Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_008257 Vanilla planifolia HOM05D002030 ORTHO05D007413 2.1e-277 958.4 480 100.0
Nn7g36615 Nelumbo nucifera HOM05D002030 ORTHO05D007413 2.0e-158 563.1 455 60.0
TAR628G0894 Trochodendron aralioides HOM05D002030 ORTHO05D007413 1.5e-153 547.0 451 58.3
MBI03_g13094_MAGBIO Magnolia biondii HOM05D002030 ORTHO05D007413 8.1e-152 541.2 456 58.3
Aqoxy1G00344 Aquilegia oxysepala HOM05D002030 ORTHO05D007413 3.1e-151 539.3 453 58.3
Dinv05065 Davidia involucrata HOM05D002030 ORTHO05D007413 4.0e-151 538.9 452 57.5
CSS0026005 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D007413 1.2e-147 527.3 473 53.9
CSS0014605 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D007413 3.5e-147 525.8 457 54.9
Hma1.2p1_0872F.1_g231160 Hydrangea macrophylla HOM05D002030 ORTHO05D007413 1.9e-145 520.0 456 55.0
Nitab4.5_0002358g0010 Nicotiana tabacum HOM05D002030 ORTHO05D007413 4.3e-145 518.8 455 54.9
CANSAT25G2826 Cannabis sativa HOM05D002030 ORTHO05D007413 1.3e-144 517.3 468 54.5
Duzib168G1726 Durio zibethinus HOM05D002030 ORTHO05D007413 1.1e-143 514.2 464 52.8
Cpa.g.sc529.1 Carica papaya HOM05D002030 ORTHO05D007413 2.4e-143 513.1 456 56.1
Prupe.1G578000 Prunus persica HOM05D002030 ORTHO05D007413 2.4e-143 513.1 456 54.8
ATR0693G336 Amborella trichopoda HOM05D002030 ORTHO05D007413 3.1e-143 512.7 453 55.8
Rhsim13G0212600 Rhododendron simsii HOM05D002030 ORTHO05D007413 5.3e-143 511.9 458 53.5
MD11G1194100 Malus domestica HOM05D002030 ORTHO05D007413 6.9e-143 511.5 456 54.6
Atru.chr3.2803 Acer truncatum HOM05D002030 ORTHO05D007413 2.6e-142 509.6 456 54.8
RcHm_v2.0_Chr6g0267091 Rosa chinensis HOM05D002030 ORTHO05D007413 3.4e-142 509.2 457 53.2
CAN.G993.31 Capsicum annuum HOM05D002030 ORTHO05D007413 5.8e-142 508.4 455 53.8
PGSC0003DMG401026992 Solanum tuberosum HOM05D002030 ORTHO05D007413 7.6e-142 508.1 451 53.9
PSO384G3354 Papaver somniferum HOM05D002030 ORTHO05D007413 1.3e-141 507.3 477 51.6
Lalb_Chr02g0151181 Lupinus albus HOM05D002030 ORTHO05D007413 2.9e-141 506.1 460 54.3
Oeu024896.1 Olea europaea HOM05D002030 ORTHO05D007413 4.9e-141 505.4 474 53.0
Sabra16G0171300 Salix brachista HOM05D002030 ORTHO05D007413 6.4e-141 505.0 476 52.1
MSTRG.19666 Avicennia marina HOM05D002030 ORTHO05D007413 8.4e-141 504.6 457 52.5
Ciclev10018312m.g Citrus clementina HOM05D002030 ORTHO05D007413 1.9e-140 503.4 452 54.4
PSO339G1606 Papaver somniferum HOM05D002030 ORTHO05D007413 1.9e-140 503.4 469 51.2
Solyc06g071630.2 Solanum lycopersicum HOM05D002030 ORTHO05D007413 3.2e-140 502.7 451 54.1
Sopen06g027940 Solanum pennellii HOM05D002030 ORTHO05D007413 3.2e-140 502.7 451 53.4
Potri.001G277200 Populus trichocarpa HOM05D002030 ORTHO05D007413 4.2e-140 502.3 457 52.7
Lsat_1_v5_gn_5_164660 Lactuca sativa HOM05D002030 ORTHO05D007413 5.4e-140 501.9 457 54.9
Haze_02982 Corylus avellana HOM05D002030 ORTHO05D007413 7.1e-140 501.5 458 53.5
COL.COLO4_33273 Corchorus olitorius HOM05D002030 ORTHO05D007413 1.2e-139 500.7 475 52.4
MD15G1397300 Malus domestica HOM05D002030 ORTHO05D007413 1.6e-139 500.4 448 53.6
Gohir.A05G071600 Gossypium hirsutum HOM05D002030 ORTHO05D007413 2.1e-139 500.0 464 52.2
QL04p021544 Quercus lobata HOM05D002030 ORTHO05D007413 2.7e-139 499.6 458 53.3
TWI09G0205 Tripterygium wilfordii HOM05D002030 ORTHO05D007413 6.0e-139 498.4 452 53.5
Manes.02G141000 Manihot esculenta HOM05D002030 ORTHO05D007413 1.3e-138 497.3 466 52.8
CiPaw.06G055000 Carya illinoinensis HOM05D002030 ORTHO05D007413 5.1e-138 495.4 458 53.1
FvH4_3g28960 Fragaria vesca HOM05D002030 ORTHO05D007413 5.1e-138 495.4 456 53.5
Migut.J01395 Erythranthe guttata HOM05D002030 ORTHO05D007413 6.6e-138 495.0 463 52.3
SHI24995 Sapria himalayana HOM05D002030 ORTHO05D007413 8.7e-138 494.6 456 52.6
Cfa010958 Carpinus fangiana HOM05D002030 ORTHO05D007413 1.1e-137 494.2 458 52.6
Cfa019819 Carpinus fangiana HOM05D002030 ORTHO05D007413 1.1e-137 494.2 458 52.6
EL10Ac4g10126 Beta vulgaris HOM05D002030 ORTHO05D007413 7.3e-137 491.5 477 51.2
EL10Ac4g10162 Beta vulgaris HOM05D002030 ORTHO05D007413 7.3e-137 491.5 477 51.2
AUR62039829 Chenopodium quinoa HOM05D002030 ORTHO05D004391 1.6e-136 490.3 456 53.1
Peaxi162Scf00108g00034 Petunia axillaris HOM05D002030 ORTHO05D007413 1.6e-136 490.3 457 54.5
CsaV3_1G043250 Cucumis sativus L. HOM05D002030 ORTHO05D007413 2.8e-136 489.6 462 54.1
Cc01_g00100 Coffea canephora HOM05D002030 ORTHO05D007413 4.8e-136 488.8 455 53.2
HanXRQChr10g0319281 Helianthus annuus HOM05D002030 ORTHO05D007413 4.8e-136 488.8 456 53.9
SGA_v2.0_scaffold45G17005 Striga asiatica HOM05D002030 ORTHO05D007413 8.1e-136 488.0 457 51.2
Lj4P151T58 Lonicera japonica HOM05D002030 ORTHO05D007413 9.0e-135 484.6 471 52.7
MELO3C015133.2 Cucumis melo HOM05D002030 ORTHO05D007413 1.5e-134 483.8 452 54.2
Psat4g003440 Pisum sativum HOM05D002030 ORTHO05D007413 7.6e-134 481.5 455 52.7
Gorai.009G075600 Gossypium raimondii HOM05D002030 ORTHO05D007413 1.3e-133 480.7 464 51.3
arahy.Tifrunner.gnm1.ann1.DSBP33 Arachis hypogaea HOM05D002030 ORTHO05D007413 2.9e-133 479.6 464 50.6
ClCG03G012710 Citrullus lanatus HOM05D002030 ORTHO05D007413 6.4e-133 478.4 462 53.5
Ah.04g162000 Amaranthus hybridus HOM05D002030 ORTHO05D007413 3.2e-132 476.1 454 50.4
arahy.Tifrunner.gnm1.ann1.59T0PU Arachis hypogaea HOM05D002030 ORTHO05D007413 4.2e-132 475.7 464 50.4
THA.LOC104800445 Tarenaya hassleriana HOM05D002030 ORTHO05D007413 4.2e-132 475.7 452 50.9
Sc19g0005890 Simmondsia chinensis HOM05D002030 ORTHO05D007413 3.5e-131 472.6 457 51.0
Lj5g0021026 Lotus japonicus HOM05D002030 ORTHO05D007413 7.9e-131 471.5 448 52.2
Phvul.007G141800 Phaseolus vulgaris HOM05D002030 ORTHO05D007413 1.8e-130 470.3 449 52.1
Medtr4g132910 Medicago truncatula HOM05D002030 ORTHO05D007413 2.5e-129 466.5 449 51.7
VMungo0720G1521 Vigna mungo HOM05D002030 ORTHO05D007413 1.6e-128 463.8 449 51.4
RcHm_v2.0_Chr2g0127281 Rosa chinensis HOM05D002030 ORTHO05D007413 1.1e-127 461.1 457 48.6
Thecc.09G250300 Theobroma cacao HOM05D002030 ORTHO05D007413 7.9e-123 444.9 382 55.0
unitig_0.g561 Utricularia gibba HOM05D002030 ORTHO05D007413 7.9e-123 444.9 451 46.3
AUR62000179 Chenopodium quinoa HOM05D002030 ORTHO05D007413 1.5e-121 440.7 455 49.9
Carub.0007s2761 Capsella rubella HOM05D002030 ORTHO05D007413 1.4e-119 434.1 456 47.8
Sp7g12690 Schrenkiella parvula HOM05D002030 ORTHO05D007413 5.3e-119 432.2 467 47.1
Aa31LG9G2740 Aethionema arabicum HOM05D002030 ORTHO05D007413 2.6e-118 429.9 465 46.0
AL7G41540 Arabidopsis lyrata HOM05D002030 ORTHO05D007413 1.0e-117 427.9 467 45.6
BolC3t14628H Brassica oleracea HOM05D002030 ORTHO05D007413 6.5e-117 425.2 449 47.7
Thhalv10027440m.g Eutrema salsugineum HOM05D002030 ORTHO05D007413 6.5e-117 425.2 457 47.3
C03p22450 Brassica napus HOM05D002030 ORTHO05D007413 1.4e-116 424.1 449 47.4
Mapoly0033s0111 Marchantia polymorpha HOM05D002030 ORTHO05D007413 1.4e-116 424.1 462 46.1
BraA03t11180Z Brassica rapa HOM05D002030 ORTHO05D007413 2.1e-115 420.2 449 47.2
A03p19250 Brassica napus HOM05D002030 ORTHO05D007413 6.1e-115 418.7 449 47.2
CARHR220820 Cardamine hirsuta HOM05D002030 ORTHO05D007413 1.3e-114 417.5 457 44.9
Thhalv10017599m.g Eutrema salsugineum HOM05D002030 ORTHO05D007413 1.9e-113 413.7 457 45.5
AagrBONN_evm.TU.Sc2ySwM_368.2374 Anthoceros agrestis HOM05D002030 ORTHO05D007413 2.5e-113 413.3 465 45.2
Glyma.20G191000 Glycine max HOM05D002030 ORTHO05D007413 9.7e-113 411.4 465 46.2
AT4G14590 Arabidopsis thaliana HOM05D002030 ORTHO05D007413 1.6e-112 410.6 473 45.2
PGR102G2312 Punica granatum HOM05D002030 ORTHO05D007413 8.2e-112 408.3 459 45.5
SEGI_26527 Sequoiadendron giganteum HOM05D002030 ORTHO05D007413 1.1e-111 407.9 468 44.9
Ca_21049_v3 Cicer arietinum L. HOM05D002030 ORTHO05D007413 3.4e-110 402.9 448 47.3
Actinidia06954 Actinidia chinensis HOM05D002030 ORTHO05D007413 1.7e-109 400.6 333 57.1
Peaxi162Scf00177g00919 Petunia axillaris HOM05D002030 ORTHO05D007413 1.7e-109 400.6 356 56.7
Pp3c16_4000 Physcomitrium patens HOM05D002030 ORTHO05D007413 2.5e-108 396.7 470 44.3
CDE02G3397 Ceratophyllum demersum HOM05D002030 ORTHO05D007413 2.1e-107 393.7 305 61.0
TPR.G37056 Trifolium pratense HOM05D002030 ORTHO05D007413 6.3e-104 382.1 349 55.0
RcHm_v2.0_Chr6g0255981 Rosa chinensis HOM05D002030 ORTHO05D007413 1.1e-103 381.3 348 50.0
ECA248G2873 Erigeron canadensis HOM05D002030 ORTHO05D007413 4.1e-103 379.4 381 52.8
Rhsim13G0218500 Rhododendron simsii HOM05D002030 ORTHO05D007413 4.5e-102 375.9 457 43.8
BcaC08g44279 Brassica carinata HOM05D002030 ORTHO05D007413 2.7e-99 366.7 469 42.2
C06p16980 Brassica napus HOM05D002030 ORTHO05D007413 2.7e-99 366.7 469 42.2
arahy.Tifrunner.gnm1.ann1.G6N61A Arachis hypogaea HOM05D002030 ORTHO05D007413 1.7e-96 357.5 373 49.6
SMO141G0167 Selaginella moellendorffii HOM05D002030 ORTHO05D007413 4.1e-95 352.8 468 39.7
GSVIVG01037252001 Vitis vinifera HOM05D002030 ORTHO05D007413 2.0e-94 350.5 461 42.1
CBR_g18996 Chara braunii HOM05D002030 ORTHO05D007413 5.9e-94 349.0 469 39.0
Gohir.D05G074500 Gossypium hirsutum HOM05D002030 ORTHO05D007413 4.1e-87 326.2 275 57.5
PSO478G2842 Papaver somniferum HOM05D002030 ORTHO05D007413 2.7e-86 323.6 360 46.7
Eucgr.B03727 Eucalyptus grandis HOM05D002030 ORTHO05D007413 1.3e-85 321.2 445 40.2
Zm00001eb091720 Zea mays HOM05D002030 ORTHO05D007413 2.7e-75 287.0 337 43.9
Cc04_g16190 Coffea canephora HOM05D002030 ORTHO05D007413 2.8e-72 276.9 454 36.6
HanXRQChr14g0432371 Helianthus annuus HOM05D002030 ORTHO05D007413 1.8e-71 274.2 364 42.9
Os11g0171400 Oryza sativa ssp. japonica HOM05D002030 ORTHO05D007413 1.3e-64 251.5 259 48.3
CSS0011008 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D007413 1.5e-60 238.0 255 46.3
Sed0013906 Sechium edule HOM05D002030 ORTHO05D007413 1.2e-57 228.4 193 57.5
Nitab4.5_0001515g0060 Nicotiana tabacum HOM05D002030 ORTHO05D007413 2.2e-56 224.2 168 63.7
BolC6t36898H Brassica oleracea HOM05D002030 ORTHO05D007413 4.0e-50 203.4 467 31.0
BcaC01g05780 Brassica carinata HOM05D002030 ORTHO05D007413 3.3e-44 183.7 208 42.3
COL.COLO4_19604 Corchorus olitorius HOM05D002030 ORTHO05D007413 4.3e-44 183.3 194 44.8
Atru.chr1.1605 Acer truncatum HOM05D002030 ORTHO05D007413 8.9e-42 175.6 179 45.8
FAN21G2573 Fragaria x ananassa HOM05D002030 ORTHO05D007413 6.0e-38 162.9 181 45.9
BcaC01g05781 Brassica carinata HOM05D002030 ORTHO05D007413 1.8e-34 151.4 116 62.9
MD00G1154100 Malus domestica HOM05D002030 ORTHO05D007413 2.9e-32 144.1 115 59.1
DCAR_031630 Daucus carota HOM05D002030 ORTHO05D007413 4.9e-32 143.3 177 40.7
Nitab4.5_0001515g0100 Nicotiana tabacum HOM05D002030 ORTHO05D007413 4.3e-20 103.6 63 68.3
Glyma.10G199232 Glycine max HOM05D002030 ORTHO05D007413 6.9e-18 96.3 146 37.0
Medtr4g132950 Medicago truncatula HOM05D002030 ORTHO05D007413 4.9e-08 63.5 80 43.8
Sc16g0005130 Simmondsia chinensis HOM05D002030 ORTHO05D007413 7.1e-07 59.7 77 39.0
DCAR_031631 Daucus carota HOM05D002030 ORTHO05D007413 2.1e-06 58.2 61 47.5
Solyc12g010650.1 Solanum lycopersicum HOM05D000161 ORTHO05D000111 4.6e-06 57.0 43 48.8


User provided reference genes

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