Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_008568 Vanilla planifolia HOM05D006954 ORTHO05D008729 1.3e-268 929.1 463 100.0
Haze_02712 Corylus avellana HOM05D006954 ORTHO05D008729 1.2e-32 145.2 359 35.1
Zm00001eb023500 Zea mays HOM05D006954 ORTHO05D008729 1.1e-31 142.1 390 31.3
Zm00001eb391500 Zea mays HOM05D006954 ORTHO05D008729 1.4e-31 141.7 308 31.8
Thecc.01G384400 Theobroma cacao HOM05D006954 ORTHO05D008729 6.8e-31 139.4 340 35.3
CiPaw.14G025200 Carya illinoinensis HOM05D006954 ORTHO05D008729 2.0e-30 137.9 337 33.2
Dinv21639 Davidia involucrata HOM05D006954 ORTHO05D008729 2.0e-30 137.9 404 33.4
Dinv43668 Davidia involucrata HOM05D006954 ORTHO05D008729 3.4e-30 137.1 310 36.1
Cfa011147 Carpinus fangiana HOM05D001088 ORTHO05D002099 1.7e-29 134.8 337 34.4
TAR375G0455 Trochodendron aralioides HOM05D006954 ORTHO05D008729 3.8e-29 133.7 399 32.1
TAR375G1092 Trochodendron aralioides HOM05D006954 ORTHO05D008729 3.8e-29 133.7 399 32.1
Manes.01G080700 Manihot esculenta HOM05D006954 ORTHO05D008729 6.4e-29 132.9 359 34.0
Aqoxy7G00762 Aquilegia oxysepala HOM05D006954 ORTHO05D008729 2.4e-28 131.0 319 35.1
QL12p012133 Quercus lobata HOM05D006954 ORTHO05D008729 1.6e-27 128.3 324 33.6
MD02G1210900 Malus domestica HOM05D006954 ORTHO05D008729 2.7e-27 127.5 399 29.8
Gohir.A07G147000 Gossypium hirsutum HOM05D006954 ORTHO05D008729 4.6e-27 126.7 392 30.1
QL04p036098 Quercus lobata HOM05D006954 ORTHO05D008729 7.8e-27 125.9 330 33.6
Lj8P262T33 Lonicera japonica HOM05D006954 ORTHO05D008729 1.0e-26 125.6 324 32.1
PGSC0003DMG400026019 Solanum tuberosum HOM05D006954 ORTHO05D008729 1.0e-26 125.6 307 29.3
PSO017G4363 Papaver somniferum HOM05D006954 ORTHO05D008729 1.3e-26 125.2 391 29.4
Duzib133G0753 Durio zibethinus HOM05D006954 ORTHO05D008729 2.3e-26 124.4 327 33.0
Gohir.D07G153000 Gossypium hirsutum HOM05D006954 ORTHO05D008729 2.3e-26 124.4 393 30.0
FAN01G1544 Fragaria x ananassa HOM05D006954 ORTHO05D008729 3.0e-26 124.0 341 33.7
Lj6C70T9 Lonicera japonica HOM05D006954 ORTHO05D008729 3.0e-26 124.0 352 31.5
Rhsim07G0108500 Rhododendron simsii HOM05D001088 ORTHO05D002099 3.9e-26 123.6 372 32.8
vmacro14083 Vaccinium macrocarpon HOM05D006954 ORTHO05D008729 3.9e-26 123.6 380 31.3
GSVIVG01018156001 Vitis vinifera HOM05D006638 ORTHO05D008246 3.9e-26 123.6 240 36.7
PSO170G0413 Papaver somniferum HOM05D006954 ORTHO05D008729 5.1e-26 123.2 383 30.8
TWI59G0609 Tripterygium wilfordii HOM05D006954 ORTHO05D008729 6.6e-26 122.9 329 33.4
Gorai.001G175100 Gossypium raimondii HOM05D006954 ORTHO05D008729 8.6e-26 122.5 402 29.1
FAN06G1022 Fragaria x ananassa HOM05D006954 ORTHO05D008729 1.1e-25 122.1 346 32.1
FAN10G2562 Fragaria x ananassa HOM05D006954 ORTHO05D008729 1.1e-25 122.1 346 32.9
Atru.chr5.233 Acer truncatum HOM05D006954 ORTHO05D008729 1.5e-25 121.7 261 35.2
QL04p036667 Quercus lobata HOM05D006954 ORTHO05D008729 1.5e-25 121.7 327 33.0
Solyc01g090850.3 Solanum lycopersicum HOM05D006954 ORTHO05D008729 3.3e-25 120.6 295 30.2
Sopen01g036590 Solanum pennellii HOM05D006954 ORTHO05D008729 3.3e-25 120.6 307 29.3
FAN06G0609 Fragaria x ananassa HOM05D006954 ORTHO05D008729 5.6e-25 119.8 346 31.8
MBI04_g09501_MAGBIO Magnolia biondii HOM05D006954 ORTHO05D008729 9.6e-25 119.0 383 30.5
FAN10G3525 Fragaria x ananassa HOM05D006954 ORTHO05D008729 1.2e-24 118.6 335 32.8
QL04p036448 Quercus lobata HOM05D006954 ORTHO05D008729 1.2e-24 118.6 327 32.7
COL.COLO4_12483 Corchorus olitorius HOM05D006954 ORTHO05D008729 1.6e-24 118.2 345 31.3
Prupe.2G137000 Prunus persica HOM05D006954 ORTHO05D008729 1.6e-24 118.2 333 32.1
FAN03G1627 Fragaria x ananassa HOM05D006954 ORTHO05D008729 2.1e-24 117.9 347 30.8
MD07G1114400 Malus domestica HOM05D006954 ORTHO05D008729 2.1e-24 117.9 344 31.7
Ciclev10023836m.g Citrus clementina HOM05D006638 ORTHO05D008246 4.7e-24 116.7 285 34.0
Ciclev10019520m.g Citrus clementina HOM05D006954 ORTHO05D008729 8.1e-24 115.9 360 29.4
Oeu009770.1 Olea europaea HOM05D006954 ORTHO05D008729 2.0e-22 111.3 353 30.0
Oeu026406.1 Olea europaea HOM05D006954 ORTHO05D008729 2.6e-22 110.9 329 32.2
EL10Ac1g00835 Beta vulgaris HOM05D006954 ORTHO05D008729 9.9e-22 109.0 307 31.3
Actinidia27466 Actinidia chinensis HOM05D001088 ORTHO05D002099 1.3e-21 108.6 326 32.2
CDE11G0492 Ceratophyllum demersum HOM05D006954 ORTHO05D008729 1.7e-21 108.2 304 32.9
AUR62013686 Chenopodium quinoa HOM05D006954 ORTHO05D008729 2.2e-21 107.8 305 31.5
HanXRQChr16g0511611 Helianthus annuus HOM05D006954 ORTHO05D008729 2.2e-21 107.8 360 28.9
RcHm_v2.0_Chr1g0349021 Rosa chinensis HOM05D006954 ORTHO05D008729 2.9e-21 107.5 338 30.5
ECA233G0962 Erigeron canadensis HOM05D006954 ORTHO05D008729 3.8e-21 107.1 309 29.4
Nitab4.5_0011151g0020 Nicotiana tabacum HOM05D006954 ORTHO05D008729 4.9e-21 106.7 299 31.4
Hund17048 Selenicereus undatus HOM05D006954 ORTHO05D008729 1.1e-20 105.5 262 32.4
CAN.G1872.2 Capsicum annuum HOM05D006954 ORTHO05D008729 1.4e-20 105.1 294 29.9
AUR62004161 Chenopodium quinoa HOM05D006954 ORTHO05D008729 1.9e-20 104.8 309 32.7
Eucgr.E00424 Eucalyptus grandis HOM05D006954 ORTHO05D008729 1.9e-20 104.8 353 28.0
Ah.05g173790 Amaranthus hybridus HOM05D006954 ORTHO05D008729 2.4e-20 104.4 292 29.8
Hma1.2p1_0316F.1_g123150 Hydrangea macrophylla HOM05D006954 ORTHO05D008729 2.4e-20 104.4 290 31.4
Oeu031219.1 Olea europaea HOM05D006954 ORTHO05D008729 2.4e-20 104.4 242 32.6
Peaxi162Scf00803g00025 Petunia axillaris HOM05D006954 ORTHO05D008729 2.4e-20 104.4 288 30.6
Rhsim07G0031700 Rhododendron simsii HOM05D001088 ORTHO05D002099 5.4e-20 103.2 275 30.9
ATR0317G083 Amborella trichopoda HOM05D006954 ORTHO05D008729 1.6e-19 101.7 354 30.5
Lj2A217G32 Lonicera japonica HOM05D006954 ORTHO05D008729 2.7e-19 100.9 292 33.2
Glyma.11G167382 Glycine max HOM05D006954 ORTHO05D008729 4.6e-19 100.1 335 29.9
Nitab4.5_0000859g0170 Nicotiana tabacum HOM05D006954 ORTHO05D008729 3.0e-18 97.4 398 27.6
DCAR_006832 Daucus carota HOM05D001088 ORTHO05D002099 3.9e-18 97.1 354 31.1
Hma1.2p1_0041F.1_g025380 Hydrangea macrophylla HOM05D006954 ORTHO05D008729 3.9e-18 97.1 297 29.6
SHI20280 Sapria himalayana HOM05D006954 ORTHO05D008729 1.5e-17 95.1 281 31.3
Sc02g0002800 Simmondsia chinensis HOM05D006954 ORTHO05D008729 5.6e-17 93.2 312 31.7
Lalb_Chr01g0021361 Lupinus albus HOM05D006954 ORTHO05D008729 1.3e-16 92.0 337 29.1
arahy.Tifrunner.gnm1.ann1.LN378K Arachis hypogaea HOM05D006954 ORTHO05D008729 1.1e-15 89.0 234 29.5
SalBow5G1520 Salvia bowleyana HOM05D006954 ORTHO05D008729 1.1e-15 89.0 308 29.9
arahy.Tifrunner.gnm1.ann1.UR8A7Q Arachis hypogaea HOM05D006954 ORTHO05D008729 1.8e-15 88.2 313 28.1
Duzib205G0178 Durio zibethinus HOM05D006954 ORTHO05D008729 2.4e-15 87.8 350 28.3
FAN04G0536 Fragaria x ananassa HOM05D006954 ORTHO05D008729 4.0e-15 87.0 324 27.8
Lalb_Chr07g0190311 Lupinus albus HOM05D006954 ORTHO05D008729 4.0e-15 87.0 307 30.9
ECA236G3196 Erigeron canadensis HOM05D006954 ORTHO05D008729 5.3e-15 86.7 232 28.0
FvH4_5g18930 Fragaria vesca HOM05D006954 ORTHO05D008729 6.9e-15 86.3 314 27.1
Phvul.010G071500 Phaseolus vulgaris HOM05D006954 ORTHO05D008729 6.9e-15 86.3 333 27.3
TAR636G1544 Trochodendron aralioides HOM05D006954 ORTHO05D008729 9.0e-15 85.9 244 30.7
RcHm_v2.0_Chr7g0203321 Rosa chinensis HOM05D006954 ORTHO05D008729 4.5e-14 83.6 345 27.5
VMungo1383G2724 Vigna mungo HOM05D006954 ORTHO05D008729 9.9e-14 82.4 324 25.3
FAN18G2950 Fragaria x ananassa HOM05D006954 ORTHO05D008729 1.3e-13 82.0 314 26.4
SGA_v2.0_scaffold11G05525 Striga asiatica HOM05D006954 ORTHO05D008729 1.7e-13 81.6 340 27.9
Phvul.008G143700 Phaseolus vulgaris HOM05D006954 ORTHO05D008729 2.2e-13 81.3 336 27.4
FAN13G0002 Fragaria x ananassa HOM05D006954 ORTHO05D008729 6.4e-13 79.7 324 26.9
Lj3g0019070 Lotus japonicus HOM05D006954 ORTHO05D008729 8.4e-13 79.3 309 27.5
Ca_19859_v3 Cicer arietinum L. HOM05D006954 ORTHO05D008729 1.1e-12 79.0 279 28.0
COL.COLO4_37173 Corchorus olitorius HOM05D006954 ORTHO05D008729 1.4e-12 78.6 390 24.6
Duzib136G0004 Durio zibethinus HOM05D006954 ORTHO05D008729 1.4e-12 78.6 350 26.9
PGR042G3906 Punica granatum HOM05D006954 ORTHO05D008729 1.9e-12 78.2 442 24.7
Nn6g33957 Nelumbo nucifera HOM05D006954 ORTHO05D008729 3.2e-12 77.4 183 34.4
Nitab4.5_0001076g0060 Nicotiana tabacum HOM05D020458 ORTHO05D022160 2.1e-11 74.7 227 30.0
CDE09G0910 Ceratophyllum demersum HOM05D006954 ORTHO05D008729 2.7e-11 74.3 194 29.9
Glyma.03G033300 Glycine max HOM05D006954 ORTHO05D008729 7.9e-11 72.8 312 25.3
Lsat_1_v5_gn_7_8881 Lactuca sativa HOM05D006954 ORTHO05D008729 3.9e-10 70.5 224 27.2
Glyma.01G134400 Glycine max HOM05D006954 ORTHO05D008729 5.1e-10 70.1 322 25.8
HanXRQChr06g0168891 Helianthus annuus HOM05D006954 ORTHO05D008729 6.7e-10 69.7 221 26.2
HanXRQChr06g0169051 Helianthus annuus HOM05D006954 ORTHO05D008729 6.7e-10 69.7 221 26.2
Prupe.5G069800 Prunus persica HOM05D006954 ORTHO05D008729 3.3e-09 67.4 358 24.9
Psat0s3685g0160 Pisum sativum HOM05D006954 ORTHO05D008729 7.4e-09 66.2 290 25.2
MSTRG.3015 Avicennia marina HOM05D005220 ORTHO05D006082 3.7e-08 63.9 241 22.4
Actinidia07816 Actinidia chinensis HOM05D005220 ORTHO05D006082 6.2e-08 63.2 209 23.0
Cc07_g04000 Coffea canephora HOM05D005220 ORTHO05D006082 6.2e-08 63.2 208 24.0
Dinv34960 Davidia involucrata HOM05D005220 ORTHO05D006082 8.1e-08 62.8 214 26.2
Nn3g17397 Nelumbo nucifera HOM05D005220 ORTHO05D006082 1.1e-07 62.4 208 25.0
Nitab4.5_0000618g0050 Nicotiana tabacum HOM05D020458 ORTHO05D022160 1.1e-07 62.4 254 26.8
Nitab4.5_0007954g0010 Nicotiana tabacum HOM05D005220 ORTHO05D006082 1.8e-07 61.6 252 25.0
TPR.G4994 Trifolium pratense HOM05D006954 ORTHO05D008246 2.4e-07 61.2 257 23.0
Hma1.2p1_0481F.1_g161950 Hydrangea macrophylla HOM05D005220 ORTHO05D006082 3.1e-07 60.8 215 24.2
Hund02604 Selenicereus undatus HOM05D005220 ORTHO05D006082 3.1e-07 60.8 269 22.3
CSS0002601 Camellia sinensis var. sinensis HOM05D005220 ORTHO05D006082 4.0e-07 60.5 214 22.9
Lsat_1_v5_gn_2_87740 Lactuca sativa HOM05D005220 ORTHO05D006082 5.3e-07 60.1 335 21.8
Potri.017G091700 Populus trichocarpa HOM05D005220 ORTHO05D006082 6.9e-07 59.7 223 23.8
Dinv33817 Davidia involucrata HOM05D005220 ORTHO05D006082 9.0e-07 59.3 209 24.4
PSO017G3052 Papaver somniferum HOM05D005220 ORTHO05D006082 9.0e-07 59.3 215 20.9
Thecc.03G251300 Theobroma cacao HOM05D006954 ORTHO05D008729 1.2e-06 58.9 87 43.7
MSTRG.23894 Avicennia marina HOM05D005220 ORTHO05D006082 1.5e-06 58.5 240 21.7
TAR629G0541 Trochodendron aralioides HOM05D005220 ORTHO05D006082 1.5e-06 58.5 34 58.8
DCAR_011050 Daucus carota HOM05D005220 ORTHO05D006082 2.6e-06 57.8 252 24.2
Rhsim10G0044300 Rhododendron simsii HOM05D005220 ORTHO05D006082 2.6e-06 57.8 213 24.4
CiPaw.04G057500 Carya illinoinensis HOM05D005220 ORTHO05D006082 3.4e-06 57.4 217 22.1
Nitab4.5_0000212g0170 Nicotiana tabacum HOM05D005220 ORTHO05D006082 3.4e-06 57.4 252 24.6
Actinidia01983 Actinidia chinensis HOM05D005220 ORTHO05D006082 4.5e-06 57.0 208 22.1
Lju41C5T5 Lonicera japonica HOM05D005220 ORTHO05D006082 4.5e-06 57.0 219 22.8
TAR374G0076 Trochodendron aralioides HOM05D005220 ORTHO05D006082 4.5e-06 57.0 240 22.5
TAR622G0939 Trochodendron aralioides HOM05D005220 ORTHO05D006082 4.5e-06 57.0 207 22.2
PSO302G0007 Papaver somniferum HOM05D005220 ORTHO05D006082 5.8e-06 56.6 215 20.9
Sabra17G0080700 Salix brachista HOM05D005220 ORTHO05D006082 7.6e-06 56.2 220 23.6
Sc10g0003210 Simmondsia chinensis HOM05D005220 ORTHO05D006082 7.6e-06 56.2 219 22.8


User provided reference genes

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