Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_008616 Vanilla planifolia HOM05D000452 ORTHO05D005748 2.5e-192 675.2 333 100.0
Aqoxy1G01223 Aquilegia oxysepala HOM05D000452 ORTHO05D005748 3.8e-124 448.7 327 65.4
TAR636G2205 Trochodendron aralioides HOM05D000452 ORTHO05D005748 3.8e-124 448.7 328 66.2
PSO339G2396 Papaver somniferum HOM05D000452 ORTHO05D005748 6.5e-124 448.0 328 65.2
CiPaw.13G114400 Carya illinoinensis HOM05D000452 ORTHO05D005748 3.9e-121 438.7 326 66.3
Actinidia03722 Actinidia chinensis HOM05D000452 ORTHO05D005748 8.7e-121 437.6 323 66.3
CANSAT54G2994 Cannabis sativa HOM05D000452 ORTHO05D005748 1.3e-119 433.7 331 63.4
Cpa.g.sc279.1 Carica papaya HOM05D000452 ORTHO05D005748 2.8e-119 432.6 334 62.6
Cfa011305 Carpinus fangiana HOM05D000452 ORTHO05D005748 2.8e-119 432.6 319 65.8
TAR633G0246 Trochodendron aralioides HOM05D000452 ORTHO05D005748 2.8e-119 432.6 317 65.9
Haze_23811 Corylus avellana HOM05D000452 ORTHO05D005748 6.3e-119 431.4 327 63.9
Nn2g10818 Nelumbo nucifera HOM05D000452 ORTHO05D005748 6.3e-119 431.4 317 65.0
CSS0006947 Camellia sinensis var. sinensis HOM05D000452 ORTHO05D005748 1.8e-118 429.9 321 64.8
Hma1.2p1_0307F.1_g119780 Hydrangea macrophylla HOM05D000452 ORTHO05D005748 1.8e-118 429.9 321 65.4
Manes.04G019700 Manihot esculenta HOM05D000452 ORTHO05D005748 1.8e-118 429.9 317 65.9
COL.COLO4_18319 Corchorus olitorius HOM05D000452 ORTHO05D002419 6.9e-118 427.9 284 70.8
Potri.009G011400 Populus trichocarpa HOM05D000452 ORTHO05D005748 1.5e-117 426.8 319 63.6
GSVIVG01025200001 Vitis vinifera HOM05D000452 ORTHO05D005748 2.6e-117 426.0 309 67.0
Prupe.6G103100 Prunus persica HOM05D000452 ORTHO05D005748 4.5e-117 425.2 341 61.0
MD03G1119900 Malus domestica HOM05D000452 ORTHO05D005748 7.7e-117 424.5 319 64.6
Sc06g0010310 Simmondsia chinensis HOM05D000452 ORTHO05D005748 7.7e-117 424.5 326 63.5
Thecc.09G342400 Theobroma cacao HOM05D000452 ORTHO05D005748 1.3e-116 423.7 320 63.8
Sed0009159 Sechium edule HOM05D000452 ORTHO05D005748 1.7e-116 423.3 324 61.7
FvH4_3g31960 Fragaria vesca HOM05D000452 ORTHO05D005748 5.0e-116 421.8 325 62.8
FAN21G3667 Fragaria x ananassa HOM05D000452 ORTHO05D005748 5.0e-116 421.8 325 62.8
TWI31G0927 Tripterygium wilfordii HOM05D000452 ORTHO05D005748 8.5e-116 421.0 317 62.5
Peaxi162Scf00270g00311 Petunia axillaris HOM05D000452 ORTHO05D005748 1.1e-115 420.6 319 64.3
FAN11G0834 Fragaria x ananassa HOM05D000452 ORTHO05D005748 1.4e-115 420.2 325 62.5
MD11G1137500 Malus domestica HOM05D000452 ORTHO05D005748 1.4e-115 420.2 300 66.3
TWI79G0017 Tripterygium wilfordii HOM05D000452 ORTHO05D005748 1.4e-115 420.2 320 62.2
Nitab4.5_0005742g0010 Nicotiana tabacum HOM05D000452 ORTHO05D005748 1.9e-115 419.9 328 61.9
Gohir.D03G135600 Gossypium hirsutum HOM05D000452 ORTHO05D005748 3.2e-115 419.1 335 61.8
RcHm_v2.0_Chr5g0058721 Rosa chinensis HOM05D000452 ORTHO05D005748 3.2e-115 419.1 324 61.7
Cc01_g11000 Coffea canephora HOM05D000452 ORTHO05D005748 4.2e-115 418.7 313 62.3
Gohir.A03G032800 Gossypium hirsutum HOM05D000452 ORTHO05D005748 4.2e-115 418.7 335 62.4
Gorai.003G142700 Gossypium raimondii HOM05D000452 ORTHO05D005748 4.2e-115 418.7 312 65.1
FAN25G3410 Fragaria x ananassa HOM05D000452 ORTHO05D005748 7.2e-115 417.9 325 62.2
PSO384G2013 Papaver somniferum HOM05D000452 ORTHO05D005748 7.2e-115 417.9 321 62.9
Nitab4.5_0000602g0100 Nicotiana tabacum HOM05D000452 ORTHO05D005748 1.6e-114 416.8 328 61.9
SGA_v2.0_scaffold180G39657 Striga asiatica HOM05D000452 ORTHO05D005748 2.7e-114 416.0 306 64.7
PGSC0003DMG400008083 Solanum tuberosum HOM05D000452 ORTHO05D005748 3.6e-114 415.6 321 62.9
vmacro03204 Vaccinium macrocarpon HOM05D000452 ORTHO05D005748 3.6e-114 415.6 319 63.9
Rhsim13G0095000 Rhododendron simsii HOM05D000452 ORTHO05D005748 1.8e-113 413.3 318 63.5
ClCG01G013590 Citrullus lanatus HOM05D000452 ORTHO05D005748 2.3e-113 412.9 313 61.3
Solyc11g069520.2 Solanum lycopersicum HOM05D000452 ORTHO05D005748 3.0e-113 412.5 322 62.4
Sopen11g028230 Solanum pennellii HOM05D000452 ORTHO05D005748 3.0e-113 412.5 322 62.4
Glyma.11G145300 Glycine max HOM05D000452 ORTHO05D005748 3.9e-113 412.1 318 61.9
AUR62024960 Chenopodium quinoa HOM05D000452 ORTHO05D005748 8.8e-113 411.0 322 62.7
AUR62042196 Chenopodium quinoa HOM05D000452 ORTHO05D005748 8.8e-113 411.0 322 62.4
Lalb_Chr01g0004351 Lupinus albus HOM05D000452 ORTHO05D005748 1.5e-112 410.2 312 62.8
PSO339G5930 Papaver somniferum HOM05D000452 ORTHO05D005748 2.0e-112 409.8 321 61.7
Phvul.011G080300 Phaseolus vulgaris HOM05D000452 ORTHO05D005748 2.0e-112 409.8 309 64.4
Zm00001eb271200 Zea mays HOM05D000452 ORTHO05D005748 2.0e-112 409.8 320 64.7
Zm00001eb376480 Zea mays HOM05D000452 ORTHO05D005748 2.0e-112 409.8 330 63.0
arahy.Tifrunner.gnm1.ann1.I1PATR Arachis hypogaea HOM05D000452 ORTHO05D005748 2.5e-112 409.5 309 63.4
MELO3C004897.2 Cucumis melo HOM05D000452 ORTHO05D005748 2.5e-112 409.5 323 60.1
VMungo1127G0723 Vigna mungo HOM05D000452 ORTHO05D005748 3.3e-112 409.1 307 64.2
arahy.Tifrunner.gnm1.ann1.S7ZFT4 Arachis hypogaea HOM05D000452 ORTHO05D005748 4.3e-112 408.7 313 62.6
Migut.D02233 Erythranthe guttata HOM05D000452 ORTHO05D005748 5.7e-112 408.3 316 60.8
Lj3g0027876 Lotus japonicus HOM05D000452 ORTHO05D005748 9.7e-112 407.5 313 64.2
arahy.Tifrunner.gnm1.ann1.AXM315 Arachis hypogaea HOM05D000452 ORTHO05D005748 1.7e-111 406.8 313 62.3
CsaV3_1G013960 Cucumis sativus L. HOM05D000452 ORTHO05D005748 3.7e-111 405.6 307 60.9
Lalb_Chr19g0137171 Lupinus albus HOM05D000452 ORTHO05D005748 3.7e-111 405.6 313 62.0
Lj1C203G7 Lonicera japonica HOM05D000452 ORTHO05D005748 6.3e-111 404.8 315 63.2
Medtr4g058890 Medicago truncatula HOM05D000452 ORTHO05D005748 1.1e-110 404.1 323 61.6
THA.LOC104826371 Tarenaya hassleriana HOM05D000452 ORTHO05D005748 1.1e-110 404.1 303 64.4
AT1G08030 Arabidopsis thaliana HOM05D000452 ORTHO05D005748 3.1e-110 402.5 314 63.1
Oeu030194.1 Olea europaea HOM05D000452 ORTHO05D005748 1.2e-109 400.6 312 60.6
EL10Ac9g22533 Beta vulgaris HOM05D000452 ORTHO05D005748 3.4e-109 399.1 352 57.7
arahy.Tifrunner.gnm1.ann1.WEDN33 Arachis hypogaea HOM05D000452 ORTHO05D005748 7.7e-109 397.9 307 62.9
CDE02G3238 Ceratophyllum demersum HOM05D000452 ORTHO05D005748 1.0e-108 397.5 309 61.2
Lj2C1024T12 Lonicera japonica HOM05D000452 ORTHO05D005748 1.0e-108 397.5 317 59.3
HanXRQChr01g0019321 Helianthus annuus HOM05D000452 ORTHO05D005748 1.3e-108 397.1 303 62.4
BcaB02g06693 Brassica carinata HOM05D000452 ORTHO05D005748 5.0e-108 395.2 306 62.7
AL1G18360 Arabidopsis lyrata HOM05D000452 ORTHO05D005748 1.1e-107 394.0 304 63.2
Carub.0001s0737 Capsella rubella HOM05D000452 ORTHO05D005748 1.9e-107 393.3 308 62.0
Sp1g06650 Schrenkiella parvula HOM05D000452 ORTHO05D005748 1.9e-107 393.3 314 61.5
ECA248G3240 Erigeron canadensis HOM05D000452 ORTHO05D005748 2.5e-107 392.9 302 62.9
Thhalv10007441m.g Eutrema salsugineum HOM05D000452 ORTHO05D005748 2.5e-107 392.9 304 63.5
THA.LOC104800598 Tarenaya hassleriana HOM05D000452 ORTHO05D005748 5.5e-107 391.7 303 62.7
A08p35370 Brassica napus HOM05D000452 ORTHO05D005748 7.2e-107 391.3 311 61.1
Ciclev10028288m.g Citrus clementina HOM05D000452 ORTHO05D005748 7.2e-107 391.3 312 58.7
DCAR_022745 Daucus carota HOM05D000452 ORTHO05D005748 7.2e-107 391.3 309 61.5
CARHR007800 Cardamine hirsuta HOM05D000452 ORTHO05D005748 2.1e-106 389.8 314 61.5
SEGI_04235 Sequoiadendron giganteum HOM05D000452 ORTHO05D005748 2.1e-106 389.8 333 56.2
BcaC05g24718 Brassica carinata HOM05D000452 ORTHO05D005748 3.6e-106 389.0 301 62.1
BolC5t29365H Brassica oleracea HOM05D000452 ORTHO05D005748 3.6e-106 389.0 301 62.1
QL01p021907 Quercus lobata HOM05D000452 ORTHO05D005748 4.7e-106 388.7 406 50.5
BraA06t23716Z Brassica rapa HOM05D000452 ORTHO05D005748 6.1e-106 388.3 306 62.4
MSTRG.21118 Avicennia marina HOM05D000452 ORTHO05D005748 1.0e-105 387.5 306 59.5
A06p05090 Brassica napus HOM05D000452 ORTHO05D005748 1.4e-105 387.1 306 62.1
CsaV3_1G013970 Cucumis sativus L. HOM05D000452 ORTHO05D005748 1.4e-105 387.1 322 56.8
BraA08t35443Z Brassica rapa HOM05D000452 ORTHO05D005748 1.8e-105 386.7 310 61.3
HanXRQChr07g0195801 Helianthus annuus HOM05D000452 ORTHO05D005748 2.3e-105 386.3 318 61.6
C05p06050 Brassica napus HOM05D000452 ORTHO05D005748 6.7e-105 384.8 301 61.5
Oeu014003.1 Olea europaea HOM05D000452 ORTHO05D005748 8.8e-105 384.4 304 59.5
CsaV3_1G013990 Cucumis sativus L. HOM05D000452 ORTHO05D005748 1.5e-104 383.6 322 56.5
Eucgr.B02508 Eucalyptus grandis HOM05D000452 ORTHO05D005748 2.6e-104 382.9 324 58.3
BolC8t47149H Brassica oleracea HOM05D000452 ORTHO05D005748 4.4e-104 382.1 308 60.4
C08p03470 Brassica napus HOM05D000452 ORTHO05D005748 5.7e-104 381.7 313 58.8
ECA238G2818 Erigeron canadensis HOM05D000452 ORTHO05D005748 4.8e-103 378.6 312 59.6
Lsat_1_v5_gn_1_64080 Lactuca sativa HOM05D000452 ORTHO05D005748 1.7e-100 370.2 293 61.4
Psat7g192440 Pisum sativum HOM05D000452 ORTHO05D005748 8.5e-100 367.9 312 58.3
Oeu037301.1 Olea europaea HOM05D000452 ORTHO05D005748 2.5e-99 366.3 327 55.4
unitig_736.g22410 Utricularia gibba HOM05D000452 ORTHO05D005748 4.7e-98 362.1 328 54.9
ATR0048G028 Amborella trichopoda HOM05D000452 ORTHO05D005748 8.0e-98 361.3 253 66.0
Aa31sc122G10 Aethionema arabicum HOM05D000452 ORTHO05D005748 1.8e-97 360.1 286 61.5
PGR102G2372 Punica granatum HOM05D000452 ORTHO05D005748 8.8e-97 357.8 321 55.8
TPR.G6153 Trifolium pratense HOM05D000452 ORTHO05D005748 1.5e-96 357.1 314 58.0
Dinv02128 Davidia involucrata HOM05D000452 ORTHO05D005748 4.8e-95 352.1 328 55.8
Ca_19270_v3 Cicer arietinum L. HOM05D000452 ORTHO05D005748 1.8e-94 350.1 324 55.6
BcaB03g13356 Brassica carinata HOM05D000452 ORTHO05D005748 5.3e-94 348.6 307 57.3
MBI07_g26020_MAGBIO Magnolia biondii HOM05D000452 ORTHO05D005748 9.4e-91 337.8 242 66.1
Lsat_1_v5_gn_9_37660 Lactuca sativa HOM05D000452 ORTHO05D005748 6.1e-90 335.1 321 54.2
RhsimUnG0046400 Rhododendron simsii HOM05D000452 ORTHO05D005748 3.7e-87 325.9 384 47.9
Lsat_1_v5_gn_2_91861 Lactuca sativa HOM05D000452 ORTHO05D005748 2.7e-85 319.7 312 52.9
PSO063G2649 Papaver somniferum HOM05D000452 ORTHO05D005748 4.5e-85 318.9 223 68.2
CiPaw.14G081900 Carya illinoinensis HOM05D000452 ORTHO05D005748 2.2e-84 316.6 320 52.2
Lsat_1_v5_gn_2_100281 Lactuca sativa HOM05D000452 ORTHO05D005748 1.1e-83 314.3 251 60.6
Pp3c16_24250 Physcomitrium patens HOM05D000452 ORTHO05D005748 9.8e-80 301.2 291 52.2
Mapoly0061s0093 Marchantia polymorpha HOM05D000452 ORTHO05D005748 7.0e-78 295.0 318 49.4
AagrBONN_evm.TU.Sc2ySwM_117.3844 Anthoceros agrestis HOM05D000452 ORTHO05D005748 1.0e-76 291.2 326 46.6
SHI19559 Sapria himalayana HOM05D000452 ORTHO05D005748 2.8e-74 283.1 226 59.7
CsaV3_1G013980 Cucumis sativus L. HOM05D000452 ORTHO05D005748 1.5e-72 277.3 315 47.0
Dinv01781 Davidia involucrata HOM05D000452 ORTHO05D005748 2.2e-71 273.5 201 64.7
Peaxi162Scf00034g00107 Petunia axillaris HOM05D000452 ORTHO05D005748 1.8e-70 270.4 299 48.8
SMO134G0053 Selaginella moellendorffii HOM05D000452 ORTHO05D005748 4.1e-70 269.2 318 45.0
Atru.chr3.3611 Acer truncatum HOM05D000452 ORTHO05D005748 2.7e-69 266.5 164 75.6
Os06g0158200 Oryza sativa ssp. japonica HOM05D000452 ORTHO05D005748 2.3e-68 263.5 192 66.7
SalBow3G4114 Salvia bowleyana HOM05D000452 ORTHO05D005748 2.9e-68 263.1 214 57.0
Oeu001281.1 Olea europaea HOM05D000452 ORTHO05D005748 4.7e-66 255.8 208 59.6
DCAR_018802 Daucus carota HOM05D000452 ORTHO05D005748 2.6e-64 250.0 212 55.2
Hund08167 Selenicereus undatus HOM05D000452 ORTHO05D005748 1.5e-59 234.2 185 61.6
CBR_g51944 Chara braunii HOM05D000452 ORTHO05D005748 8.0e-58 228.4 347 38.9
Lsat_1_v5_gn_5_88800 Lactuca sativa HOM05D000452 ORTHO05D005748 7.8e-45 185.3 196 52.0
Cre01.g022600 Chlamydomonas reinhardtii HOM05D000452 ORTHO05D005748 4.0e-41 172.9 311 34.1
TPR.G26833 Trifolium pratense HOM05D000452 ORTHO05D005748 8.9e-41 171.8 133 60.9
MBI10_g19822_MAGBIO Magnolia biondii HOM05D000452 ORTHO05D005748 4.9e-39 166.0 133 58.6
PRCOL_00001963 Prasinoderma coloniale HOM05D000452 ORTHO05D005748 8.7e-36 155.2 265 35.1
Lsat_1_v5_gn_3_50740 Lactuca sativa HOM05D000452 ORTHO05D005748 4.4e-32 142.9 128 56.2
Dinv32733 Davidia involucrata HOM05D000452 ORTHO05D005748 7.6e-32 142.1 114 57.9
C04p54260 Brassica napus HOM05D000452 ORTHO05D005748 3.3e-27 126.7 84 67.9
Hund08166 Selenicereus undatus HOM05D000452 ORTHO05D005748 9.0e-25 118.6 81 66.7
MD11G1150200 Malus domestica HOM05D000452 ORTHO05D005748 2.3e-20 104.0 81 60.5
BolC4t23229H Brassica oleracea HOM05D000452 ORTHO05D005748 1.1e-17 95.1 65 64.6
BcaC02g08433 Brassica carinata HOM05D000452 ORTHO05D005748 4.0e-17 93.2 64 64.1
BolC2t09709H Brassica oleracea HOM05D000452 ORTHO05D005748 5.3e-17 92.8 65 63.1
SHI19558 Sapria himalayana HOM05D000452 ORTHO05D000031 6.0e-13 79.3 66 56.1
C07p54990 Brassica napus HOM05D000452 ORTHO05D005748 3.9e-12 76.6 46 71.7
Lsat_1_v5_gn_4_22460 Lactuca sativa HOM05D000344 ORTHO05D005714 8.7e-12 75.5 57 63.2
PRCOL_00002815 Prasinoderma coloniale HOM05D000452 ORTHO05D333388 1.8e-09 67.8 179 30.2
BcaC02g07555 Brassica carinata HOM05D000452 ORTHO05D005748 1.3e-07 61.6 65 47.7


User provided reference genes

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