Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_008243 Vanilla planifolia HOM05D005312 ORTHO05D006459 2.2e-126 455.7 233 100.0
MBI07_g40342_MAGBIO Magnolia biondii HOM05D005312 ORTHO05D006459 8.9e-80 300.8 232 69.4
Os11g0522000 Oryza sativa ssp. japonica HOM05D005312 ORTHO05D006459 2.0e-79 299.7 227 66.1
Zm00001eb170350 Zea mays HOM05D005312 ORTHO05D006459 2.4e-77 292.7 227 65.2
Nn4g22171 Nelumbo nucifera HOM05D005312 ORTHO05D006459 2.0e-71 273.1 239 61.1
CANSAT64G1152 Cannabis sativa HOM05D005312 ORTHO05D006459 5.8e-71 271.6 240 60.8
TAR629G1483 Trochodendron aralioides HOM05D005312 ORTHO05D006459 2.9e-70 269.2 241 62.7
Aqoxy5G03173 Aquilegia oxysepala HOM05D005312 ORTHO05D006459 2.7e-68 262.7 241 62.2
Cfa007172 Carpinus fangiana HOM05D005312 ORTHO05D006459 2.7e-68 262.7 228 62.7
Dinv33289 Davidia involucrata HOM05D005312 ORTHO05D006459 3.5e-68 262.3 233 60.9
Glyma.16G146900 Glycine max HOM05D005312 ORTHO05D006459 4.6e-68 261.9 237 62.4
Glyma.02G066000 Glycine max HOM05D005312 ORTHO05D006459 6.0e-68 261.5 236 61.9
Hma1.2p1_0868F.1_g230570 Hydrangea macrophylla HOM05D005312 ORTHO05D006459 7.8e-68 261.2 233 61.4
Ciclev10015374m.g Citrus clementina HOM05D005312 ORTHO05D006459 1.3e-67 260.4 238 59.2
CiPaw.03G003000 Carya illinoinensis HOM05D005312 ORTHO05D006459 1.7e-67 260.0 241 59.3
Cc07_g01210 Coffea canephora HOM05D005312 ORTHO05D006459 2.3e-67 259.6 238 61.8
CSS0036880 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 3.0e-67 259.2 227 63.0
QL02p069878 Quercus lobata HOM05D005312 ORTHO05D006459 3.0e-67 259.2 241 60.2
TAR371G0255 Trochodendron aralioides HOM05D005312 ORTHO05D006459 5.1e-67 258.5 237 60.8
Phvul.004G070300 Phaseolus vulgaris HOM05D005312 ORTHO05D006459 8.7e-67 257.7 236 61.0
vmacro22240 Vaccinium macrocarpon HOM05D005312 ORTHO05D006459 1.1e-66 257.3 237 59.1
MELO3C014806.2 Cucumis melo HOM05D005312 ORTHO05D006459 3.3e-66 255.8 233 60.9
Prupe.3G312600 Prunus persica HOM05D005312 ORTHO05D006459 3.3e-66 255.8 241 59.8
Sed0007531 Sechium edule HOM05D005312 ORTHO05D006459 3.3e-66 255.8 232 62.5
Nitab4.5_0025697g0010 Nicotiana tabacum HOM05D005312 ORTHO05D006459 7.3e-66 254.6 232 60.3
CAN.G473.156 Capsicum annuum HOM05D005312 ORTHO05D006459 1.6e-65 253.4 230 59.6
RcHm_v2.0_Chr2g0176401 Rosa chinensis HOM05D005312 ORTHO05D006459 1.6e-65 253.4 238 60.1
ClCG05G012720 Citrullus lanatus HOM05D005312 ORTHO05D006459 1.1e-64 250.8 232 59.1
Rhsim10G0001700 Rhododendron simsii HOM05D005312 ORTHO05D006459 1.4e-64 250.4 237 57.8
PGSC0003DMG400020194 Solanum tuberosum HOM05D005312 ORTHO05D006459 2.4e-64 249.6 231 59.7
Cpa.g.sc70.78 Carica papaya HOM05D005312 ORTHO05D006459 3.1e-64 249.2 235 58.7
Atru.chr6.2642 Acer truncatum HOM05D005312 ORTHO05D006459 5.3e-64 248.4 237 60.3
Lj2g0017210 Lotus japonicus HOM05D005312 ORTHO05D006459 5.3e-64 248.4 235 57.9
Peaxi162Scf00420g00087 Petunia axillaris HOM05D005312 ORTHO05D006459 5.3e-64 248.4 231 58.9
Solyc02g094480.4 Solanum lycopersicum HOM05D000001 ORTHO05D000003 6.9e-64 248.1 229 59.8
Sopen02g039150 Solanum pennellii HOM05D005312 ORTHO05D006459 6.9e-64 248.1 229 59.8
MSTRG.3045 Avicennia marina HOM05D005312 ORTHO05D006459 1.2e-63 247.3 236 56.8
COL.COLO4_13349 Corchorus olitorius HOM05D005312 ORTHO05D006459 2.6e-63 246.1 237 56.5
FvH4_6g54210 Fragaria vesca HOM05D005312 ORTHO05D006459 2.6e-63 246.1 237 58.6
FAN09G1737 Fragaria x ananassa HOM05D005312 ORTHO05D006459 2.6e-63 246.1 237 58.6
FAN14G0182 Fragaria x ananassa HOM05D005312 ORTHO05D006459 2.6e-63 246.1 237 58.6
FAN05G1132 Fragaria x ananassa HOM05D005312 ORTHO05D006459 3.4e-63 245.7 237 58.6
FAN02G3987 Fragaria x ananassa HOM05D005312 ORTHO05D006459 4.5e-63 245.4 237 58.2
Duzib264G0870 Durio zibethinus HOM05D005312 ORTHO05D006459 7.6e-63 244.6 235 55.3
MD17G1007700 Malus domestica HOM05D005312 ORTHO05D006459 7.6e-63 244.6 241 57.7
Thecc.04G046000 Theobroma cacao HOM05D005312 ORTHO05D006459 7.6e-63 244.6 236 56.8
Lalb_Chr02g0156821 Lupinus albus HOM05D005312 ORTHO05D006459 9.9e-63 244.2 223 61.4
Actinidia37728 Actinidia chinensis HOM05D005312 ORTHO05D006459 1.3e-62 243.8 229 59.4
MD09G1004000 Malus domestica HOM05D005312 ORTHO05D006459 1.7e-62 243.4 240 57.9
CSS0020784 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 2.2e-62 243.0 225 60.0
Lj7A616T62 Lonicera japonica HOM05D005312 ORTHO05D006459 3.8e-62 242.3 238 58.0
TWI32G0425 Tripterygium wilfordii HOM05D005312 ORTHO05D006459 4.9e-62 241.9 241 57.7
ATR0582G189 Amborella trichopoda HOM05D005312 ORTHO05D006459 1.1e-61 240.7 259 52.5
Duzib147G0684 Durio zibethinus HOM05D005312 ORTHO05D006459 1.9e-61 240.0 238 56.3
Lalb_Chr06g0173771 Lupinus albus HOM05D005312 ORTHO05D006459 1.9e-61 240.0 234 59.0
TPR.G36663 Trifolium pratense HOM05D005312 ORTHO05D006459 1.9e-61 240.0 235 57.4
Ah.02g128920 Amaranthus hybridus HOM05D005312 ORTHO05D006459 2.4e-61 239.6 238 55.9
Manes.11G077500 Manihot esculenta HOM05D005312 ORTHO05D006459 2.4e-61 239.6 236 58.9
SalBow4G2016 Salvia bowleyana HOM05D005312 ORTHO05D006459 2.4e-61 239.6 225 56.9
CDE06G1073 Ceratophyllum demersum HOM05D005312 ORTHO05D006459 3.2e-61 239.2 222 57.7
AUR62041074 Chenopodium quinoa HOM05D005312 ORTHO05D006459 3.2e-61 239.2 242 56.6
THA.LOC104823996 Tarenaya hassleriana HOM05D005312 ORTHO05D006459 4.2e-61 238.8 226 59.3
Medtr6g033275 Medicago truncatula HOM05D005312 ORTHO05D006459 5.4e-61 238.4 235 56.6
arahy.Tifrunner.gnm1.ann1.ZY683S Arachis hypogaea HOM05D005312 ORTHO05D006459 9.3e-61 237.7 256 52.3
Aa31LG2G5770 Aethionema arabicum HOM05D005312 ORTHO05D006459 1.2e-60 237.3 231 56.7
Manes.04G092300 Manihot esculenta HOM05D005312 ORTHO05D006459 1.2e-60 237.3 233 58.4
arahy.Tifrunner.gnm1.ann1.JN3C7K Arachis hypogaea HOM05D005312 ORTHO05D006459 2.1e-60 236.5 260 51.5
AUR62037835 Chenopodium quinoa HOM05D005312 ORTHO05D006459 2.1e-60 236.5 242 55.8
CDE02G3855 Ceratophyllum demersum HOM05D005312 ORTHO05D006459 2.7e-60 236.1 219 58.0
Sc03g0004830 Simmondsia chinensis HOM05D005312 ORTHO05D006459 6.0e-60 235.0 223 57.8
Potri.014G145900 Populus trichocarpa HOM05D005312 ORTHO05D006459 7.9e-60 234.6 235 55.3
Oeu039797.1 Olea europaea HOM05D005312 ORTHO05D006459 1.8e-59 233.4 236 55.9
Migut.F00017 Erythranthe guttata HOM05D005312 ORTHO05D006459 2.3e-59 233.0 232 54.7
Nitab4.5_0002172g0150 Nicotiana tabacum HOM05D005312 ORTHO05D006459 3.0e-59 232.6 278 50.4
Psat1g097480 Pisum sativum HOM05D005312 ORTHO05D006459 3.0e-59 232.6 232 57.8
Sabra14G0109800 Salix brachista HOM05D005312 ORTHO05D006459 6.7e-59 231.5 235 56.2
EL10As7g23753 Beta vulgaris HOM05D005312 ORTHO05D006459 8.7e-59 231.1 242 54.1
PSO478G3188 Papaver somniferum HOM05D005312 ORTHO05D006459 8.7e-59 231.1 228 57.5
PSO017G1316 Papaver somniferum HOM05D005312 ORTHO05D006459 1.1e-58 230.7 228 57.5
Eucgr.G01940 Eucalyptus grandis HOM05D005312 ORTHO05D006459 1.9e-58 229.9 238 55.9
Duzib187G0698 Durio zibethinus HOM05D005312 ORTHO05D006459 2.5e-58 229.6 236 54.7
THA.LOC104805304 Tarenaya hassleriana HOM05D005312 ORTHO05D006459 1.3e-57 227.3 226 57.1
Gohir.A07G232100 Gossypium hirsutum HOM05D005312 ORTHO05D006459 1.6e-57 226.9 238 53.8
Potri.002G236600 Populus trichocarpa HOM05D005312 ORTHO05D006459 1.6e-57 226.9 231 56.3
PGR083G1093 Punica granatum HOM05D005312 ORTHO05D006459 2.8e-57 226.1 232 53.0
Gohir.D07G239300 Gossypium hirsutum HOM05D005312 ORTHO05D006459 3.7e-57 225.7 238 53.4
Gorai.001G275400 Gossypium raimondii HOM05D005312 ORTHO05D006459 3.7e-57 225.7 238 53.4
SGA_v2.0_scaffold44G16946 Striga asiatica HOM05D005312 ORTHO05D006459 3.7e-57 225.7 216 56.9
Sp2g15910 Schrenkiella parvula HOM05D005312 ORTHO05D006459 4.8e-57 225.3 224 57.1
GSVIVG01033003001 Vitis vinifera HOM05D005312 ORTHO05D006459 3.1e-56 222.6 227 55.9
DCAR_002973 Daucus carota HOM05D005312 ORTHO05D006459 9.0e-56 221.1 241 54.8
C02p53340 Brassica napus HOM05D005312 ORTHO05D006459 1.2e-55 220.7 219 58.0
Sabra02G0180200 Salix brachista HOM05D005312 ORTHO05D006459 1.2e-55 220.7 226 55.8
BraA02t08484Z Brassica rapa HOM05D005312 ORTHO05D006459 1.5e-55 220.3 219 58.0
Thhalv10004350m.g Eutrema salsugineum HOM05D005312 ORTHO05D006459 1.5e-55 220.3 224 56.7
HanXRQChr14g0451381 Helianthus annuus HOM05D005312 ORTHO05D006459 1.5e-55 220.3 216 56.0
A02p34780 Brassica napus HOM05D005312 ORTHO05D006459 2.0e-55 219.9 216 58.3
BcaB07g30210 Brassica carinata HOM05D005312 ORTHO05D006459 3.4e-55 219.2 220 57.3
BcaC03g17388 Brassica carinata HOM05D005312 ORTHO05D006459 3.4e-55 219.2 219 57.5
BolC2t11405H Brassica oleracea HOM05D005312 ORTHO05D006459 3.4e-55 219.2 219 57.5
AL5G15650 Arabidopsis lyrata HOM05D005312 ORTHO05D006459 5.8e-55 218.4 220 55.9
Carub.0005s0483 Capsella rubella HOM05D005312 ORTHO05D006459 2.9e-54 216.1 227 53.7
ECA238G3491 Erigeron canadensis HOM05D000001 ORTHO05D000003 2.9e-54 216.1 215 56.7
Lsat_1_v5_gn_2_94460 Lactuca sativa HOM05D005312 ORTHO05D006459 3.8e-54 215.7 206 56.3
AT3G26780 Arabidopsis thaliana HOM05D005312 ORTHO05D006459 7.9e-52 208.0 225 53.3
CARHR013180 Cardamine hirsuta HOM05D005312 ORTHO05D006459 7.9e-52 208.0 217 53.9
Aa31LG1G1910 Aethionema arabicum HOM05D005312 ORTHO05D006459 1.3e-51 207.2 223 54.3
SEGI_01379 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 3.9e-51 205.7 221 52.0
AL1G24500 Arabidopsis lyrata HOM05D005312 ORTHO05D006459 8.7e-51 204.5 220 54.1
AT1G12850 Arabidopsis thaliana HOM05D005312 ORTHO05D006459 8.7e-51 204.5 218 53.7
SEGI_20575 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 1.1e-50 204.1 231 50.2
Carub.0001s1260 Capsella rubella HOM05D005312 ORTHO05D006459 1.5e-50 203.8 228 51.8
Sp1g11430 Schrenkiella parvula HOM05D005312 ORTHO05D006459 1.6e-49 200.3 213 54.0
BolC8t49199H Brassica oleracea HOM05D005312 ORTHO05D006459 4.8e-49 198.7 206 53.4
C08p15720 Brassica napus HOM05D005312 ORTHO05D006459 6.2e-49 198.4 210 52.9
BcaB03g13161 Brassica carinata HOM05D005312 ORTHO05D006459 1.1e-48 197.6 210 53.3
ECA246G2144 Erigeron canadensis HOM05D005312 ORTHO05D006459 1.1e-48 197.6 215 51.2
BraA08t35181Z Brassica rapa HOM05D005312 ORTHO05D006459 3.1e-48 196.1 208 54.3
A08p32570 Brassica napus HOM05D005312 ORTHO05D006459 1.2e-47 194.1 206 53.9
Oeu003422.1 Olea europaea HOM05D005312 ORTHO05D006459 3.4e-47 192.6 241 47.7
Gohir.D10G081000 Gossypium hirsutum HOM05D005312 ORTHO05D006459 4.5e-47 192.2 222 48.6
Gohir.A10G070100 Gossypium hirsutum HOM05D005312 ORTHO05D006459 1.0e-46 191.0 222 48.6
CARHR147850 Cardamine hirsuta HOM05D005312 ORTHO05D006459 1.7e-46 190.3 217 51.2
Ca_26608_v3 Cicer arietinum L. HOM05D005312 ORTHO05D006459 2.9e-46 189.5 359 37.9
Gorai.011G088100 Gossypium raimondii HOM05D005312 ORTHO05D006459 2.9e-46 189.5 222 48.2
Thhalv10007881m.g Eutrema salsugineum HOM05D005312 ORTHO05D006459 5.5e-45 185.3 216 53.2
VMungo0464G0174 Vigna mungo HOM05D005312 ORTHO05D006459 8.5e-38 161.4 172 54.1
Pp3c21_20660 Physcomitrium patens HOM05D005312 ORTHO05D006459 5.1e-35 152.1 142 52.8
CBR_g2835 Chara braunii HOM05D005312 ORTHO05D006459 2.5e-34 149.8 143 53.1
Actinidia19557 Actinidia chinensis HOM05D005312 ORTHO05D006459 3.6e-28 129.4 104 64.4
AagrBONN_evm.TU.Sc2ySwM_344.1953 Anthoceros agrestis HOM05D005312 ORTHO05D006459 1.8e-27 127.1 142 45.1
unitig_37.g12041 Utricularia gibba HOM05D005312 ORTHO05D006459 5.5e-21 105.5 133 48.1
VMungo0464G1790 Vigna mungo HOM05D005312 ORTHO05D006459 4.7e-20 102.4 74 73.0
CSS0007293 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 6.7e-19 98.6 71 70.4
unitig_37.g12040 Utricularia gibba HOM05D005312 ORTHO05D006459 2.0e-18 97.1 72 68.1
Nn3g16305 Nelumbo nucifera HOM05D005312 ORTHO05D006459 6.3e-17 92.0 131 46.6
Haze_14938 Corylus avellana HOM05D005312 ORTHO05D006459 7.0e-16 88.6 72 62.5
SEGI_29311 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 7.2e-13 78.6 76 53.9
SGA_v2.0_scaffold173G39196 Striga asiatica HOM05D005312 ORTHO05D006459 1.2e-10 71.2 65 58.5
PRCOL_00002808 Prasinoderma coloniale HOM05D005312 ORTHO05D006459 3.3e-10 69.7 163 31.9


User provided reference genes

Program Settings