Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_008498 Vanilla planifolia HOM05D007206 ORTHO05D009176 6.9e-107 390.6 187 100.0
Aqoxy1G01032 Aquilegia oxysepala HOM05D007206 ORTHO05D009176 8.8e-46 187.6 167 50.9
RcHm_v2.0_Chr3g0471351 Rosa chinensis HOM05D007206 ORTHO05D009176 4.1e-43 178.7 172 47.1
Prupe.7G122800 Prunus persica HOM05D007206 ORTHO05D009176 3.5e-42 175.6 168 47.6
QL07p041366 Quercus lobata HOM05D007206 ORTHO05D009176 4.5e-42 175.3 167 48.5
SGA_v2.0_scaffold657G53380 Striga asiatica HOM05D007206 ORTHO05D009176 4.5e-42 175.3 168 48.2
FvH4_6g17250 Fragaria vesca HOM05D007206 ORTHO05D009176 7.7e-42 174.5 144 51.4
FAN05G5006 Fragaria x ananassa HOM05D007206 ORTHO05D009176 7.7e-42 174.5 147 51.0
Hma1.2p1_0564F.1_g179170 Hydrangea macrophylla HOM05D007206 ORTHO05D009176 1.0e-41 174.1 167 48.5
MD14G1096900 Malus domestica HOM05D007206 ORTHO05D009176 1.7e-41 173.3 166 44.6
Cc06_g04800 Coffea canephora HOM05D007206 ORTHO05D009176 2.3e-41 172.9 169 45.6
FAN05G2314 Fragaria x ananassa HOM05D007206 ORTHO05D009176 2.3e-41 172.9 147 50.3
TPR.G31671 Trifolium pratense HOM05D007206 ORTHO05D009176 2.3e-41 172.9 139 53.2
Ca_08938_v3 Cicer arietinum L. HOM05D007206 ORTHO05D009176 3.8e-41 172.2 141 51.1
Ca_30111_v3 Cicer arietinum L. HOM05D007206 ORTHO05D009176 3.8e-41 172.2 141 51.1
Cpa.g.sc5.124 Carica papaya HOM05D007206 ORTHO05D009176 5.0e-41 171.8 169 47.9
Manes.09G048990 Manihot esculenta HOM05D007206 ORTHO05D009176 5.0e-41 171.8 162 46.9
Sed0016601 Sechium edule HOM05D007206 ORTHO05D009176 5.0e-41 171.8 169 48.5
FAN14G2195 Fragaria x ananassa HOM05D007206 ORTHO05D009176 6.6e-41 171.4 144 50.7
MBI18_g24930_MAGBIO Magnolia biondii HOM05D007206 ORTHO05D009176 6.6e-41 171.4 148 54.1
Medtr7g102770 Medicago truncatula HOM05D007206 ORTHO05D009176 6.6e-41 171.4 161 47.2
CiPaw.09G005300 Carya illinoinensis HOM05D007206 ORTHO05D009176 8.6e-41 171.0 175 46.3
Glyma.19G188400 Glycine max HOM05D007206 ORTHO05D009176 8.6e-41 171.0 167 45.5
TWI77G0103 Tripterygium wilfordii HOM05D007206 ORTHO05D009176 1.1e-40 170.6 167 46.7
Lj1g0012469 Lotus japonicus HOM05D007206 ORTHO05D009176 1.5e-40 170.2 177 44.1
MD12G1102700 Malus domestica HOM05D007206 ORTHO05D009176 1.5e-40 170.2 142 52.1
Haze_19480 Corylus avellana HOM05D007206 ORTHO05D009176 1.9e-40 169.9 167 46.1
Eucgr.K02418 Eucalyptus grandis HOM05D007206 ORTHO05D009176 1.9e-40 169.9 174 46.0
Migut.J00478 Erythranthe guttata HOM05D007206 ORTHO05D009176 2.5e-40 169.5 172 47.7
DCAR_017648 Daucus carota HOM05D007206 ORTHO05D009176 4.3e-40 168.7 170 47.6
CSS0049694 Camellia sinensis var. sinensis HOM05D007206 ORTHO05D009176 7.2e-40 167.9 139 53.2
Phvul.001G183600 Phaseolus vulgaris HOM05D007206 ORTHO05D009176 7.2e-40 167.9 154 48.1
MELO3C009409.2 Cucumis melo HOM05D007206 ORTHO05D009176 1.2e-39 167.2 140 55.0
Hund01087 Selenicereus undatus HOM05D007206 ORTHO05D009176 1.2e-39 167.2 148 47.3
Actinidia32469 Actinidia chinensis HOM05D007206 ORTHO05D009176 1.6e-39 166.8 165 44.8
CAN.G1759.3 Capsicum annuum HOM05D007206 ORTHO05D009176 1.6e-39 166.8 140 52.1
Glyma.03G188300 Glycine max HOM05D007206 ORTHO05D009176 1.6e-39 166.8 184 42.4
Potri.006G119100 Populus trichocarpa HOM05D007206 ORTHO05D009176 1.6e-39 166.8 170 45.9
THA.LOC104826925 Tarenaya hassleriana HOM05D007206 ORTHO05D009176 2.1e-39 166.4 144 51.4
Carub.0003s0903 Capsella rubella HOM05D007206 ORTHO05D009176 2.8e-39 166.0 165 46.1
CsaV3_3G036450 Cucumis sativus L. HOM05D007206 ORTHO05D009176 2.8e-39 166.0 169 49.7
Sopen01g017760 Solanum pennellii HOM05D007206 ORTHO05D009176 2.8e-39 166.0 138 53.6
ATR0580G453 Amborella trichopoda HOM05D007206 ORTHO05D009176 3.6e-39 165.6 169 49.7
VMungo1383G0088 Vigna mungo HOM05D007206 ORTHO05D009176 3.6e-39 165.6 177 43.5
ClCG10G019630 Citrullus lanatus HOM05D007206 ORTHO05D009176 4.7e-39 165.2 139 53.2
Oeu017000.1 Olea europaea HOM05D007206 ORTHO05D009176 4.7e-39 165.2 167 44.9
PSO063G5977 Papaver somniferum HOM05D007206 ORTHO05D009176 8.0e-39 164.5 164 45.1
Solyc09g008590.4 Solanum lycopersicum HOM05D007206 ORTHO05D009176 8.0e-39 164.5 138 52.9
PGSC0003DMG400012983 Solanum tuberosum HOM05D007206 ORTHO05D009176 8.0e-39 164.5 138 52.9
CARHR084450 Cardamine hirsuta HOM05D007206 ORTHO05D009176 1.0e-38 164.1 137 51.8
Sc02g0001330 Simmondsia chinensis HOM05D007206 ORTHO05D009176 1.4e-38 163.7 173 45.7
AL3G21200 Arabidopsis lyrata HOM05D007206 ORTHO05D009176 2.3e-38 162.9 165 45.5
Sabra06G0093700 Salix brachista HOM05D007206 ORTHO05D009176 3.0e-38 162.5 140 52.1
Lalb_Chr25g0288781 Lupinus albus HOM05D007206 ORTHO05D009176 6.8e-38 161.4 138 48.6
ECA233G5177 Erigeron canadensis HOM05D007206 ORTHO05D009176 8.9e-38 161.0 167 44.9
C03p43430 Brassica napus HOM05D007206 ORTHO05D009176 1.2e-37 160.6 142 47.9
HanXRQChr13g0400551 Helianthus annuus HOM05D007206 ORTHO05D009176 1.2e-37 160.6 171 42.1
Lsat_1_v5_gn_6_28201 Lactuca sativa HOM05D007206 ORTHO05D009176 1.5e-37 160.2 149 45.6
AT3G09925 Arabidopsis thaliana HOM05D007206 ORTHO05D009176 2.0e-37 159.8 165 45.5
BcaC01g04253 Brassica carinata HOM05D007206 ORTHO05D009176 2.6e-37 159.5 141 48.2
BolC3t16614H Brassica oleracea HOM05D007206 ORTHO05D009176 2.6e-37 159.5 141 48.2
BraA03t12750Z Brassica rapa HOM05D007206 ORTHO05D009176 2.6e-37 159.5 141 47.5
Aa31LG3G2410 Aethionema arabicum HOM05D007206 ORTHO05D009176 3.4e-37 159.1 137 49.6
Psat0s4599g0080 Pisum sativum HOM05D007206 ORTHO05D009176 3.4e-37 159.1 171 42.7
A05p39080 Brassica napus HOM05D007206 ORTHO05D009176 5.7e-37 158.3 164 45.1
BraA05t22700Z Brassica rapa HOM05D007206 ORTHO05D009176 5.7e-37 158.3 164 45.1
BcaB03g11581 Brassica carinata HOM05D007206 ORTHO05D009176 7.5e-37 157.9 165 44.2
C05p58110 Brassica napus HOM05D007206 ORTHO05D009176 7.5e-37 157.9 164 45.1
BolC5t34468H Brassica oleracea HOM05D007206 ORTHO05D009176 7.5e-37 157.9 164 45.1
Sp3g08280 Schrenkiella parvula HOM05D007206 ORTHO05D009176 9.8e-37 157.5 165 43.6
Cfa016483 Carpinus fangiana HOM05D007539 ORTHO05D009315 1.7e-36 156.8 159 45.3
Thhalv10021649m.g Eutrema salsugineum HOM05D007206 ORTHO05D009176 1.7e-36 156.8 146 47.3
SalBow3G1834 Salvia bowleyana HOM05D007206 ORTHO05D009176 2.2e-36 156.4 166 45.2
A03p35770 Brassica napus HOM05D007206 ORTHO05D009176 3.7e-36 155.6 142 47.2
CANSAT80G1624 Cannabis sativa HOM05D007206 ORTHO05D009176 1.6e-34 150.2 164 41.5
AUR62043339 Chenopodium quinoa HOM05D007206 ORTHO05D009176 2.0e-34 149.8 175 37.7
Duzib093G2029 Durio zibethinus HOM05D007206 ORTHO05D009176 1.3e-33 147.1 142 45.8
Lj2C124T14 Lonicera japonica HOM05D007206 ORTHO05D009176 3.0e-33 146.0 141 46.1
Atru.chr8.1702 Acer truncatum HOM05D007206 ORTHO05D009176 1.9e-32 143.3 140 45.7
Sed0006266 Sechium edule HOM05D007206 ORTHO05D009176 1.9e-32 143.3 139 48.2
Ciclev10006960m.g Citrus clementina HOM05D007206 ORTHO05D009176 4.3e-32 142.1 186 39.2
Thecc.05G075700 Theobroma cacao HOM05D007206 ORTHO05D009176 5.6e-32 141.7 164 40.9
COL.COLO4_22256 Corchorus olitorius HOM05D007206 ORTHO05D009176 3.6e-31 139.0 138 46.4
Os10g0546100 Oryza sativa ssp. japonica HOM05D007206 ORTHO05D009176 4.7e-31 138.7 169 41.4
EL10Ac9g22544 Beta vulgaris HOM05D007206 ORTHO05D009176 1.8e-30 136.7 148 45.3
Gohir.D01G129600 Gossypium hirsutum HOM05D007206 ORTHO05D009176 5.2e-30 135.2 166 39.8
AUR62022783 Chenopodium quinoa HOM05D007206 ORTHO05D009176 1.2e-29 134.0 146 41.1
PSO339G4243 Papaver somniferum HOM05D007206 ORTHO05D009176 1.2e-29 134.0 151 46.4
Gorai.002G160400 Gossypium raimondii HOM05D007206 ORTHO05D009176 1.5e-29 133.7 138 43.5
PSO063G3127 Papaver somniferum HOM05D007206 ORTHO05D009176 4.9e-28 128.6 150 44.0
Peaxi162Scf01195g00005 Petunia axillaris HOM05D007206 ORTHO05D009176 7.0e-27 124.8 140 40.7
arahy.Tifrunner.gnm1.ann1.A01TPE Arachis hypogaea HOM05D007206 ORTHO05D009176 2.7e-26 122.9 119 46.2
Zm00001eb022730 Zea mays HOM05D007206 ORTHO05D009176 7.8e-26 121.3 161 39.1
arahy.Tifrunner.gnm1.ann1.06CJ1U Arachis hypogaea HOM05D007206 ORTHO05D009176 1.3e-25 120.6 118 45.8
BcaC05g29720 Brassica carinata HOM05D007206 ORTHO05D009176 2.3e-25 119.8 143 42.0
Dinv35836 Davidia involucrata HOM05D007206 ORTHO05D009176 1.1e-24 117.5 105 53.3
DCAR_017650 Daucus carota HOM05D007206 ORTHO05D009176 2.5e-24 116.3 140 40.7
GSVIVG01033715001 Vitis vinifera HOM05D007206 ORTHO05D009176 1.6e-18 97.1 90 48.9
GSVIVG01033719001 Vitis vinifera HOM05D007206 ORTHO05D009176 1.6e-18 97.1 90 48.9
FAN09G1747 Fragaria x ananassa HOM05D007206 ORTHO05D022624 2.7e-18 96.3 90 47.8
Eucgr.F02194 Eucalyptus grandis HOM05D007206 ORTHO05D009176 2.5e-16 89.7 129 36.4
Os01g0164300 Oryza sativa ssp. japonica HOM05D005469 ORTHO05D001701 5.8e-13 78.6 143 33.6
ATR0174G015 Amborella trichopoda HOM05D005469 ORTHO05D001701 1.7e-12 77.0 166 31.9
PGR142G1835 Punica granatum HOM05D005469 ORTHO05D001701 1.4e-11 73.9 179 30.7
CANSAT56G4151 Cannabis sativa HOM05D005469 ORTHO05D001701 4.1e-11 72.4 173 30.6
Potri.010G185400 Populus trichocarpa HOM05D005469 ORTHO05D001701 4.1e-11 72.4 166 29.5
Cc02_g06130 Coffea canephora HOM05D005469 ORTHO05D001701 5.4e-11 72.0 167 29.9
Sabra10G0142600 Salix brachista HOM05D005469 ORTHO05D001701 5.4e-11 72.0 166 30.1
CANSAT56G3078 Cannabis sativa HOM05D005469 ORTHO05D001701 7.1e-11 71.6 173 30.6
Potri.008G072000 Populus trichocarpa HOM05D005469 ORTHO05D001701 1.6e-10 70.5 173 30.6
COL.COLO4_25530 Corchorus olitorius HOM05D005469 ORTHO05D001701 2.7e-10 69.7 169 27.8
Lj1C959T17 Lonicera japonica HOM05D005469 ORTHO05D001701 2.7e-10 69.7 170 29.4
Peaxi162Scf00045g02525 Petunia axillaris HOM05D000087 ORTHO05D000793 2.7e-10 69.7 142 30.3
HPP92_018099 Vanilla planifolia HOM05D005469 ORTHO05D001701 2.7e-10 69.7 168 29.2
CAN.G1268.13 Capsicum annuum HOM05D005469 ORTHO05D001701 7.8e-10 68.2 141 31.2
DCAR_024812 Daucus carota HOM05D005469 ORTHO05D001701 7.8e-10 68.2 173 30.1
SMO111G0230 Selaginella moellendorffii HOM05D007206 ORTHO05D009176 7.8e-10 68.2 134 30.6
SMO351G0668 Selaginella moellendorffii HOM05D007206 ORTHO05D009176 7.8e-10 68.2 134 30.6
FAN01G2198 Fragaria x ananassa HOM05D005469 ORTHO05D001701 1.0e-09 67.8 168 32.1
CSS0028429 Camellia sinensis var. sinensis HOM05D005469 ORTHO05D001701 1.3e-09 67.4 165 31.5
Sabra08G0053200 Salix brachista HOM05D005469 ORTHO05D001701 1.3e-09 67.4 172 28.5
AUR62012286 Chenopodium quinoa HOM05D005469 ORTHO05D001701 2.3e-09 66.6 187 28.3
AUR62022927 Chenopodium quinoa HOM05D005469 ORTHO05D001701 2.3e-09 66.6 187 28.3
Ah.10g036310 Amaranthus hybridus HOM05D005469 ORTHO05D001701 3.0e-09 66.2 146 30.1
Sopen06g016860 Solanum pennellii HOM05D005469 ORTHO05D001701 3.0e-09 66.2 167 31.1
Nitab4.5_0003391g0070 Nicotiana tabacum HOM05D000087 ORTHO05D000793 3.9e-09 65.9 165 30.9
RcHm_v2.0_Chr1g0370791 Rosa chinensis HOM05D005469 ORTHO05D001701 3.9e-09 65.9 165 30.9
PGSC0003DMG400030033 Solanum tuberosum HOM05D005469 ORTHO05D001701 3.9e-09 65.9 167 30.5
Nitab4.5_0000058g0190 Nicotiana tabacum HOM05D005469 ORTHO05D001701 5.1e-09 65.5 167 29.9
Nitab4.5_0000666g0120 Nicotiana tabacum HOM05D005469 ORTHO05D001701 5.1e-09 65.5 177 28.2
Nitab4.5_0000789g0080 Nicotiana tabacum HOM05D005469 ORTHO05D001701 6.6e-09 65.1 142 31.7
FvH4_7g24910 Fragaria vesca HOM05D005469 ORTHO05D001701 8.6e-09 64.7 168 31.5
BcaB05g21713 Brassica carinata HOM05D005469 ORTHO05D001701 1.1e-08 64.3 141 28.4
Dinv21761 Davidia involucrata HOM05D005469 ORTHO05D001701 1.1e-08 64.3 167 31.1
Atru.chr12.80 Acer truncatum HOM05D005469 ORTHO05D001701 2.5e-08 63.2 186 26.3
EL10Ac2g04878 Beta vulgaris HOM05D005469 ORTHO05D001701 2.5e-08 63.2 187 28.9
TPR.G30151 Trifolium pratense HOM05D005469 ORTHO05D001701 2.5e-08 63.2 166 27.1
Medtr3g071470 Medicago truncatula HOM05D005469 ORTHO05D001701 3.3e-08 62.8 163 27.0
Duzib160G0415 Durio zibethinus HOM05D003009 ORTHO05D001701 9.6e-08 61.2 139 33.8
THA.LOC104826842 Tarenaya hassleriana HOM05D005469 ORTHO05D001701 9.6e-08 61.2 146 28.1
QL08p063579 Quercus lobata HOM05D005469 ORTHO05D001701 1.2e-07 60.8 162 27.2
AagrBONN_evm.TU.Sc2ySwM_368.1639 Anthoceros agrestis HOM05D006293 ORTHO05D009176 2.8e-07 59.7 127 29.9
Gohir.A06G128400 Gossypium hirsutum HOM05D003009 ORTHO05D001701 2.8e-07 59.7 138 31.9
Gorai.010G154300 Gossypium raimondii HOM05D003009 ORTHO05D001701 2.8e-07 59.7 138 31.9
SMO133G0010 Selaginella moellendorffii HOM05D007206 ORTHO05D002427 2.8e-07 59.7 131 32.8
ClCG07G004420 Citrullus lanatus HOM05D005469 ORTHO05D001701 3.6e-07 59.3 179 27.9
Duzib192G0967 Durio zibethinus HOM05D003009 ORTHO05D001701 3.6e-07 59.3 139 33.1
MELO3C018370.2 Cucumis melo HOM05D005469 ORTHO05D001701 4.7e-07 58.9 165 28.5
Psat5g130360 Pisum sativum HOM05D005469 ORTHO05D001701 4.7e-07 58.9 166 25.9
Lj8C63T7 Lonicera japonica HOM05D005469 ORTHO05D001701 6.2e-07 58.5 164 28.7
VMungo1383G2982 Vigna mungo HOM05D005469 ORTHO05D001701 6.2e-07 58.5 176 27.3
Duzib235G1045 Durio zibethinus HOM05D003009 ORTHO05D001701 8.1e-07 58.2 139 32.4
Glyma.11G232100 Glycine max HOM05D005469 ORTHO05D001701 1.1e-06 57.8 176 27.3
CAN.G529.5 Capsicum annuum HOM05D003009 ORTHO05D001701 1.4e-06 57.4 135 31.9
Glyma.18G025200 Glycine max HOM05D005469 ORTHO05D001701 1.4e-06 57.4 168 26.8
Ca_15147_v3 Cicer arietinum L. HOM05D005469 ORTHO05D001701 1.8e-06 57.0 141 27.7
Phvul.001G245200 Phaseolus vulgaris HOM05D005469 ORTHO05D001701 3.1e-06 56.2 177 27.7
PGSC0003DMG400029695 Solanum tuberosum HOM05D003009 ORTHO05D001701 3.1e-06 56.2 141 31.9
Thecc.06G185700 Theobroma cacao HOM05D003009 ORTHO05D001701 3.1e-06 56.2 138 32.6
CAN.G19.12 Capsicum annuum HOM05D005469 ORTHO05D001701 4.0e-06 55.8 168 28.6
MD10G1293100 Malus domestica HOM05D003009 ORTHO05D001701 4.0e-06 55.8 141 31.2
CsaV3_5G010340 Cucumis sativus L. HOM05D005469 ORTHO05D001701 6.8e-06 55.1 159 25.8
THA.LOC104820687 Tarenaya hassleriana HOM05D003009 ORTHO05D001701 6.8e-06 55.1 142 29.6
Nitab4.5_0001652g0150 Nicotiana tabacum HOM05D003009 ORTHO05D001701 8.9e-06 54.7 142 31.0


User provided reference genes

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