Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_008573 Vanilla planifolia HOM05D003933 ORTHO05D004746 1.7e-193 679.1 331 100.0
TAR629G2222 Trochodendron aralioides HOM05D003933 ORTHO05D004746 5.4e-123 444.9 328 66.2
Duzib132G1110 Durio zibethinus HOM05D003933 ORTHO05D004746 1.1e-120 437.2 326 66.9
Duzib277G0001 Durio zibethinus HOM05D003933 ORTHO05D004746 1.3e-119 433.7 326 66.3
Aqoxy5G00269 Aquilegia oxysepala HOM05D003933 ORTHO05D004746 2.4e-118 429.5 328 61.9
Os02g0634600 Oryza sativa ssp. japonica HOM05D003933 ORTHO05D004746 7.6e-117 424.5 334 61.4
Thecc.02G159300 Theobroma cacao HOM05D003933 ORTHO05D004746 4.9e-116 421.8 326 63.2
ClCG10G012050 Citrullus lanatus HOM05D003933 ORTHO05D004746 2.4e-115 419.5 328 62.5
DCAR_007284 Daucus carota HOM05D003933 ORTHO05D004746 2.4e-115 419.5 328 61.9
Hund08600 Selenicereus undatus HOM05D003933 ORTHO05D004746 3.2e-115 419.1 328 61.0
COL.COLO4_08591 Corchorus olitorius HOM05D003933 ORTHO05D004746 7.1e-115 417.9 326 63.5
Ciclev10031732m.g Citrus clementina HOM05D003933 ORTHO05D004746 4.6e-114 415.2 326 62.6
Migut.L00761 Erythranthe guttata HOM05D003933 ORTHO05D004746 7.9e-114 414.5 334 61.4
Gorai.013G069800 Gossypium raimondii HOM05D003933 ORTHO05D004746 1.0e-113 414.1 326 63.5
Potri.005G092000 Populus trichocarpa HOM05D003933 ORTHO05D004746 1.0e-113 414.1 328 61.9
Lj6A748G52 Lonicera japonica HOM05D003933 ORTHO05D004746 1.3e-113 413.7 325 62.5
AUR62032977 Chenopodium quinoa HOM05D003933 ORTHO05D004746 1.8e-113 413.3 340 60.3
PSO063G7666 Papaver somniferum HOM05D003933 ORTHO05D004746 3.0e-113 412.5 328 61.3
Cfa008748 Carpinus fangiana HOM05D003933 ORTHO05D004746 5.1e-113 411.8 329 63.2
PSO782G2797 Papaver somniferum HOM05D003933 ORTHO05D004746 6.7e-113 411.4 328 61.3
Gohir.A13G060600 Gossypium hirsutum HOM05D003933 ORTHO05D004746 8.7e-113 411.0 326 63.5
QL05p009967 Quercus lobata HOM05D003933 ORTHO05D004746 8.7e-113 411.0 330 61.8
Prupe.1G348200 Prunus persica HOM05D003933 ORTHO05D004746 1.1e-112 410.6 328 61.0
HanXRQChr12g0377651 Helianthus annuus HOM05D003933 ORTHO05D004746 2.5e-112 409.5 329 61.4
Atru.chr11.1157 Acer truncatum HOM05D003933 ORTHO05D004746 3.3e-112 409.1 328 61.9
PGSC0003DMG402011550 Solanum tuberosum HOM05D003933 ORTHO05D004746 3.3e-112 409.1 328 62.2
PGR142G4240 Punica granatum HOM05D003933 ORTHO05D004746 4.3e-112 408.7 331 61.3
MD13G1004400 Malus domestica HOM05D003933 ORTHO05D004746 7.4e-112 407.9 328 60.4
Gohir.D13G061300 Gossypium hirsutum HOM05D003933 ORTHO05D004746 9.6e-112 407.5 326 62.3
Nitab4.5_0003643g0030 Nicotiana tabacum HOM05D003933 ORTHO05D004746 1.3e-111 407.1 332 61.1
RcHm_v2.0_Chr4g0446781 Rosa chinensis HOM05D003933 ORTHO05D004746 1.3e-111 407.1 329 60.8
TWI77G0671 Tripterygium wilfordii HOM05D003933 ORTHO05D004746 1.6e-111 406.8 332 62.3
EL10Ac9g22955 Beta vulgaris HOM05D003933 ORTHO05D004746 2.8e-111 406.0 333 59.2
Lsat_1_v5_gn_4_15060 Lactuca sativa HOM05D003933 ORTHO05D004746 2.8e-111 406.0 337 61.7
Solyc12g088450.3 Solanum lycopersicum HOM05D003933 ORTHO05D004746 3.7e-111 405.6 328 61.3
Carub.0006s2098 Capsella rubella HOM05D003933 ORTHO05D004746 4.8e-111 405.2 327 59.6
Thhalv10004353m.g Eutrema salsugineum HOM05D003933 ORTHO05D004746 4.8e-111 405.2 327 59.6
CSS0045284 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 6.2e-111 404.8 329 61.1
CAN.G107.7 Capsicum annuum HOM05D003933 ORTHO05D004746 8.1e-111 404.4 328 61.3
Duzib248G0690 Durio zibethinus HOM05D003933 ORTHO05D004746 8.1e-111 404.4 326 61.0
Aa31LG3G18300 Aethionema arabicum HOM05D003933 ORTHO05D004746 1.8e-110 403.3 331 60.1
Sed0001276 Sechium edule HOM05D003933 ORTHO05D004746 1.8e-110 403.3 321 60.4
Cc11_g08880 Coffea canephora HOM05D003933 ORTHO05D004746 3.1e-110 402.5 330 60.9
Eucgr.J00872 Eucalyptus grandis HOM05D003933 ORTHO05D004746 3.1e-110 402.5 329 59.6
THA.LOC104800863 Tarenaya hassleriana HOM05D003933 ORTHO05D004746 3.1e-110 402.5 331 59.2
Actinidia14952 Actinidia chinensis HOM05D003933 ORTHO05D004746 6.9e-110 401.4 330 60.6
ECA234G4145 Erigeron canadensis HOM05D003933 ORTHO05D004746 6.9e-110 401.4 327 59.3
Manes.09G017800 Manihot esculenta HOM05D003933 ORTHO05D004746 2.0e-109 399.8 328 60.4
C07p44350 Brassica napus HOM05D003933 ORTHO05D004746 2.6e-109 399.4 327 57.2
BolC7t44956H Brassica oleracea HOM05D003933 ORTHO05D004746 2.6e-109 399.4 327 57.2
Manes.08G053300 Manihot esculenta HOM05D003933 ORTHO05D004746 2.6e-109 399.4 327 60.2
Phvul.003G004900 Phaseolus vulgaris HOM05D003933 ORTHO05D004746 2.6e-109 399.4 330 60.6
AT5G23200 Arabidopsis thaliana HOM05D003933 ORTHO05D004746 4.5e-109 398.7 331 58.9
Nitab4.5_0000569g0090 Nicotiana tabacum HOM05D003933 ORTHO05D004746 5.8e-109 398.3 330 59.4
FAN07G0849 Fragaria x ananassa HOM05D003933 ORTHO05D004746 2.9e-108 396.0 330 59.1
AL6G34400 Arabidopsis lyrata HOM05D003933 ORTHO05D004746 3.8e-108 395.6 327 58.1
FvH4_4g36990 Fragaria vesca HOM05D003933 ORTHO05D004746 3.8e-108 395.6 330 59.4
SalBow8G0218 Salvia bowleyana HOM05D003933 ORTHO05D004746 3.8e-108 395.6 331 58.6
MSTRG.890 Avicennia marina HOM05D003933 ORTHO05D004746 1.1e-107 394.0 346 59.0
CSS0043425 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 1.9e-107 393.3 329 59.9
CARHR190340 Cardamine hirsuta HOM05D003933 ORTHO05D004746 2.5e-107 392.9 332 57.8
SGA_v2.0_scaffold38G15064 Striga asiatica HOM05D003933 ORTHO05D004746 3.2e-107 392.5 330 59.4
Medtr1g037570 Medicago truncatula HOM05D003933 ORTHO05D004746 4.2e-107 392.1 328 59.8
Psat6g135760 Pisum sativum HOM05D003933 ORTHO05D004746 4.2e-107 392.1 328 60.1
CsaV3_3G031790 Cucumis sativus L. HOM05D003933 ORTHO05D004746 5.5e-107 391.7 330 59.7
BraA03t13757Z Brassica rapa HOM05D003933 ORTHO05D004746 7.1e-107 391.3 331 56.8
Lalb_Chr10g0094951 Lupinus albus HOM05D003933 ORTHO05D004746 7.1e-107 391.3 328 58.2
Rhsim09G0099700 Rhododendron simsii HOM05D003933 ORTHO05D004746 2.7e-106 389.4 329 59.6
Glyma.09G282800 Glycine max HOM05D003933 ORTHO05D004746 4.6e-106 388.7 330 59.7
Sp2g23940 Schrenkiella parvula HOM05D003933 ORTHO05D004746 4.6e-106 388.7 327 57.2
A03p46330 Brassica napus HOM05D003933 ORTHO05D004746 7.9e-106 387.9 331 56.2
Ca_07914_v3 Cicer arietinum L. HOM05D003933 ORTHO05D004746 1.8e-105 386.7 319 60.2
TPR.G29790 Trifolium pratense HOM05D003933 ORTHO05D004746 1.8e-105 386.7 328 58.8
CAN.G1054.19 Capsicum annuum HOM05D003933 ORTHO05D004746 3.0e-105 386.0 328 58.8
Nitab4.5_0000934g0120 Nicotiana tabacum HOM05D003933 ORTHO05D004746 3.0e-105 386.0 330 60.9
arahy.Tifrunner.gnm1.ann1.2XRJ77 Arachis hypogaea HOM05D003933 ORTHO05D004746 6.7e-105 384.8 328 57.6
Peaxi162Scf00081g01011 Petunia axillaris HOM05D003933 ORTHO05D004746 6.7e-105 384.8 328 59.1
CANSAT78G0638 Cannabis sativa HOM05D003933 ORTHO05D004746 8.7e-105 384.4 331 58.0
arahy.Tifrunner.gnm1.ann1.J5HH0A Arachis hypogaea HOM05D003933 ORTHO05D004746 1.5e-104 383.6 328 57.6
Lj2g0026122 Lotus japonicus HOM05D003933 ORTHO05D004746 5.7e-104 381.7 328 57.9
Hma1.2p1_0933F.1_g238310 Hydrangea macrophylla HOM05D003933 ORTHO05D004746 7.4e-104 381.3 359 56.8
Hma1.2p1_2428F.1_g321995 Hydrangea macrophylla HOM05D003933 ORTHO05D004746 7.4e-104 381.3 359 56.8
vmacro10631 Vaccinium macrocarpon HOM05D003933 ORTHO05D004746 2.1e-103 379.8 375 53.9
ATR0618G423 Amborella trichopoda HOM05D003933 ORTHO05D004746 6.3e-103 378.3 331 57.4
VMungo0251G2024 Vigna mungo HOM05D003933 ORTHO05D004746 1.4e-102 377.1 353 55.5
MELO3C024011.2 Cucumis melo HOM05D003933 ORTHO05D004746 1.8e-102 376.7 328 58.2
Nitab4.5_0004707g0060 Nicotiana tabacum HOM05D003933 ORTHO05D004746 1.5e-101 373.6 322 60.6
PGSC0003DMG400021516 Solanum tuberosum HOM05D003933 ORTHO05D004746 3.8e-100 369.0 328 58.2
vmacro10628 Vaccinium macrocarpon HOM05D003933 ORTHO05D004746 1.9e-99 366.7 376 52.1
AL6G18670 Arabidopsis lyrata HOM05D003933 ORTHO05D004746 3.2e-99 365.9 326 55.8
Cpa.g.sc0.130 Carica papaya HOM05D003933 ORTHO05D004746 2.7e-98 362.8 402 49.0
Solyc04g078160.4 Solanum lycopersicum HOM05D003933 ORTHO05D004746 4.6e-98 362.1 340 55.3
Haze_11764 Corylus avellana HOM05D003933 ORTHO05D004746 7.9e-98 361.3 352 55.4
Sopen04g031790 Solanum pennellii HOM05D003933 ORTHO05D004746 6.7e-97 358.2 349 55.3
Sp6g34690 Schrenkiella parvula HOM05D003933 ORTHO05D004746 1.3e-95 354.0 334 53.0
Lj3g0018867 Lotus japonicus HOM05D003933 ORTHO05D004746 6.3e-95 351.7 328 56.1
AT5G08270 Arabidopsis thaliana HOM05D003933 ORTHO05D004746 4.1e-94 349.0 329 53.8
unitig_26.g10014 Utricularia gibba HOM05D003933 ORTHO05D004746 4.1e-94 349.0 323 57.3
Glyma.11G100000 Glycine max HOM05D003933 ORTHO05D004746 5.3e-94 348.6 330 56.7
Gohir.A03G165000 Gossypium hirsutum HOM05D003933 ORTHO05D004746 5.3e-94 348.6 325 54.5
CANSAT11G2660 Cannabis sativa HOM05D003933 ORTHO05D004746 9.0e-94 347.8 326 54.6
Lj3g0001561 Lotus japonicus HOM05D003933 ORTHO05D004746 1.5e-93 347.1 328 55.5
Gohir.D02G188200 Gossypium hirsutum HOM05D003933 ORTHO05D004746 7.7e-93 344.7 325 54.8
Gorai.005G210900 Gossypium raimondii HOM05D003933 ORTHO05D004746 1.0e-92 344.4 325 54.8
Thhalv10013838m.g Eutrema salsugineum HOM05D003933 ORTHO05D004746 1.7e-92 343.6 329 52.0
Potri.005G092100 Populus trichocarpa HOM05D003933 ORTHO05D004746 1.7e-92 343.6 328 54.0
arahy.Tifrunner.gnm1.ann1.E3G1QY Arachis hypogaea HOM05D003933 ORTHO05D004746 2.2e-92 343.2 328 55.2
Peaxi162Scf00160g00123 Petunia axillaris HOM05D003933 ORTHO05D004746 2.2e-92 343.2 289 59.5
arahy.Tifrunner.gnm1.ann1.3AB2AC Arachis hypogaea HOM05D003933 ORTHO05D004746 1.4e-91 340.5 328 54.3
FAN12G2057 Fragaria x ananassa HOM05D003933 ORTHO05D004746 4.2e-91 339.0 301 56.8
DCAR_030211 Daucus carota HOM05D003933 ORTHO05D004746 1.2e-90 337.4 286 58.4
Sabra05G0076300 Salix brachista HOM05D003933 ORTHO05D004746 6.7e-89 331.6 271 60.1
Medtr4g075120 Medicago truncatula HOM05D003933 ORTHO05D004746 1.5e-88 330.5 333 54.7
BcaB08g37269 Brassica carinata HOM05D003933 ORTHO05D004746 5.7e-88 328.6 333 51.7
Ca_19016_v3 Cicer arietinum L. HOM05D003933 ORTHO05D004746 6.3e-87 325.1 329 53.2
CiPaw.06G061200 Carya illinoinensis HOM05D003933 ORTHO05D004746 2.0e-85 320.1 270 59.6
MBI06_g23608_MAGBIO Magnolia biondii HOM05D003933 ORTHO05D004746 5.9e-85 318.5 292 54.8
VMungo1127G0010 Vigna mungo HOM05D003933 ORTHO05D004746 3.8e-84 315.8 320 53.1
BolC9t59613H Brassica oleracea HOM05D003933 ORTHO05D004746 5.0e-84 315.5 323 50.8
Dinv17619 Davidia involucrata HOM05D003933 ORTHO05D004746 1.9e-83 313.5 240 65.0
C09p68670 Brassica napus HOM05D003933 ORTHO05D004746 1.6e-82 310.5 323 49.5
A10p28410 Brassica napus HOM05D003933 ORTHO05D004746 2.7e-82 309.7 324 49.4
FAN17G2963 Fragaria x ananassa HOM05D003933 ORTHO05D004746 2.7e-82 309.7 269 56.9
BraA10t44888Z Brassica rapa HOM05D003933 ORTHO05D004746 3.6e-82 309.3 324 49.4
Lalb_Chr19g0139431 Lupinus albus HOM05D003933 ORTHO05D004746 3.6e-82 309.3 331 51.1
Carub.0006s0715 Capsella rubella HOM05D003933 ORTHO05D004746 5.1e-81 305.4 286 53.1
MBI06_g32507_MAGBIO Magnolia biondii HOM05D003933 ORTHO05D004746 5.1e-81 305.4 245 58.4
Zm00001eb248160 Zea mays HOM05D003933 ORTHO05D004746 7.0e-78 295.0 246 58.1
GSVIVG01026245001 Vitis vinifera HOM05D003933 ORTHO05D004746 1.8e-73 280.4 217 65.0
SEGI_04055 Sequoiadendron giganteum HOM05D003933 ORTHO05D004746 1.4e-70 270.8 308 46.8
TPR.G25000 Trifolium pratense HOM05D003933 ORTHO05D004746 5.0e-68 262.3 285 50.2
Lj3g0003114 Lotus japonicus HOM05D003933 ORTHO05D004746 6.5e-68 261.9 287 50.9
Lj3g0021014 Lotus japonicus HOM05D003933 ORTHO05D004746 6.5e-68 261.9 287 50.9
Lj3g0017683 Lotus japonicus HOM05D003933 ORTHO05D004746 1.5e-67 260.8 287 50.5
Pp3c10_5850 Physcomitrium patens HOM05D003933 ORTHO05D004746 8.3e-63 245.0 311 41.5
Sed0007936 Sechium edule HOM05D003933 ORTHO05D004746 1.1e-62 244.6 279 48.4
Sopen12g030430 Solanum pennellii HOM05D003933 ORTHO05D004746 1.8e-62 243.8 175 65.7
Mapoly0072s0109 Marchantia polymorpha HOM05D003933 ORTHO05D004746 2.4e-62 243.4 311 39.5
SMO364G0332 Selaginella moellendorffii HOM05D003933 ORTHO05D004746 2.7e-61 240.0 315 41.9
Ca_20843_v3 Cicer arietinum L. HOM05D003933 ORTHO05D004746 3.8e-60 236.1 265 47.9
AagrBONN_evm.TU.Sc2ySwM_117.4016 Anthoceros agrestis HOM05D003933 ORTHO05D004746 1.9e-59 233.8 320 39.4
Psat7g177760 Pisum sativum HOM05D003933 ORTHO05D004746 2.5e-59 233.4 267 48.3
CSS0013970 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 8.8e-57 224.9 195 55.9
CSS0027256 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 5.7e-56 222.2 200 52.5
CSS0006186 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 1.7e-55 220.7 185 57.3
CARHR204870 Cardamine hirsuta HOM05D003933 ORTHO05D004746 2.8e-55 219.9 194 54.1
CSS0049411 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 4.9e-55 219.2 168 60.1
PGSC0003DMG400011553 Solanum tuberosum HOM05D003933 ORTHO05D004746 4.5e-53 212.6 157 64.3
CDE08G0738 Ceratophyllum demersum HOM05D003933 ORTHO05D004746 5.6e-51 205.7 175 57.1
CBR_g6576 Chara braunii HOM05D003933 ORTHO05D004746 1.4e-41 174.5 342 33.9
Nn7g37760 Nelumbo nucifera HOM05D003933 ORTHO05D004746 1.1e-38 164.9 151 58.3
MD16G1003200 Malus domestica HOM05D003933 ORTHO05D004746 9.2e-38 161.8 308 36.4
Sc10g0005100 Simmondsia chinensis HOM05D003933 ORTHO05D004746 1.6e-37 161.0 130 61.5
Oeu044350.1 Olea europaea HOM05D003933 ORTHO05D004746 3.9e-36 156.4 127 64.6
Sc10g0005110 Simmondsia chinensis HOM05D003933 ORTHO05D004746 1.6e-34 151.0 115 59.1
CDE08G1244 Ceratophyllum demersum HOM05D003933 ORTHO05D004746 2.1e-34 150.6 129 59.7
COL.COLO4_20883 Corchorus olitorius HOM05D003933 ORTHO05D004746 4.6e-29 132.9 99 63.6
SHI31071 Sapria himalayana HOM05D003933 ORTHO05D004746 3.9e-28 129.8 154 48.1
MCO06G263 Micromonas commoda HOM05D003933 ORTHO05D004746 1.1e-22 111.7 340 28.5
Cre02.g086076 Chlamydomonas reinhardtii HOM05D003933 ORTHO05D004746 2.4e-22 110.5 348 25.0
BcaC03g18034 Brassica carinata HOM05D003933 ORTHO05D004746 6.0e-21 105.9 233 31.8
C06p10890 Brassica napus HOM05D003933 ORTHO05D004746 4.3e-19 99.8 92 48.9
C02p60970 Brassica napus HOM05D003933 ORTHO05D004746 7.3e-19 99.0 76 56.6
A02p41110 Brassica napus HOM05D003933 ORTHO05D004746 2.1e-18 97.4 169 36.1
MBI06_g42297_MAGBIO Magnolia biondii HOM05D003933 ORTHO05D004746 5.2e-17 92.8 106 51.9
SEGI_32331 Sequoiadendron giganteum HOM05D003933 ORTHO05D004746 3.8e-15 86.7 106 45.3
CARHR204860 Cardamine hirsuta HOM05D003933 ORTHO05D004746 2.7e-13 80.5 56 66.1
Psat7g177720 Pisum sativum HOM05D003933 ORTHO05D004746 1.1e-09 68.6 44 75.0
PGSC0003DMG401019957 Solanum tuberosum HOM05D003933 ORTHO05D004746 3.4e-08 63.5 67 49.3
COL.COLO4_20881 Corchorus olitorius HOM05D003933 ORTHO05D004746 1.7e-07 61.2 56 55.4


User provided reference genes

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