Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_008364 Vanilla planifolia HOM05D004801 ORTHO05D005747 3.4e-110 401.7 211 100.0
Sed0013547 Sechium edule HOM05D004801 ORTHO05D005747 1.7e-32 143.7 218 44.5
COL.COLO4_30200 Corchorus olitorius HOM05D004801 ORTHO05D005747 8.2e-32 141.4 162 49.4
Duzib132G1264 Durio zibethinus HOM05D004801 ORTHO05D005747 8.2e-32 141.4 159 49.7
ClCG00G003550 Citrullus lanatus HOM05D004801 ORTHO05D005747 1.1e-31 141.0 167 50.3
ClCG07G002870 Citrullus lanatus HOM05D004801 ORTHO05D005747 1.1e-31 141.0 167 50.3
SGA_v2.0_scaffold70G23526 Striga asiatica HOM05D004801 ORTHO05D005747 1.1e-31 141.0 227 42.3
ECA234G0944 Erigeron canadensis HOM05D004801 ORTHO05D005747 1.4e-31 140.6 189 47.1
MELO3C018732.2 Cucumis melo HOM05D004801 ORTHO05D005747 1.8e-31 140.2 170 48.2
AUR62022461 Chenopodium quinoa HOM05D004801 ORTHO05D005747 2.4e-31 139.8 187 45.5
Cc05_g07190 Coffea canephora HOM05D004801 ORTHO05D005747 3.1e-31 139.4 158 51.9
Gorai.012G128300 Gossypium raimondii HOM05D004801 ORTHO05D005747 3.1e-31 139.4 95 72.6
CsaV3_7G004470 Cucumis sativus L. HOM05D004801 ORTHO05D005747 5.3e-31 138.7 232 40.5
DCAR_013013 Daucus carota HOM05D004801 ORTHO05D005747 5.3e-31 138.7 209 43.1
Gohir.A03G156300 Gossypium hirsutum HOM05D004801 ORTHO05D005747 5.3e-31 138.7 158 48.7
Sc21g0002890 Simmondsia chinensis HOM05D004801 ORTHO05D005747 5.3e-31 138.7 209 45.0
Gorai.005G201200 Gossypium raimondii HOM05D004801 ORTHO05D005747 6.9e-31 138.3 157 50.3
Thecc.02G180400 Theobroma cacao HOM05D004801 ORTHO05D005747 6.9e-31 138.3 161 50.9
MSTRG.14326 Avicennia marina HOM05D004801 ORTHO05D005747 9.1e-31 137.9 152 49.3
Gohir.D04G142900 Gossypium hirsutum HOM05D004801 ORTHO05D005747 9.1e-31 137.9 95 71.6
MBI18_g28947_MAGBIO Magnolia biondii HOM05D004801 ORTHO05D005747 1.2e-30 137.5 191 49.7
Hma1.2p1_0002F.1_g001940 Hydrangea macrophylla HOM05D004801 ORTHO05D005747 1.5e-30 137.1 227 43.2
Gohir.A04G103500 Gossypium hirsutum HOM05D004801 ORTHO05D005747 2.0e-30 136.7 95 71.6
Dinv23632 Davidia involucrata HOM05D004801 ORTHO05D005747 2.6e-30 136.3 213 44.1
Duzib248G0607 Durio zibethinus HOM05D004801 ORTHO05D005747 2.6e-30 136.3 158 50.0
Oeu019133.1 Olea europaea HOM05D004801 ORTHO05D005747 2.6e-30 136.3 230 41.3
CiPaw.03G177800 Carya illinoinensis HOM05D004801 ORTHO05D005747 5.9e-30 135.2 196 43.4
QL08p038965 Quercus lobata HOM05D004801 ORTHO05D005747 7.7e-30 134.8 193 43.0
Sed0002865 Sechium edule HOM05D004801 ORTHO05D005747 7.7e-30 134.8 95 65.3
SGA_v2.0_scaffold34G13950 Striga asiatica HOM05D004801 ORTHO05D005747 1.0e-29 134.4 212 42.5
GSVIVG01020552001 Vitis vinifera HOM05D004801 ORTHO05D005747 1.0e-29 134.4 92 70.7
Cfa014619 Carpinus fangiana HOM05D004801 ORTHO05D005747 1.3e-29 134.0 228 41.7
HanXRQChr17g0559281 Helianthus annuus HOM05D004801 ORTHO05D005747 1.3e-29 134.0 238 40.8
MD17G1239900 Malus domestica HOM05D004801 ORTHO05D005747 1.3e-29 134.0 163 47.9
TAR626G1782 Trochodendron aralioides HOM05D004801 ORTHO05D005747 1.3e-29 134.0 166 48.2
Ah.08g215280 Amaranthus hybridus HOM05D004801 ORTHO05D005747 1.7e-29 133.7 212 44.3
Lsat_1_v5_gn_8_135921 Lactuca sativa HOM05D004801 ORTHO05D005747 1.7e-29 133.7 95 65.3
EL10Ac9g20770 Beta vulgaris HOM05D004801 ORTHO05D005747 2.2e-29 133.3 84 73.8
CSS0019593 Camellia sinensis var. sinensis HOM05D004801 ORTHO05D005747 2.2e-29 133.3 77 77.9
Lalb_Chr24g0399901 Lupinus albus HOM05D004801 ORTHO05D005747 2.2e-29 133.3 163 43.6
Sopen10g004180 Solanum pennellii HOM05D004801 ORTHO05D005747 2.2e-29 133.3 215 41.9
Haze_13169 Corylus avellana HOM05D004801 ORTHO05D005747 2.9e-29 132.9 235 40.9
Glyma.12G204600 Glycine max HOM05D004801 ORTHO05D005747 2.9e-29 132.9 223 40.4
Manes.13G146300 Manihot esculenta HOM05D004801 ORTHO05D005747 2.9e-29 132.9 171 46.8
Rhsim06G0141800 Rhododendron simsii HOM05D004801 ORTHO05D005747 2.9e-29 132.9 96 68.8
PGSC0003DMG400013144 Solanum tuberosum HOM05D004801 ORTHO05D005747 2.9e-29 132.9 197 47.2
vmacro12308 Vaccinium macrocarpon HOM05D004801 ORTHO05D005747 2.9e-29 132.9 219 43.4
VMungo0464G1438 Vigna mungo HOM05D004801 ORTHO05D005747 2.9e-29 132.9 83 71.1
Solyc10g008320.1 Solanum lycopersicum HOM05D004801 ORTHO05D005747 3.8e-29 132.5 214 41.1
Dinv26411 Davidia involucrata HOM05D004801 ORTHO05D005747 8.5e-29 131.3 77 79.2
SHI10398 Sapria himalayana HOM05D004801 ORTHO05D005747 1.1e-28 131.0 177 46.9
TWI36G1772 Tripterygium wilfordii HOM05D004801 ORTHO05D005747 1.1e-28 131.0 239 39.3
unitig_46.g18595 Utricularia gibba HOM05D004801 ORTHO05D005747 1.1e-28 131.0 225 39.1
Migut.M00296 Erythranthe guttata HOM05D004801 ORTHO05D005747 1.4e-28 130.6 205 42.0
Peaxi162Scf00059g00194 Petunia axillaris HOM05D004801 ORTHO05D005747 1.4e-28 130.6 154 50.6
arahy.Tifrunner.gnm1.ann1.G6M6JD Arachis hypogaea HOM05D004801 ORTHO05D005747 1.9e-28 130.2 92 67.4
CAN.G578.5 Capsicum annuum HOM05D004801 ORTHO05D005747 2.5e-28 129.8 89 70.8
Actinidia11029 Actinidia chinensis HOM05D004801 ORTHO05D005747 3.2e-28 129.4 236 41.1
arahy.Tifrunner.gnm1.ann1.KJ31KE Arachis hypogaea HOM05D004801 ORTHO05D005747 3.2e-28 129.4 91 67.0
Lalb_Chr14g0366971 Lupinus albus HOM05D004801 ORTHO05D005747 3.2e-28 129.4 161 46.6
Atru.chr6.2990 Acer truncatum HOM05D004801 ORTHO05D005747 4.2e-28 129.0 196 41.3
Glyma.13G296700 Glycine max HOM05D004801 ORTHO05D005747 4.2e-28 129.0 210 40.0
Lj3g0028176 Lotus japonicus HOM05D004801 ORTHO05D005747 5.5e-28 128.6 217 38.2
Nitab4.5_0000585g0130 Nicotiana tabacum HOM05D004801 ORTHO05D005747 5.5e-28 128.6 94 66.0
FAN02G2956 Fragaria x ananassa HOM05D004801 ORTHO05D005747 9.4e-28 127.9 145 50.3
VMungo0464G0320 Vigna mungo HOM05D004801 ORTHO05D005747 9.4e-28 127.9 214 38.3
Sabra13G0110300 Salix brachista HOM05D004801 ORTHO05D005747 1.2e-27 127.5 89 68.5
Phvul.004G108100 Phaseolus vulgaris HOM05D004801 ORTHO05D005747 1.6e-27 127.1 160 44.4
RcHm_v2.0_Chr2g0126621 Rosa chinensis HOM05D004801 ORTHO05D005747 3.6e-27 125.9 205 43.9
MSTRG.12824 Avicennia marina HOM05D004801 ORTHO05D005747 4.7e-27 125.6 182 42.9
Gohir.D02G179400 Gossypium hirsutum HOM05D004801 ORTHO05D005747 6.1e-27 125.2 164 45.7
Potri.013G130700 Populus trichocarpa HOM05D004801 ORTHO05D005747 7.9e-27 124.8 89 66.3
Ciclev10016785m.g Citrus clementina HOM05D004801 ORTHO05D005747 1.0e-26 124.4 179 43.0
FvH4_6g26250 Fragaria vesca HOM05D004801 ORTHO05D005747 1.0e-26 124.4 180 45.6
Nitab4.5_0000638g0250 Nicotiana tabacum HOM05D004801 ORTHO05D005747 1.0e-26 124.4 188 43.6
Nitab4.5_0014741g0010 Nicotiana tabacum HOM05D004801 ORTHO05D005747 1.4e-26 124.0 177 44.6
PGR042G3918 Punica granatum HOM05D004801 ORTHO05D005747 1.4e-26 124.0 86 74.4
Aqoxy4G01981 Aquilegia oxysepala HOM05D004801 ORTHO05D005747 1.8e-26 123.6 85 67.1
BcaNung01577 Brassica carinata HOM05D004801 ORTHO05D005747 3.0e-26 122.9 190 42.6
unitig_37.g12306 Utricularia gibba HOM05D004801 ORTHO05D005747 3.0e-26 122.9 248 35.1
PSO170G5688 Papaver somniferum HOM05D004801 ORTHO05D005747 3.9e-26 122.5 105 60.0
PSO357G0555 Papaver somniferum HOM05D004801 ORTHO05D005747 3.9e-26 122.5 265 37.0
SalBow1G6004 Salvia bowleyana HOM05D004801 ORTHO05D005747 5.1e-26 122.1 211 39.8
AT4G28310 Arabidopsis thaliana HOM05D004801 ORTHO05D005747 6.7e-26 121.7 204 40.2
Nitab4.5_0011784g0010 Nicotiana tabacum HOM05D004801 ORTHO05D005747 6.7e-26 121.7 216 39.8
AUR62040063 Chenopodium quinoa HOM05D004801 ORTHO05D005747 8.8e-26 121.3 211 42.2
Eucgr.A01822 Eucalyptus grandis HOM05D004801 ORTHO05D005747 8.8e-26 121.3 194 43.3
FAN09G3815 Fragaria x ananassa HOM05D004801 ORTHO05D005747 8.8e-26 121.3 198 40.4
Phvul.004G108200 Phaseolus vulgaris HOM05D004801 ORTHO05D005747 8.8e-26 121.3 213 37.1
C01p24790 Brassica napus HOM05D004801 ORTHO05D005747 2.0e-25 120.2 98 61.2
Glyma.12G204500 Glycine max HOM05D004801 ORTHO05D005747 2.0e-25 120.2 214 37.9
Zm00001eb269130 Zea mays HOM05D004801 ORTHO05D005747 3.3e-25 119.4 112 57.1
Sp7g26270 Schrenkiella parvula HOM05D004801 ORTHO05D005747 5.7e-25 118.6 159 44.0
BcaB03g12566 Brassica carinata HOM05D004801 ORTHO05D005747 7.4e-25 118.2 209 38.3
Cpa.g.sc34.170 Carica papaya HOM05D004801 ORTHO05D005747 7.4e-25 118.2 190 43.2
Thhalv10027270m.g Eutrema salsugineum HOM05D004801 ORTHO05D005747 7.4e-25 118.2 192 39.6
THA.LOC104824700 Tarenaya hassleriana HOM05D004801 ORTHO05D005747 7.4e-25 118.2 203 37.9
Aa31LG10G480 Aethionema arabicum HOM05D004801 ORTHO05D005747 9.7e-25 117.9 198 38.9
BraA08t33972Z Brassica rapa HOM05D004801 ORTHO05D005747 9.7e-25 117.9 195 40.0
Lsat_1_v5_gn_8_135941 Lactuca sativa HOM05D004801 ORTHO05D005747 9.7e-25 117.9 68 76.5
BraA01t01904Z Brassica rapa HOM05D004801 ORTHO05D005747 1.3e-24 117.5 180 42.8
Os06g0115700 Oryza sativa ssp. japonica HOM05D004801 ORTHO05D005747 1.7e-24 117.1 74 75.7
SalBow1G1046 Salvia bowleyana HOM05D004801 ORTHO05D005747 1.7e-24 117.1 211 38.9
Aa31LG2G22170 Aethionema arabicum HOM05D004801 ORTHO05D005747 2.2e-24 116.7 200 38.0
BcaC07g38324 Brassica carinata HOM05D004801 ORTHO05D005747 2.2e-24 116.7 187 38.5
C08p10790 Brassica napus HOM05D004801 ORTHO05D005747 2.2e-24 116.7 187 38.5
A08p20130 Brassica napus HOM05D004801 ORTHO05D005747 2.8e-24 116.3 195 41.5
Peaxi162Scf00132g00008 Petunia axillaris HOM05D004801 ORTHO05D005747 2.8e-24 116.3 208 43.8
BolC8t48753H Brassica oleracea HOM05D004801 ORTHO05D005747 3.7e-24 115.9 196 39.3
BcaC09g50492 Brassica carinata HOM05D004801 ORTHO05D005747 4.8e-24 115.5 192 39.6
Glyma.13G296800 Glycine max HOM05D004801 ORTHO05D005747 4.8e-24 115.5 105 55.2
BolC1t02426H Brassica oleracea HOM05D004801 ORTHO05D005747 8.2e-24 114.8 192 40.1
CARHR236030 Cardamine hirsuta HOM05D004801 ORTHO05D005747 1.4e-23 114.0 196 38.3
AL7G24290 Arabidopsis lyrata HOM05D004801 ORTHO05D005747 7.0e-23 111.7 201 38.3
Prupe.3G132500 Prunus persica HOM05D004801 ORTHO05D005747 7.0e-23 111.7 191 39.8
Sopen07g027930 Solanum pennellii HOM05D004801 ORTHO05D005747 9.1e-23 111.3 211 37.9
PGSC0003DMG400018341 Solanum tuberosum HOM05D004801 ORTHO05D005747 9.1e-23 111.3 124 52.4
TPR.G6396 Trifolium pratense HOM05D004801 ORTHO05D005747 2.6e-22 109.8 180 40.0
BcaC06g32627 Brassica carinata HOM05D004801 ORTHO05D005747 5.9e-22 108.6 191 38.7
BcaC06g32628 Brassica carinata HOM05D004801 ORTHO05D005747 5.9e-22 108.6 191 38.7
Ca_01496_v3 Cicer arietinum L. HOM05D004801 ORTHO05D005747 5.9e-22 108.6 156 41.7
Medtr2g090385 Medicago truncatula HOM05D004801 ORTHO05D005747 1.0e-21 107.8 88 60.2
SEGI_29524 Sequoiadendron giganteum HOM05D004801 ORTHO05D005747 1.7e-21 107.1 217 37.3
CSS0042810 Camellia sinensis var. sinensis HOM05D004801 ORTHO05D005747 5.0e-21 105.5 174 41.4
Carub.0007s1244 Capsella rubella HOM05D004801 ORTHO05D005747 5.0e-21 105.5 202 35.6
Lj1P721T18 Lonicera japonica HOM05D004801 ORTHO05D005747 1.5e-20 104.0 67 71.6
Solyc07g053950.1 Solanum lycopersicum HOM05D004801 ORTHO05D005747 1.5e-20 104.0 211 37.9
A03p58010 Brassica napus HOM05D004801 ORTHO05D005747 2.7e-19 99.8 184 36.4
BraA03t14864Z Brassica rapa HOM05D004801 ORTHO05D005747 2.7e-19 99.8 184 36.4
C07p56130 Brassica napus HOM05D004801 ORTHO05D005747 8.0e-19 98.2 103 51.5
ATR0124G030 Amborella trichopoda HOM05D004801 ORTHO05D005747 1.0e-18 97.8 225 33.8
Psat5g270840 Pisum sativum HOM05D004801 ORTHO05D005747 1.0e-18 97.8 173 38.2
Mapoly0078s0017 Marchantia polymorpha HOM05D004801 ORTHO05D005747 1.8e-18 97.1 134 41.0
Psat5g272360 Pisum sativum HOM05D004801 ORTHO05D005747 1.8e-18 97.1 88 54.5
BolC7t46088H Brassica oleracea HOM05D004801 ORTHO05D005747 1.7e-16 90.5 175 36.0
Pp3c14_12710 Physcomitrium patens HOM05D004801 ORTHO05D005747 1.8e-15 87.0 125 40.8
AagrBONN_evm.TU.Sc2ySwM_344.3370 Anthoceros agrestis HOM05D004801 ORTHO05D005747 3.1e-15 86.3 80 55.0
Pp3c17_13330 Physcomitrium patens HOM05D004801 ORTHO05D005747 1.2e-14 84.3 143 37.8
BcaNung01357 Brassica carinata HOM05D004801 ORTHO05D005747 3.6e-11 72.8 202 33.2
AT1G52270 Arabidopsis thaliana HOM05D004801 ORTHO05D005747 1.4e-07 60.8 43 60.5
SalBow7G4186 Salvia bowleyana HOM05D000074 ORTHO05D000220 3.1e-07 59.7 32 81.2
BcaC08g44096 Brassica carinata HOM05D004801 ORTHO05D005747 4.5e-06 55.8 63 49.2


User provided reference genes

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