Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_008486 Vanilla planifolia HOM05D003200 ORTHO05D003574 2.7e-107 392.1 215 100.0
HPP92_008488 Vanilla planifolia HOM05D003200 ORTHO05D003574 1.7e-40 170.2 160 64.4
HPP92_005025 Vanilla planifolia HOM05D003200 ORTHO05D003574 4.6e-30 135.6 155 52.9
CDE04G0125 Ceratophyllum demersum HOM05D003200 ORTHO05D003574 3.3e-20 102.8 164 43.9
MBI06_g07796_MAGBIO Magnolia biondii HOM05D003200 ORTHO05D003574 1.3e-19 100.9 158 43.7
TAR636G3550 Trochodendron aralioides HOM05D003200 ORTHO05D003574 2.8e-19 99.8 156 44.2
Dinv43936 Davidia involucrata HOM05D003200 ORTHO05D003574 6.2e-19 98.6 162 42.6
TAR369G0274 Trochodendron aralioides HOM05D003200 ORTHO05D003574 6.2e-19 98.6 135 47.4
TAR633G1334 Trochodendron aralioides HOM05D003200 ORTHO05D003574 1.1e-18 97.8 135 47.4
CDE02G1896 Ceratophyllum demersum HOM05D003200 ORTHO05D003574 2.4e-18 96.7 105 54.3
GSVIVG01001362001 Vitis vinifera HOM05D003200 ORTHO05D003574 6.9e-18 95.1 143 48.3
Dinv43495 Davidia involucrata HOM05D003200 ORTHO05D003574 1.2e-17 94.4 136 47.8
TAR623G0555 Trochodendron aralioides HOM05D003200 ORTHO05D003574 4.9e-16 89.0 156 41.7
Ca_11388_v3 Cicer arietinum L. HOM05D003200 ORTHO05D003574 4.2e-15 85.9 121 46.3
Lj5g0003842 Lotus japonicus HOM05D003200 ORTHO05D003574 4.2e-15 85.9 137 41.6
PSO339G4963 Papaver somniferum HOM05D003200 ORTHO05D003574 2.1e-14 83.6 166 38.6
Hund21653 Selenicereus undatus HOM05D003200 ORTHO05D003574 2.1e-14 83.6 152 41.4
Phvul.007G005200 Phaseolus vulgaris HOM05D003200 ORTHO05D003574 3.5e-14 82.8 109 47.7
TPR.G10419 Trifolium pratense HOM05D003200 ORTHO05D003574 3.5e-14 82.8 124 45.2
VMungo0720G1305 Vigna mungo HOM05D003200 ORTHO05D003574 3.5e-14 82.8 113 49.6
Psat6g241840 Pisum sativum HOM05D003200 ORTHO05D003574 6.0e-14 82.0 105 50.5
SEGI_19228 Sequoiadendron giganteum HOM05D003200 ORTHO05D003574 6.0e-14 82.0 103 48.5
Eucgr.B02607 Eucalyptus grandis HOM05D003200 ORTHO05D003574 7.9e-14 81.6 107 44.9
Lalb_Chr02g0144231 Lupinus albus HOM05D003200 ORTHO05D003574 7.9e-14 81.6 113 48.7
Medtr1g116330 Medicago truncatula HOM05D003200 ORTHO05D003574 7.9e-14 81.6 118 45.8
Actinidia06303 Actinidia chinensis HOM05D003200 ORTHO05D003574 1.0e-13 81.3 152 42.1
Glyma.20G244700 Glycine max HOM05D003200 ORTHO05D003574 1.0e-13 81.3 114 46.5
Sc09g0000340 Simmondsia chinensis HOM05D003200 ORTHO05D003574 1.0e-13 81.3 146 42.5
Sc16g0011990 Simmondsia chinensis HOM05D003200 ORTHO05D003574 1.0e-13 81.3 152 40.1
Prupe.6G014100 Prunus persica HOM05D003200 ORTHO05D003574 1.3e-13 80.9 147 41.5
Dinv36326 Davidia involucrata HOM05D003200 ORTHO05D003574 1.8e-13 80.5 116 45.7
Hma1.2p1_0505F.1_g168170 Hydrangea macrophylla HOM05D003200 ORTHO05D003574 3.0e-13 79.7 155 38.1
Glyma.10G294900 Glycine max HOM05D003200 ORTHO05D003574 3.9e-13 79.3 107 48.6
Lalb_Chr06g0164391 Lupinus albus HOM05D003200 ORTHO05D003574 3.9e-13 79.3 117 46.2
HanXRQChr11g0345461 Helianthus annuus HOM05D003200 ORTHO05D003574 5.1e-13 79.0 162 42.0
MD03G1014800 Malus domestica HOM05D003200 ORTHO05D003574 5.1e-13 79.0 143 40.6
Actinidia06863 Actinidia chinensis HOM05D003200 ORTHO05D003574 6.7e-13 78.6 64 67.2
ATR0807G127 Amborella trichopoda HOM05D003200 ORTHO05D003574 6.7e-13 78.6 107 47.7
Sed0018020 Sechium edule HOM05D003200 ORTHO05D003574 6.7e-13 78.6 157 38.9
Cfa009640 Carpinus fangiana HOM05D003200 ORTHO05D003574 8.7e-13 78.2 125 44.0
FvH4_3g44330 Fragaria vesca HOM05D003200 ORTHO05D003574 8.7e-13 78.2 130 42.3
FAN11G2071 Fragaria x ananassa HOM05D003200 ORTHO05D003574 8.7e-13 78.2 130 42.3
FAN21G1034 Fragaria x ananassa HOM05D003200 ORTHO05D003574 8.7e-13 78.2 130 42.3
PGR102G1285 Punica granatum HOM05D003200 ORTHO05D003574 8.7e-13 78.2 120 45.0
TWI60G0814 Tripterygium wilfordii HOM05D003200 ORTHO05D003574 8.7e-13 78.2 109 45.9
Aqoxy1G00122 Aquilegia oxysepala HOM05D003200 ORTHO05D003574 1.5e-12 77.4 147 38.8
Sed0003084 Sechium edule HOM05D003200 ORTHO05D003574 1.5e-12 77.4 144 40.3
Lalb_Chr21g0307561 Lupinus albus HOM05D003200 ORTHO05D003574 3.3e-12 76.3 112 44.6
CSS0033476 Camellia sinensis var. sinensis HOM05D003200 ORTHO05D003574 4.3e-12 75.9 63 66.7
Ciclev10015088m.g Citrus clementina HOM05D003200 ORTHO05D003574 5.6e-12 75.5 135 40.7
MELO3C023513.2 Cucumis melo HOM05D003200 ORTHO05D003574 5.6e-12 75.5 151 40.4
RcHm_v2.0_Chr5g0080701 Rosa chinensis HOM05D003200 ORTHO05D003574 7.4e-12 75.1 123 42.3
CiPaw.13G170600 Carya illinoinensis HOM05D003200 ORTHO05D003574 1.3e-11 74.3 153 37.9
COL.COLO4_10428 Corchorus olitorius HOM05D003200 ORTHO05D003574 1.6e-11 73.9 115 45.2
Rhsim01G0186500 Rhododendron simsii HOM05D003200 ORTHO05D003574 1.6e-11 73.9 155 36.1
AL6G31430 Arabidopsis lyrata HOM05D003200 ORTHO05D003574 2.1e-11 73.6 131 39.7
FAN16G1057 Fragaria x ananassa HOM05D003200 ORTHO05D003574 2.1e-11 73.6 133 41.4
TWI32G0311 Tripterygium wilfordii HOM05D003200 ORTHO05D003574 2.1e-11 73.6 109 44.0
MELO3C014649.2 Cucumis melo HOM05D003200 ORTHO05D003574 2.8e-11 73.2 116 43.1
FAN25G2592 Fragaria x ananassa HOM05D003200 ORTHO05D003574 3.6e-11 72.8 133 41.4
Manes.15G103800 Manihot esculenta HOM05D003200 ORTHO05D003574 3.6e-11 72.8 108 44.4
MELO3C014647.2 Cucumis melo HOM05D003200 ORTHO05D003574 4.8e-11 72.4 115 45.2
CsaV3_4G023710 Cucumis sativus L. HOM05D003200 ORTHO05D003574 4.8e-11 72.4 115 45.2
Lj1P478T20 Lonicera japonica HOM05D003200 ORTHO05D003574 4.8e-11 72.4 107 46.7
MD11G1016000 Malus domestica HOM05D003200 ORTHO05D003574 6.2e-11 72.0 116 42.2
Rhsim13G0227400 Rhododendron simsii HOM05D003200 ORTHO05D003574 6.2e-11 72.0 71 57.7
CiPaw.14G129600 Carya illinoinensis HOM05D003200 ORTHO05D003574 8.1e-11 71.6 113 42.5
CsaV3_7G031440 Cucumis sativus L. HOM05D003200 ORTHO05D003574 8.1e-11 71.6 153 41.2
Thecc.09G216900 Theobroma cacao HOM05D003200 ORTHO05D003574 8.1e-11 71.6 114 45.6
Gohir.D05G069100 Gossypium hirsutum HOM05D003200 ORTHO05D003574 1.1e-10 71.2 109 44.0
Peaxi162Scf00780g00043 Petunia axillaris HOM05D003200 ORTHO05D003574 1.1e-10 71.2 159 38.4
Sp6g24480 Schrenkiella parvula HOM05D003200 ORTHO05D003574 1.1e-10 71.2 64 60.9
BcaB01g04847 Brassica carinata HOM05D003200 ORTHO05D003574 1.4e-10 70.9 67 59.7
Lj2P674T26 Lonicera japonica HOM05D003200 ORTHO05D003574 1.4e-10 70.9 64 62.5
Potri.001G011800 Populus trichocarpa HOM05D003200 ORTHO05D003574 1.4e-10 70.9 65 64.6
AT5G19900 Arabidopsis thaliana HOM05D003200 ORTHO05D003574 1.8e-10 70.5 64 60.9
EL10Ac4g10333 Beta vulgaris HOM05D003200 ORTHO05D003574 1.8e-10 70.5 176 39.8
Carub.0006s1827 Capsella rubella HOM05D003200 ORTHO05D003574 1.8e-10 70.5 64 60.9
CARHR192960 Cardamine hirsuta HOM05D003200 ORTHO05D003574 1.8e-10 70.5 64 60.9
Thhalv10013350m.g Eutrema salsugineum HOM05D003200 ORTHO05D003574 1.8e-10 70.5 64 60.9
Manes.03G089900 Manihot esculenta HOM05D003200 ORTHO05D003574 1.8e-10 70.5 65 63.1
THA.LOC104811052 Tarenaya hassleriana HOM05D003200 ORTHO05D003574 1.8e-10 70.5 65 60.0
Cpa.g.c36927 Carica papaya HOM05D003200 ORTHO05D003574 2.4e-10 70.1 117 41.0
Cpa.g.c43902 Carica papaya HOM05D003200 ORTHO05D003574 2.4e-10 70.1 117 41.0
ClCG02G023720 Citrullus lanatus HOM05D003200 ORTHO05D003574 2.4e-10 70.1 113 45.1
Ah.06g193140 Amaranthus hybridus HOM05D003200 ORTHO05D003574 3.1e-10 69.7 150 41.3
Lsat_1_v5_gn_1_68481 Lactuca sativa HOM05D003200 ORTHO05D003574 3.1e-10 69.7 69 58.0
PGR119G1170 Punica granatum HOM05D003200 ORTHO05D003574 3.1e-10 69.7 108 44.4
Sabra03G0160000 Salix brachista HOM05D003200 ORTHO05D003574 3.1e-10 69.7 65 61.5
PGSC0003DMG400024057 Solanum tuberosum HOM05D003200 ORTHO05D003574 3.1e-10 69.7 167 34.7
ClCG09G003790 Citrullus lanatus HOM05D003200 ORTHO05D003574 4.0e-10 69.3 110 45.5
Gorai.009G070100 Gossypium raimondii HOM05D003200 ORTHO05D003574 4.0e-10 69.3 109 43.1
Lsat_1_v5_gn_6_49141 Lactuca sativa HOM05D003200 ORTHO05D003574 4.0e-10 69.3 158 38.0
Sabra01G0008800 Salix brachista HOM05D003200 ORTHO05D003574 4.0e-10 69.3 65 63.1
BcaB08g36558 Brassica carinata HOM05D003200 ORTHO05D003574 6.9e-10 68.6 111 44.1
CsaV3_4G023690 Cucumis sativus L. HOM05D003200 ORTHO05D003574 6.9e-10 68.6 136 41.9
Nitab4.5_0003436g0110 Nicotiana tabacum HOM05D003200 ORTHO05D003574 6.9e-10 68.6 134 38.8
THA.LOC104799746 Tarenaya hassleriana HOM05D003200 ORTHO05D003574 6.9e-10 68.6 65 56.9
TWI34G0579 Tripterygium wilfordii HOM05D003200 ORTHO05D003574 6.9e-10 68.6 109 42.2
GSVIVG01025369001 Vitis vinifera HOM05D003200 ORTHO05D003574 6.9e-10 68.6 81 54.3
Gohir.A05G066600 Gossypium hirsutum HOM05D003200 ORTHO05D003574 9.0e-10 68.2 109 44.0
Oeu058542.1 Olea europaea HOM05D003200 ORTHO05D003574 9.0e-10 68.2 138 39.1
MSTRG.18395 Avicennia marina HOM05D003200 ORTHO05D003574 1.2e-09 67.8 194 31.4
Duzib150G1584 Durio zibethinus HOM05D003200 ORTHO05D003574 1.2e-09 67.8 115 44.3
Nitab4.5_0005041g0060 Nicotiana tabacum HOM05D003200 ORTHO05D003574 1.2e-09 67.8 124 41.9
Oeu043308.3 Olea europaea HOM05D003200 ORTHO05D003574 1.2e-09 67.8 137 39.4
Sopen01g010160 Solanum pennellii HOM05D003200 ORTHO05D003574 1.2e-09 67.8 168 35.1
A02p05900 Brassica napus HOM05D003200 ORTHO05D003574 1.5e-09 67.4 68 55.9
BraA02t05542Z Brassica rapa HOM05D003200 ORTHO05D003574 1.5e-09 67.4 68 55.9
SalBow7G0874 Salvia bowleyana HOM05D003200 ORTHO05D003574 1.5e-09 67.4 131 38.2
SalBow7G4053 Salvia bowleyana HOM05D003200 ORTHO05D003574 1.5e-09 67.4 131 38.2
BolC2t06994H Brassica oleracea HOM05D003200 ORTHO05D003574 2.0e-09 67.0 69 55.1
ECA248G1666 Erigeron canadensis HOM05D003200 ORTHO05D003574 2.0e-09 67.0 149 36.9
Aa31LG1G13220 Aethionema arabicum HOM05D003200 ORTHO05D003574 2.6e-09 66.6 64 56.2
A03p09700 Brassica napus HOM05D003200 ORTHO05D003574 2.6e-09 66.6 68 57.4
BNapus_Darmor_BZH_scaffold_38p01970 Brassica napus HOM05D003200 ORTHO05D003574 2.6e-09 66.6 69 55.1
BcaC04g19396 Brassica carinata HOM05D003200 ORTHO05D003574 4.5e-09 65.9 67 58.2
A10p19820 Brassica napus HOM05D003200 ORTHO05D003574 4.5e-09 65.9 67 58.2
C09p56140 Brassica napus HOM05D003200 ORTHO05D003574 4.5e-09 65.9 67 58.2
BolC9t58481H Brassica oleracea HOM05D003200 ORTHO05D003574 4.5e-09 65.9 67 58.2
BraA10t44058Z Brassica rapa HOM05D003200 ORTHO05D003574 4.5e-09 65.9 67 58.2
Cc01_g03340 Coffea canephora HOM05D003200 ORTHO05D003574 4.5e-09 65.9 71 56.3
Gohir.D08G088300 Gossypium hirsutum HOM05D003200 ORTHO05D003574 4.5e-09 65.9 165 35.8
QL01p009941 Quercus lobata HOM05D003200 ORTHO05D003574 4.5e-09 65.9 126 38.9
BcaB01g04823 Brassica carinata HOM05D003200 ORTHO05D003574 5.8e-09 65.5 67 56.7
C03p11280 Brassica napus HOM05D003200 ORTHO05D003574 5.8e-09 65.5 67 56.7
BolC3t13598H Brassica oleracea HOM05D003200 ORTHO05D003574 5.8e-09 65.5 67 56.7
BraA03t10286Z Brassica rapa HOM05D003200 ORTHO05D003574 5.8e-09 65.5 67 56.7
AUR62000043 Chenopodium quinoa HOM05D003200 ORTHO05D003574 9.9e-09 64.7 138 40.6
Gorai.004G092700 Gossypium raimondii HOM05D003200 ORTHO05D003574 9.9e-09 64.7 165 35.2
Gohir.A08G078400 Gossypium hirsutum HOM05D003200 ORTHO05D003574 1.3e-08 64.3 109 43.1
Sed0009987 Sechium edule HOM05D003200 ORTHO05D003574 1.3e-08 64.3 77 53.2
Atru.chr3.2127 Acer truncatum HOM05D003200 ORTHO05D003574 1.7e-08 63.9 106 40.6
Atru.chr3.2140 Acer truncatum HOM05D003200 ORTHO05D003574 1.7e-08 63.9 106 40.6
AUR62019213 Chenopodium quinoa HOM05D003200 ORTHO05D003574 1.7e-08 63.9 138 42.8
SalBow2G0964 Salvia bowleyana HOM05D003200 ORTHO05D003574 4.9e-08 62.4 130 36.9
Duzib170G0875 Durio zibethinus HOM05D003200 ORTHO05D003574 6.4e-08 62.0 72 54.2
ECA233G5951 Erigeron canadensis HOM05D003200 ORTHO05D003574 6.4e-08 62.0 70 54.3
Eucgr.B03639 Eucalyptus grandis HOM05D003200 ORTHO05D003574 1.4e-07 60.8 54 64.8
MSTRG.17558 Avicennia marina HOM05D003200 ORTHO05D003574 9.3e-07 58.2 77 49.4
Potri.003G214300 Populus trichocarpa HOM05D003200 ORTHO05D003574 1.6e-06 57.4 55 61.8
SGA_v2.0_scaffold8G04634 Striga asiatica HOM05D003200 ORTHO05D003574 2.7e-06 56.6 162 31.5
unitig_26.g10121 Utricularia gibba HOM05D003200 ORTHO05D003574 4.6e-06 55.8 164 32.3
SalBow2G1492 Salvia bowleyana HOM05D003200 ORTHO05D003574 6.0e-06 55.5 136 35.3
SalBow2G2949 Salvia bowleyana HOM05D003200 ORTHO05D003574 6.0e-06 55.5 136 35.3
SGA_v2.0_scaffold1G00760 Striga asiatica HOM05D003200 ORTHO05D003574 6.0e-06 55.5 97 40.2
Zm00001eb190550 Zea mays HOM05D003200 ORTHO05D003574 7.9e-06 55.1 152 35.5


User provided reference genes

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