim08G0130600 Rhododendron simsii HOM05D004238 ORTHO05D004934 9.6e-111 404.4 384 57.6
Carub.0003s1804 Capsella rubella HOM05D004238 ORTHO05D004934 1.3e-110 404.1 355 59.4
Cc04_g06880 Coffea canephora HOM05D004238 ORTHO05D004934 1.3e-110 404.1 369 59.6
BraA05t21977Z Brassica rapa HOM05D004238 ORTHO05D004934 1.6e-110 403.7 353 60.1
MD06G1220000 Malus domestica HOM05D004238 ORTHO05D004934 2.1e-110 403.3 371 59.0
FAN08G0774 Fragaria x ananassa HOM05D004238 ORTHO05D004934 3.6e-110 402.5 365 59.7
AT3G18270 Arabidopsis thaliana HOM05D004238 ORTHO05D004934 2.4e-109 399.8 349 59.6
A05p31380 Brassica napus HOM05D004238 ORTHO05D004934 3.1e-109 399.4 353 58.9
Thhalv10022164m.g Eutrema salsugineum HOM05D004238 ORTHO05D004934 4.0e-109 399.1 350 60.0
AL3G31500 Arabidopsis lyrata HOM05D004238 ORTHO05D004934 1.2e-108 397.5 353 59.2
Lsat_1_v5_gn_8_143241 Lactuca sativa HOM05D004238 ORTHO05D004934 1.5e-108 397.1 361 59.8
Dinv34796 Davidia involucrata HOM05D004238 ORTHO05D004934 4.9e-107 392.1 353 59.2
HanXRQChr17g0559411 Helianthus annuus HOM05D004238 ORTHO05D004934 7.1e-106 388.3 349 60.2
Sc04g0003400 Simmondsia chinensis HOM05D004238 ORTHO05D004934 7.1e-106 388.3 352 59.4
FAN04G1535 Fragaria x ananassa HOM05D004238 ORTHO05D004934 3.0e-104 382.9 352 59.4
DCAR_011371 Daucus carota HOM05D004238 ORTHO05D004934 5.1e-104 382.1 352 56.8
Gorai.001G075300 Gossypium raimondii HOM05D004238 ORTHO05D004934 1.5e-103 380.6 331 61.3
Dinv12220 Davidia involucrata HOM05D004238 ORTHO05D004934 6.2e-102 375.2 324 62.3
DCAR_011373 Daucus carota HOM05D004238 ORTHO05D004934 2.6e-100 369.8 354 54.5
CDE08G0051 Ceratophyllum demersum HOM05D004238 ORTHO05D004934 2.4e-98 363.2 351 56.1
Manes.01G014900 Manihot esculenta HOM05D004238 ORTHO05D004934 1.6e-97 360.5 351 57.0
Ciclev10011789m.g Citrus clementina HOM05D004238 ORTHO05D004934 2.3e-96 356.7 351 55.0
Sp3g16390 Schrenkiella parvula HOM05D004238 ORTHO05D004934 6.7e-96 355.1 340 57.1
Atru.chr1.1618 Acer truncatum HOM05D004238 ORTHO05D004934 1.5e-95 354.0 352 55.4
Manes.02G071200 Manihot esculenta HOM05D004238 ORTHO05D004934 1.3e-94 350.9 352 53.7
DCAR_024088 Daucus carota HOM05D004238 ORTHO05D004934 2.1e-94 350.1 333 55.0
Pp3c2_34370 Physcomitrium patens HOM05D004238 ORTHO05D004934 5.3e-93 345.5 346 52.6
Duzib138G0550 Durio zibethinus HOM05D004238 ORTHO05D004934 1.2e-92 344.4 352 53.1
ECA233G1745 Erigeron canadensis HOM05D004238 ORTHO05D004934 1.5e-92 344.0 314 58.3
CsaV3_2G033830 Cucumis sativus L. HOM05D004238 ORTHO05D004934 1.1e-90 337.8 351 51.9
COL.COLO4_09370 Corchorus olitorius HOM05D004238 ORTHO05D004934 4.6e-89 332.4 352 50.3
Thecc.04G129000 Theobroma cacao HOM05D004238 ORTHO05D004934 4.6e-89 332.4 352 51.7
SMO146G0383 Selaginella moellendorffii HOM05D004238 ORTHO05D004934 1.0e-88 331.3 340 54.4
Gohir.D11G171700 Gossypium hirsutum HOM05D004238 ORTHO05D004934 2.3e-88 330.1 351 50.1
Gohir.A11G165600 Gossypium hirsutum HOM05D004238 ORTHO05D004934 2.5e-87 326.6 351 49.9
Mapoly0058s0107 Marchantia polymorpha HOM05D004238 ORTHO05D004934 3.7e-86 322.8 345 50.7
ClCG11G007750 Citrullus lanatus HOM05D004238 ORTHO05D004934 1.0e-83 314.7 362 47.8
CiPaw.15G135000 Carya illinoinensis HOM05D004238 ORTHO05D004934 2.2e-83 313.5 281 59.1
CANSAT78G0772 Cannabis sativa HOM05D004238 ORTHO05D004934 8.4e-83 311.6 353 48.4
SMO146G0146 Selaginella moellendorffii HOM05D004238 ORTHO05D004934 4.2e-82 309.3 340 52.6
Cpa.g.sc170.33 Carica papaya HOM05D004238 ORTHO05D004934 7.1e-82 308.5 353 48.4
Zm00001eb335570 Zea mays HOM05D004238 ORTHO05D004934 3.9e-80 302.8 245 66.1
DCAR_011367 Daucus carota HOM05D004238 ORTHO05D004934 4.3e-79 299.3 339 47.5
DCAR_011366 Daucus carota HOM05D004238 ORTHO05D004934 9.0e-77 291.6 347 49.3
Zm00001eb124820 Zea mays HOM05D004238 ORTHO05D004934 1.2e-76 291.2 235 66.8
Gohir.A07G066800 Gossypium hirsutum HOM05D004238 ORTHO05D004934 7.7e-76 288.5 219 68.5
DCAR_011370 Daucus carota HOM05D004238 ORTHO05D004934 1.0e-75 288.1 400 44.5
Eucgr.B00826 Eucalyptus grandis HOM05D004238 ORTHO05D004934 6.1e-65 252.3 339 46.3
Potri.015G044400 Populus trichocarpa HOM05D004238 ORTHO05D004934 1.3e-62 244.6 289 51.9
CARHR093620 Cardamine hirsuta HOM05D004238 ORTHO05D004934 6.5e-59 232.3 206 59.2
DCAR_000177 Daucus carota HOM05D004238 ORTHO05D004934 4.1e-53 213.0 204 55.4
Nn2g15201 Nelumbo nucifera HOM05D004238 ORTHO05D004934 1.9e-50 204.1 201 57.2
PRCOL_00000826 Prasinoderma coloniale HOM05D004238 ORTHO05D004934 4.8e-46 189.5 310 40.3
TAR371G0419 Trochodendron aralioides HOM05D004238 ORTHO05D004934 4.8e-46 189.5 151 64.2
MELO3C008155.2 Cucumis melo HOM05D004238 ORTHO05D004934 1.7e-35 154.5 174 48.9
Duzib205G0622 Durio zibethinus HOM05D004238 ORTHO05D004934 2.9e-35 153.7 189 47.6
AagrBONN_evm.TU.Sc2ySwM_117.3507 Anthoceros agrestis HOM05D004238 ORTHO05D004934 4.3e-34 149.8 168 50.6
Psat5g132800 Pisum sativum HOM05D004238 ORTHO05D004934 2.8e-33 147.1 118 62.7
DCAR_011376 Daucus carota HOM05D004238 ORTHO05D004934 1.0e-32 145.2 187 44.4
TPR.G26740 Trifolium pratense HOM05D004238 ORTHO05D004934 4.0e-32 143.3 88 76.1
arahy.Tifrunner.gnm1.ann1.78LW43 Arachis hypogaea HOM05D004238 ORTHO05D004934 2.2e-30 137.5 110 62.7
arahy.Tifrunner.gnm1.ann1.8NU3PL Arachis hypogaea HOM05D004238 ORTHO05D004934 2.2e-30 137.5 110 62.7
Psat0s2250g0040 Pisum sativum HOM05D005720 ORTHO05D006984 4.9e-30 136.3 159 49.7
Lalb_Chr00c06g0404671 Lupinus albus HOM05D004238 ORTHO05D004934 1.1e-29 135.2 110 63.6
Sed0014968 Sechium edule HOM05D004238 ORTHO05D004934 3.0e-27 127.1 96 64.6
arahy.Tifrunner.gnm1.ann1.K93WBA Arachis hypogaea HOM05D004238 ORTHO05D004934 2.5e-26 124.0 100 63.0
Sabra15G0040700 Salix brachista HOM05D004238 ORTHO05D004934 1.4e-21 108.2 96 58.3
C05p38610 Brassica napus HOM05D004238 ORTHO05D004934 6.0e-20 102.8 104 53.8
DCAR_000092 Daucus carota HOM05D004238 ORTHO05D004934 7.8e-20 102.4 74 67.6
Nn4g22334 Nelumbo nucifera HOM05D004238 ORTHO05D004934 2.3e-19 100.9 73 68.5
C08p35620 Brassica napus HOM05D004238 ORTHO05D004934 6.6e-19 99.4 91 56.0
Atru.chr12.656 Acer truncatum HOM05D004238 ORTHO05D004934 1.2e-17 95.1 79 62.0
Psat0s1333g0160 Pisum sativum HOM05D004238 ORTHO05D004934 1.2e-17 95.1 79 57.0
SEGI_36538 Sequoiadendron giganteum HOM05D004238 ORTHO05D004934 1.6e-17 94.7 123 44.7
Nn4g22335 Nelumbo nucifera HOM05D004238 ORTHO05D004934 2.8e-17 94.0 66 69.7
Atru.chr12.683 Acer truncatum HOM05D004238 ORTHO05D004934 6.2e-17 92.8 75 62.7
Pp3s30_460 Physcomitrium patens HOM05D019034 ORTHO05D004934 3.1e-16 90.5 367 24.3
BolC5t32601H Brassica oleracea HOM05D004238 ORTHO05D004934 4.0e-16 90.1 91 53.8
BcaC08g44328 Brassica carinata HOM05D004238 ORTHO05D004934 1.3e-14 85.1 68 55.9
C06p17530 Brassica napus HOM05D004238 ORTHO05D004934 1.3e-14 85.1 68 55.9
BcaC05g27863 Brassica carinata HOM05D002270 ORTHO05D002866 1.1e-13 82.0 111 45.0
arahy.Tifrunner.gnm1.ann1.QA2PAR Arachis hypogaea HOM05D004238 ORTHO05D004934 2.4e-13 80.9 71 59.2
Solyc08g045760.1 Solanum lycopersicum HOM05D004238 ORTHO05D004934 1.3e-11 75.1 62 59.7
Atru.chr12.682 Acer truncatum HOM05D004238 ORTHO05D004934 1.7e-11 74.7 64 60.9
arahy.Tifrunner.gnm1.ann1.04J95Q Arachis hypogaea HOM05D003782 ORTHO05D004361 1.1e-10 72.0 53 67.9
BcaC04g23227 Brassica carinata HOM05D004238 ORTHO05D004934 1.1e-10 72.0 62 53.2
BcaC08g45100 Brassica carinata HOM05D004238 ORTHO05D004934 1.1e-10 72.0 62 53.2
BolC6t37880H Brassica oleracea HOM05D004238 ORTHO05D004934 1.1e-10 72.0 62 53.2
BolC9t53984H Brassica oleracea HOM05D004238 ORTHO05D004934 1.1e-10 72.0 62 53.2
VMungo1127G1492 Vigna mungo HOM05D000769 ORTHO05D000598 1.1e-10 72.0 69 52.2
Zm00001eb312660 Zea mays HOM05D004238 ORTHO05D004934 1.1e-10 72.0 76 56.6
BcaC06g36376 Brassica carinata HOM05D004238 ORTHO05D004934 7.3e-10 69.3 62 53.2
arahy.Tifrunner.gnm1.ann1.QI3NWI Arachis hypogaea HOM05D006876 ORTHO05D008708 4.7e-09 66.6 59 57.6
BolC6t36947H Brassica oleracea HOM05D004238 ORTHO05D004934 1.5e-07 61.6 51 52.9
CiPaw.05G119100 Carya illinoinensis HOM05D003438 ORTHO05D004235 7.6e-07 59.3 363 24.0
Zm00001eb184180 Zea mays HOM05D005051 ORTHO05D005945 2.9e-06 57.4 44 61.4
Zm00001eb084840 Zea mays HOM05D004238 ORTHO05D004934 6.4e-06 56.2 47 68.1


User provided reference genes

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