Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_008596 Vanilla planifolia HOM05D004101 ORTHO05D005221 0.0e+00 2106.6 1028 100.0
Os08g0110700 Oryza sativa ssp. japonica HOM05D004101 ORTHO05D005221 0.0e+00 1101.3 1023 57.3
HPP92_008552 Vanilla planifolia HOM05D004101 ORTHO05D005221 0.0e+00 1088.2 545 97.8
Nn5g27278 Nelumbo nucifera HOM05D004101 ORTHO05D005221 0.0e+00 1086.2 1064 55.5
Zm00001eb174090 Zea mays HOM05D004101 ORTHO05D005221 2.4e-310 1068.9 1042 54.8
QL09p002038 Quercus lobata HOM05D004101 ORTHO05D005221 4.1e-310 1068.1 1049 55.8
Aqoxy6G01398 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 3.4e-309 1065.1 1098 53.6
Aqoxy6G00101 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 3.8e-308 1061.6 1098 53.7
Thecc.08G177600 Theobroma cacao HOM05D004101 ORTHO05D005221 3.8e-308 1061.6 1047 55.2
Aqoxy2G02197 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 3.2e-307 1058.5 1100 53.3
CiPaw.03G015400 Carya illinoinensis HOM05D004101 ORTHO05D005221 3.2e-307 1058.5 1044 54.9
TAR625G0099 Trochodendron aralioides HOM05D004101 ORTHO05D005221 1.2e-306 1056.6 1058 55.2
Dinv05108 Davidia involucrata HOM05D004101 ORTHO05D005221 3.6e-306 1055.0 1061 54.1
GSVIVG01036377001 Vitis vinifera HOM05D004101 ORTHO05D005221 1.0e-305 1053.5 1051 53.8
Cfa008084 Carpinus fangiana HOM05D004101 ORTHO05D005221 1.8e-305 1052.7 1042 54.9
ATR1089G044 Amborella trichopoda HOM05D004101 ORTHO05D005221 8.8e-305 1050.4 1057 53.7
PGR042G3616 Punica granatum HOM05D004101 ORTHO05D005221 8.8e-305 1050.4 1057 54.1
TAR383G0434 Trochodendron aralioides HOM05D004101 ORTHO05D005221 9.7e-304 1047.0 1056 54.5
Glyma.09G234500 Glycine max HOM05D004101 ORTHO05D005221 1.3e-303 1046.6 1045 54.4
Gorai.009G267200 Gossypium raimondii HOM05D004101 ORTHO05D005221 2.2e-303 1045.8 1049 54.8
Zm00001eb260480 Zea mays HOM05D004101 ORTHO05D005221 2.2e-303 1045.8 1030 55.0
Phvul.011G002700 Phaseolus vulgaris HOM05D004101 ORTHO05D005221 2.4e-302 1042.3 1056 54.0
Gohir.A02G087700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 3.1e-302 1042.0 1048 54.3
Gohir.A05G253700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 3.1e-302 1042.0 1052 54.2
Ciclev10018750m.g Citrus clementina HOM05D004101 ORTHO05D005221 1.2e-301 1040.0 1043 54.4
Gorai.005G116600 Gossypium raimondii HOM05D004101 ORTHO05D005221 3.5e-301 1038.5 1048 54.2
arahy.Tifrunner.gnm1.ann1.BP0NKM Arachis hypogaea HOM05D004101 ORTHO05D005221 4.5e-301 1038.1 1064 53.6
Lj3g0009901 Lotus japonicus HOM05D004101 ORTHO05D005221 1.3e-300 1036.6 1035 54.0
Actinidia29382 Actinidia chinensis HOM05D004101 ORTHO05D005221 5.0e-300 1034.6 1064 53.0
Manes.18G117901 Manihot esculenta HOM05D004101 ORTHO05D005221 6.5e-300 1034.2 1063 53.9
Atru.chr13.2487 Acer truncatum HOM05D004101 ORTHO05D005221 8.5e-300 1033.9 1047 53.4
Ca_19680_v3 Cicer arietinum L. HOM05D004101 ORTHO05D005221 1.1e-299 1033.5 1036 54.7
Psat7g146680 Pisum sativum HOM05D004101 ORTHO05D005221 1.9e-299 1032.7 1035 54.6
VMungo1127G2207 Vigna mungo HOM05D004101 ORTHO05D005221 1.9e-299 1032.7 1053 54.0
Dinv36168 Davidia involucrata HOM05D004101 ORTHO05D005221 2.5e-299 1032.3 1063 53.4
TWI18G0503 Tripterygium wilfordii HOM05D004101 ORTHO05D005221 4.2e-299 1031.6 1043 54.6
Manes.02G221381 Manihot esculenta HOM05D004101 ORTHO05D005221 7.2e-299 1030.8 1048 54.6
CSS0023016 Camellia sinensis var. sinensis HOM05D004101 ORTHO05D005221 1.2e-298 1030.0 1066 53.1
Duzib177G1024 Durio zibethinus HOM05D004101 ORTHO05D005221 1.6e-298 1029.6 1095 52.4
Potri.013G099700 Populus trichocarpa HOM05D004101 ORTHO05D005221 4.7e-298 1028.1 1051 53.9
Lalb_Chr16g0391261 Lupinus albus HOM05D004101 ORTHO05D005221 5.2e-297 1024.6 1038 53.9
CSS0032109 Camellia sinensis var. sinensis HOM05D004101 ORTHO05D005221 4.4e-296 1021.5 1054 53.7
Prupe.1G442600 Prunus persica HOM05D004101 ORTHO05D005221 5.7e-296 1021.1 1060 53.7
CsaV3_2G033160 Cucumis sativus L. HOM05D004101 ORTHO05D005221 4.8e-295 1018.1 1046 53.7
TWI12G0255 Tripterygium wilfordii HOM05D004101 ORTHO05D005221 4.1e-294 1015.0 1050 54.3
EL10Ac1g01668 Beta vulgaris HOM05D004101 ORTHO05D005221 7.0e-294 1014.2 1046 53.3
PSO017G3151 Papaver somniferum HOM05D004101 ORTHO05D005221 1.6e-293 1013.1 1045 52.4
Potri.019G072300 Populus trichocarpa HOM05D004101 ORTHO05D005221 4.5e-293 1011.5 1042 53.3
Medtr4g033490 Medicago truncatula HOM05D004101 ORTHO05D005221 5.9e-293 1011.1 1028 54.0
Solyc01g008320.3 Solanum lycopersicum HOM05D004101 ORTHO05D005221 2.2e-292 1009.2 1052 52.3
CANSAT78G1092 Cannabis sativa HOM05D004101 ORTHO05D005221 2.9e-292 1008.8 1078 52.5
Oeu028926.1 Olea europaea HOM05D004101 ORTHO05D005221 3.8e-292 1008.4 1041 52.5
Sed0018643 Sechium edule HOM05D004101 ORTHO05D005221 5.0e-292 1008.1 1052 52.5
MSTRG.12725 Avicennia marina HOM05D004101 ORTHO05D005221 1.1e-291 1006.9 1051 52.6
RcHm_v2.0_Chr6g0306901 Rosa chinensis HOM05D004101 ORTHO05D005221 2.5e-291 1005.7 1032 53.4
AT1G31480 Arabidopsis thaliana HOM05D004101 ORTHO05D005221 9.4e-291 1003.8 1050 52.5
Sopen01g003840 Solanum pennellii HOM05D004101 ORTHO05D005221 2.7e-290 1002.3 1052 51.6
SalBow2G0849 Salvia bowleyana HOM05D004101 ORTHO05D005221 4.7e-290 1001.5 1073 52.8
ClCG11G008940 Citrullus lanatus HOM05D004101 ORTHO05D005221 8.0e-290 1000.7 1072 52.5
CARHR287040 Cardamine hirsuta HOM05D004101 ORTHO05D005221 1.4e-289 1000.0 1054 52.4
arahy.Tifrunner.gnm1.ann1.FM3HJM Arachis hypogaea HOM05D004101 ORTHO05D005221 3.0e-289 998.8 1153 49.3
Carub.0001s2990 Capsella rubella HOM05D004101 ORTHO05D005221 6.8e-289 997.7 1060 51.6
C05p30730 Brassica napus HOM05D004101 ORTHO05D005221 2.0e-288 996.1 1058 51.0
Aa31LG9G15840 Aethionema arabicum HOM05D004101 ORTHO05D005221 4.4e-288 995.0 1043 52.5
Sp1g27280 Schrenkiella parvula HOM05D004101 ORTHO05D005221 4.4e-288 995.0 1055 51.2
MD15G1088500 Malus domestica HOM05D004101 ORTHO05D005221 7.5e-288 994.2 1036 53.4
AL1G49570 Arabidopsis lyrata HOM05D004101 ORTHO05D005221 9.8e-288 993.8 1060 51.6
CANSAT21G1017 Cannabis sativa HOM05D004101 ORTHO05D005221 2.2e-287 992.6 1002 53.3
PSO170G4791 Papaver somniferum HOM05D004101 ORTHO05D005221 3.7e-287 991.9 1044 51.7
BcaC05g27176 Brassica carinata HOM05D004101 ORTHO05D005221 8.3e-287 990.7 1060 50.8
BolC5t31805H Brassica oleracea HOM05D004101 ORTHO05D005221 8.3e-287 990.7 1060 50.8
HanXRQChr03g0062111 Helianthus annuus HOM05D004101 ORTHO05D005221 1.4e-286 989.9 1026 53.7
BcaB07g32808 Brassica carinata HOM05D004101 ORTHO05D005221 1.8e-286 989.6 1052 50.7
Thhalv10006721m.g Eutrema salsugineum HOM05D004101 ORTHO05D005221 1.8e-286 989.6 1055 51.6
Aa31LG2G14460 Aethionema arabicum HOM05D004101 ORTHO05D005221 3.1e-286 988.8 1043 51.2
BraA09t39007Z Brassica rapa HOM05D004101 ORTHO05D005221 1.7e-284 983.0 1054 51.3
MD08G1108000 Malus domestica HOM05D004101 ORTHO05D005221 1.9e-283 979.5 1052 52.8
FvH4_2g35070 Fragaria vesca HOM05D004101 ORTHO05D005221 4.7e-282 974.9 1045 52.4
BraA08t33053Z Brassica rapa HOM05D004101 ORTHO05D005221 8.0e-282 974.2 1053 51.0
SGA_v2.0_scaffold158G37476 Striga asiatica HOM05D004101 ORTHO05D005221 8.0e-282 974.2 1078 50.2
A08p10530 Brassica napus HOM05D004101 ORTHO05D005221 1.4e-281 973.4 1054 51.0
SGA_v2.0_scaffold120G33012 Striga asiatica HOM05D004101 ORTHO05D005221 1.5e-280 969.9 1112 49.4
Eucgr.F02954 Eucalyptus grandis HOM05D004101 ORTHO05D005221 1.7e-279 966.5 1050 51.0
Gohir.D02G102700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 1.8e-278 963.0 972 54.2
BcaC07g37755 Brassica carinata HOM05D004101 ORTHO05D005221 5.4e-278 961.4 1053 50.3
BolC8t48140H Brassica oleracea HOM05D004101 ORTHO05D005221 5.4e-278 961.4 1053 50.3
ECA240G3381 Erigeron canadensis HOM05D004101 ORTHO05D005221 5.4e-278 961.4 1055 50.7
Migut.D00784 Erythranthe guttata HOM05D004101 ORTHO05D005221 4.5e-277 958.4 1048 51.2
CAN.G282.41 Capsicum annuum HOM05D004101 ORTHO05D005221 6.6e-276 954.5 1074 49.6
Cc10_g08720 Coffea canephora HOM05D004101 ORTHO05D005221 3.6e-274 948.7 1082 49.9
Sabra13G0085500 Salix brachista HOM05D004101 ORTHO05D005221 2.3e-273 946.0 1129 48.5
DCAR_019079 Daucus carota HOM05D004101 ORTHO05D005221 3.0e-273 945.7 1164 47.2
FAN27G2707 Fragaria x ananassa HOM05D004101 ORTHO05D005221 8.9e-273 944.1 1052 51.1
PSO017G5679 Papaver somniferum HOM05D004101 ORTHO05D005221 2.0e-272 943.0 999 52.6
ECA234G0584 Erigeron canadensis HOM05D004101 ORTHO05D005221 9.8e-272 940.6 1048 49.6
Haze_13953 Corylus avellana HOM05D004101 ORTHO05D005221 2.2e-271 939.5 1140 48.0
PSO170G4509 Papaver somniferum HOM05D004101 ORTHO05D005221 2.9e-271 939.1 1025 51.1
FAN20G0554 Fragaria x ananassa HOM05D004101 ORTHO05D005221 3.5e-269 932.2 1010 52.0
Lj9A698G58 Lonicera japonica HOM05D004101 ORTHO05D005221 1.5e-267 926.8 1047 51.4
Hund26650 Selenicereus undatus HOM05D004101 ORTHO05D005221 5.6e-267 924.9 1270 45.0
Lsat_1_v5_gn_7_42860 Lactuca sativa HOM05D004101 ORTHO05D005221 6.8e-265 917.9 1031 50.3
COL.COLO4_06914 Corchorus olitorius HOM05D004101 ORTHO05D005221 5.8e-264 914.8 970 53.3
Peaxi162Scf00021g02415 Petunia axillaris HOM05D004101 ORTHO05D005221 1.9e-262 909.8 1048 50.0
Nitab4.5_0000069g0130 Nicotiana tabacum HOM05D004101 ORTHO05D005221 5.4e-262 908.3 986 52.0
Atru.chr13.2489 Acer truncatum HOM05D004101 ORTHO05D005221 1.5e-259 900.2 1053 48.1
Sabra19G0083800 Salix brachista HOM05D004101 ORTHO05D005221 1.9e-259 899.8 1153 46.8
AUR62034351 Chenopodium quinoa HOM05D004101 ORTHO05D005221 2.8e-258 896.0 1069 47.9
AUR62022357 Chenopodium quinoa HOM05D004101 ORTHO05D005221 6.8e-257 891.3 1063 48.4
MELO3C008088.2 Cucumis melo HOM05D004101 ORTHO05D005221 8.9e-257 891.0 973 51.9
Atru.chr13.2501 Acer truncatum HOM05D004101 ORTHO05D005221 8.9e-249 864.4 922 51.3
FAN15G3699 Fragaria x ananassa HOM05D004101 ORTHO05D005221 2.9e-247 859.4 1018 48.5
Sc26g0002190 Simmondsia chinensis HOM05D004101 ORTHO05D005221 8.4e-247 857.8 925 51.5
Mapoly0151s0040 Marchantia polymorpha HOM05D004101 ORTHO05D005221 1.2e-229 800.8 1036 44.4
THA.LOC104812717 Tarenaya hassleriana HOM05D004101 ORTHO05D005221 1.6e-229 800.4 895 51.6
AagrBONN_evm.TU.Sc2ySwM_228.4088 Anthoceros agrestis HOM05D004101 ORTHO05D005221 3.7e-226 789.3 1009 43.4
SMO200G0043 Selaginella moellendorffii HOM05D004101 ORTHO05D005221 9.0e-225 784.6 961 46.3
Ah.07g205660 Amaranthus hybridus HOM05D004101 ORTHO05D005221 1.3e-223 780.8 1052 45.2
Pp3c3_10170 Physcomitrium patens HOM05D004101 ORTHO05D005221 8.4e-215 751.5 1165 39.7
unitig_8.g3682 Utricularia gibba HOM05D004101 ORTHO05D005221 2.3e-212 743.4 1038 42.7
BcaB04g18153 Brassica carinata HOM05D004101 ORTHO05D005221 1.1e-209 734.6 879 47.2
Gohir.D05G255640 Gossypium hirsutum HOM05D004101 ORTHO05D005221 7.6e-208 728.4 799 52.9
CDE02G0702 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 1.0e-183 648.3 782 49.0
Nitab4.5_0009427g0010 Nicotiana tabacum HOM05D004101 ORTHO05D005221 4.7e-181 639.4 840 45.8
TPR.G31924 Trifolium pratense HOM05D004101 ORTHO05D005221 1.4e-177 627.9 655 54.2
HPP92_008553 Vanilla planifolia HOM05D004101 ORTHO05D005221 1.6e-176 624.4 293 99.7
A09p34710 Brassica napus HOM05D004101 ORTHO05D005221 4.2e-166 589.7 744 46.6
Migut.N00698 Erythranthe guttata HOM05D004101 ORTHO05D005221 6.8e-164 582.4 506 60.7
Rhsim08G0116000 Rhododendron simsii HOM05D004101 ORTHO05D005221 8.0e-157 558.9 837 43.5
vmacro17837 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 1.2e-141 508.4 470 58.1
vmacro14428 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 1.5e-134 485.0 452 56.9
Lj2A387T50 Lonicera japonica HOM05D004101 ORTHO05D005221 8.9e-132 475.7 478 53.8
Cpa.g.sc24.82 Carica papaya HOM05D004101 ORTHO05D005221 5.8e-123 446.4 514 52.1
Lj2A387G43 Lonicera japonica HOM05D004101 ORTHO05D005221 1.6e-112 411.8 592 44.4
Oeu006618.1 Olea europaea HOM05D004101 ORTHO05D005221 4.3e-110 403.7 314 64.6
vmacro17836 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 9.6e-110 402.5 742 36.4
Lsat_1_v5_gn_5_98501 Lactuca sativa HOM05D004101 ORTHO05D007752 4.2e-105 387.1 285 65.6
Gohir.D05G255660 Gossypium hirsutum HOM05D004101 ORTHO05D005221 1.1e-102 379.0 363 54.3
Migut.N00699 Erythranthe guttata HOM05D004101 ORTHO05D005221 2.1e-96 358.2 278 60.1
CBR_g19663 Chara braunii HOM05D004101 ORTHO05D005221 8.5e-90 336.3 445 45.8
Cpa.g.sc24.85 Carica papaya HOM05D004101 ORTHO05D005221 1.7e-85 322.0 205 73.7
BcaB04g18154 Brassica carinata HOM05D004101 ORTHO05D005221 1.4e-55 222.6 153 69.9
CDE02G4445 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 1.6e-51 209.1 211 50.2
A09p34730 Brassica napus HOM05D004101 ORTHO05D005221 6.8e-47 193.7 111 80.2
vmacro14430 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 3.2e-44 184.9 139 61.9
QL93p1879_0034 Quercus lobata HOM05D004101 ORTHO05D005221 1.1e-33 149.8 130 58.5
SEGI_28351 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 6.2e-32 144.1 94 72.3
Aqoxy2G00645 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 1.8e-31 142.5 160 47.5
PSO017G1167 Papaver somniferum HOM05D004101 ORTHO05D005221 6.4e-29 134.0 109 57.8
SEGI_38945 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 1.5e-22 112.8 86 62.8
SEGI_18218 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 1.7e-18 99.4 57 82.5
vmacro14429 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 5.1e-18 97.8 305 33.1
BolC1t03898H Brassica oleracea HOM05D010251 ORTHO05D005221 1.4e-15 89.7 172 35.5
SMO200G0098 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 1.5e-14 86.3 80 60.0
Medtr5g080490 Medicago truncatula HOM05D004101 ORTHO05D005221 7.6e-14 84.0 61 63.9
COL.COLO4_06915 Corchorus olitorius HOM05D004101 ORTHO05D005221 1.3e-13 83.2 47 80.9
SHI03798 Sapria himalayana HOM05D004101 ORTHO05D005221 3.8e-13 81.6 107 43.9
Os07g0406600 Oryza sativa ssp. japonica HOM05D004101 ORTHO05D005221 4.2e-12 78.2 50 68.0
Pp3c3_10160 Physcomitrium patens HOM05D004101 ORTHO05D005221 5.4e-12 77.8 155 33.5
Cpa.g.sc24.79 Carica papaya HOM05D004101 ORTHO05D005221 1.3e-10 73.2 66 54.5
CDE08G1083 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 5.1e-10 71.2 69 52.2
SMO200G0135 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 1.5e-09 69.7 53 66.0
SMO209G0008 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 4.8e-08 64.7 52 63.5
BolC2t10203H Brassica oleracea HOM05D004101 ORTHO05D027158 2.4e-07 62.4 53 52.8
BolC2t10210H Brassica oleracea HOM05D004101 ORTHO05D027158 2.4e-07 62.4 53 52.8
VMungo0251G0072 Vigna mungo HOM05D004101 ORTHO05D005221 6.9e-07 60.8 35 65.7
A01p24750 Brassica napus HOM05D004101 ORTHO05D027158 3.4e-06 58.5 53 50.9
Dinv40986 Davidia involucrata HOM05D003659 ORTHO05D004298 4.4e-06 58.2 77 48.1


User provided reference genes

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