Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_008194 Vanilla planifolia HOM05D004905 ORTHO05D005456 8.9e-128 460.7 309 100.0
Eucgr.F02791 Eucalyptus grandis HOM05D004905 ORTHO05D005456 7.0e-32 142.1 313 39.3
COL.COLO4_09375 Corchorus olitorius HOM05D004905 ORTHO05D005456 2.3e-30 137.1 325 38.8
QL02p050316 Quercus lobata HOM05D004905 ORTHO05D005456 3.0e-30 136.7 317 37.5
Duzib138G0198 Durio zibethinus HOM05D004905 ORTHO05D005456 3.9e-30 136.3 312 34.6
QL04p012071 Quercus lobata HOM05D004905 ORTHO05D005456 3.9e-30 136.3 318 35.5
Lj4P184T26 Lonicera japonica HOM05D004905 ORTHO05D005456 5.0e-30 136.0 204 58.8
Medtr7g082660 Medicago truncatula HOM05D004905 ORTHO05D005456 4.3e-29 132.9 305 33.4
SalBow3G3699 Salvia bowleyana HOM05D004905 ORTHO05D005456 4.3e-29 132.9 314 41.7
Ca_08091_v3 Cicer arietinum L. HOM05D004905 ORTHO05D005456 1.2e-28 131.3 312 35.6
Sabra17G0098200 Salix brachista HOM05D004905 ORTHO05D005456 1.6e-28 131.0 312 34.3
Potri.017G118900 Populus trichocarpa HOM05D004905 ORTHO05D005456 3.6e-28 129.8 317 36.3
Lalb_Chr04g0257631 Lupinus albus HOM05D004905 ORTHO05D005456 4.7e-28 129.4 313 34.2
Ciclev10011170m.g Citrus clementina HOM05D004905 ORTHO05D005456 6.2e-28 129.0 315 43.8
TWI74G1312 Tripterygium wilfordii HOM05D004905 ORTHO05D005456 1.1e-27 128.3 304 36.2
Gohir.D11G172100 Gossypium hirsutum HOM05D004905 ORTHO05D005456 1.8e-27 127.5 308 46.1
DCAR_010704 Daucus carota HOM05D004905 ORTHO05D005456 4.0e-27 126.3 313 37.4
Potri.004G095800 Populus trichocarpa HOM05D004905 ORTHO05D005456 5.2e-27 125.9 307 45.3
TPR.G16546 Trifolium pratense HOM05D004905 ORTHO05D005456 5.2e-27 125.9 308 33.4
Gohir.A11G165900 Gossypium hirsutum HOM05D004905 ORTHO05D005456 1.2e-26 124.8 308 45.5
CANSAT11G1581 Cannabis sativa HOM05D004905 ORTHO05D005456 1.5e-26 124.4 316 39.9
Gorai.007G184500 Gossypium raimondii HOM05D004905 ORTHO05D005456 1.5e-26 124.4 308 45.8
Aqoxy3G04036 Aquilegia oxysepala HOM05D004905 ORTHO05D005456 2.0e-26 124.0 307 43.6
Nitab4.5_0011439g0010 Nicotiana tabacum HOM05D004905 ORTHO05D005456 2.6e-26 123.6 315 33.3
TWI53G1125 Tripterygium wilfordii HOM05D004905 ORTHO05D005456 2.6e-26 123.6 297 38.0
Glyma.18G294100 Glycine max HOM05D004905 ORTHO05D005456 2.2e-25 120.6 317 46.1
Nitab4.5_0000753g0160 Nicotiana tabacum HOM05D004905 ORTHO05D005456 2.2e-25 120.6 307 36.8
ECA238G0899 Erigeron canadensis HOM05D004905 ORTHO05D005456 4.9e-25 119.4 305 34.1
Migut.H00239 Erythranthe guttata HOM05D004905 ORTHO05D005456 4.9e-25 119.4 307 44.6
VMungo0464G1170 Vigna mungo HOM05D004905 ORTHO05D005456 4.9e-25 119.4 307 34.9
TAR535G0011 Trochodendron aralioides HOM05D004905 ORTHO05D005456 3.2e-24 116.7 312 38.8
Haze_14185 Corylus avellana HOM05D004905 ORTHO05D005456 5.4e-24 115.9 318 37.7
Psat3g097720 Pisum sativum HOM05D004905 ORTHO05D005456 5.4e-24 115.9 312 31.1
Oeu030795.1 Olea europaea HOM05D004905 ORTHO05D005456 9.2e-24 115.2 315 31.1
arahy.Tifrunner.gnm1.ann1.00EJBM Arachis hypogaea HOM05D004905 ORTHO05D005456 1.2e-23 114.8 313 41.2
arahy.Tifrunner.gnm1.ann1.VL1078 Arachis hypogaea HOM05D004905 ORTHO05D005456 1.2e-23 114.8 313 41.2
Cfa007892 Carpinus fangiana HOM05D004905 ORTHO05D005456 2.7e-23 113.6 314 35.4
TAR426G0001 Trochodendron aralioides HOM05D004905 ORTHO05D005456 6.0e-23 112.5 304 35.5
MSTRG.23594 Avicennia marina HOM05D004905 ORTHO05D005456 1.5e-21 107.8 322 41.3
RcHm_v2.0_Chr2g0123711 Rosa chinensis HOM05D004905 ORTHO05D005456 1.5e-21 107.8 306 44.1
Hund13701 Selenicereus undatus HOM05D004905 ORTHO05D005456 3.3e-21 106.7 302 35.8
Peaxi162Scf00877g00001 Petunia axillaris HOM05D004905 ORTHO05D005456 4.3e-21 106.3 313 40.6
CSS0040498 Camellia sinensis var. sinensis HOM05D004905 ORTHO05D005456 5.6e-21 105.9 304 31.6
Lsat_1_v5_gn_2_80961 Lactuca sativa HOM05D004905 ORTHO05D005456 1.6e-20 104.4 301 29.2
PGSC0003DMG400026397 Solanum tuberosum HOM05D004905 ORTHO05D005456 3.6e-20 103.2 314 29.9
ECA232G5032 Erigeron canadensis HOM05D004905 ORTHO05D005456 4.7e-20 102.8 303 42.2
Lj2C439T5 Lonicera japonica HOM05D004905 ORTHO05D005456 4.7e-20 102.8 296 32.1
CDE02G1873 Ceratophyllum demersum HOM05D004905 ORTHO05D005456 8.1e-20 102.1 208 44.7
Phvul.004G002200 Phaseolus vulgaris HOM05D004905 ORTHO05D005456 1.4e-19 101.3 307 36.8
Sopen02g031010 Solanum pennellii HOM05D004905 ORTHO05D005456 1.8e-19 100.9 314 29.6
Dinv33966 Davidia involucrata HOM05D001288 ORTHO05D005456 2.3e-19 100.5 306 43.1
Lj1g0028143 Lotus japonicus HOM05D004905 ORTHO05D005456 6.8e-19 99.0 309 44.0
Lalb_Chr10g0091451 Lupinus albus HOM05D004905 ORTHO05D005456 1.2e-18 98.2 310 38.7
vmacro22954 Vaccinium macrocarpon HOM05D004905 ORTHO05D005456 1.5e-18 97.8 208 35.6
unitig_899.g14515 Utricularia gibba HOM05D004905 ORTHO05D005456 2.0e-18 97.4 303 28.7
CsaV3_2G033850 Cucumis sativus L. HOM05D004905 ORTHO05D005456 2.6e-18 97.1 210 37.1
SGA_v2.0_scaffold202G41468 Striga asiatica HOM05D004905 ORTHO05D005456 2.6e-18 97.1 200 36.5
Cc07_g08530 Coffea canephora HOM05D004905 ORTHO05D005456 3.4e-18 96.7 196 36.2
Zm00001eb156080 Zea mays HOM05D004905 ORTHO05D005456 3.4e-18 96.7 317 29.0
Solyc02g086350.3 Solanum lycopersicum HOM05D004905 ORTHO05D005456 7.6e-18 95.5 314 29.0
DCAR_011263 Daucus carota HOM05D004905 ORTHO05D005456 1.3e-17 94.7 299 32.1
Rhsim10G0072700 Rhododendron simsii HOM05D004905 ORTHO05D005456 1.3e-17 94.7 203 36.5
Thecc.04G128800 Theobroma cacao HOM05D004905 ORTHO05D005456 1.3e-17 94.7 198 39.4
Atru.chr1.1616 Acer truncatum HOM05D004905 ORTHO05D005456 1.7e-17 94.4 314 42.4
Gohir.A07G175500 Gossypium hirsutum HOM05D004905 ORTHO05D005456 1.7e-17 94.4 195 36.4
Nn3g17953 Nelumbo nucifera HOM05D004905 ORTHO05D005456 2.2e-17 94.0 304 40.1
Carub.0005s1253 Capsella rubella HOM05D004905 ORTHO05D005456 3.8e-17 93.2 302 28.1
MD17G1250200 Malus domestica HOM05D004905 ORTHO05D005456 3.8e-17 93.2 304 43.1
Lsat_1_v5_gn_4_155561 Lactuca sativa HOM05D004905 ORTHO05D005456 4.9e-17 92.8 299 37.5
AL7G52720 Arabidopsis lyrata HOM05D004905 ORTHO05D005456 8.4e-17 92.0 297 36.0
Gohir.D07G181800 Gossypium hirsutum HOM05D004905 ORTHO05D005456 8.4e-17 92.0 195 36.4
AUR62009040 Chenopodium quinoa HOM05D004905 ORTHO05D005456 1.1e-16 91.7 305 37.7
Os05g0550100 Oryza sativa ssp. japonica HOM05D004905 ORTHO05D005456 1.4e-16 91.3 216 32.9
Gorai.001G202800 Gossypium raimondii HOM05D004905 ORTHO05D005456 1.9e-16 90.9 195 35.9
Sed0000790 Sechium edule HOM05D004905 ORTHO05D005456 4.1e-16 89.7 206 35.4
Prupe.3G148500 Prunus persica HOM05D004905 ORTHO05D005456 5.4e-16 89.4 309 40.5
VMungo1383G0301 Vigna mungo HOM05D004905 ORTHO05D005456 5.4e-16 89.4 315 41.9
arahy.Tifrunner.gnm1.ann1.98PLAU Arachis hypogaea HOM05D004905 ORTHO05D005456 7.1e-16 89.0 309 33.3
arahy.Tifrunner.gnm1.ann1.NNR4KN Arachis hypogaea HOM05D004905 ORTHO05D005456 9.2e-16 88.6 309 33.3
EL10Ac2g04529 Beta vulgaris HOM05D004905 ORTHO05D005456 1.6e-15 87.8 314 35.0
MELO3C008158.2 Cucumis melo HOM05D004905 ORTHO05D005456 1.6e-15 87.8 211 34.6
Dinv34793 Davidia involucrata HOM05D004905 ORTHO05D005456 1.6e-15 87.8 199 33.7
Manes.02G071500 Manihot esculenta HOM05D004905 ORTHO05D005456 1.6e-15 87.8 223 34.5
PSO017G0866 Papaver somniferum HOM05D004905 ORTHO05D005456 1.6e-15 87.8 336 33.3
CiPaw.03G064700 Carya illinoinensis HOM05D004905 ORTHO05D005456 2.1e-15 87.4 156 41.0
ClCG11G007710 Citrullus lanatus HOM05D004905 ORTHO05D005456 2.7e-15 87.0 211 33.6
Glyma.02G089100 Glycine max HOM05D001288 ORTHO05D001123 2.7e-15 87.0 187 38.5
HanXRQChr07g0190621 Helianthus annuus HOM05D004905 ORTHO05D005456 2.7e-15 87.0 276 41.3
Phvul.008G008400 Phaseolus vulgaris HOM05D004905 ORTHO05D005456 3.5e-15 86.7 192 37.0
Sc10g0001050 Simmondsia chinensis HOM05D004905 ORTHO05D005456 6.0e-15 85.9 190 35.8
CARHR058960 Cardamine hirsuta HOM05D004905 ORTHO05D005456 1.0e-14 85.1 304 27.3
FAN19G0313 Fragaria x ananassa HOM05D004905 ORTHO05D005456 1.0e-14 85.1 306 42.2
Aa31LG2G3310 Aethionema arabicum HOM05D004905 ORTHO05D005456 1.3e-14 84.7 309 26.5
FvH4_1g25551 Fragaria vesca HOM05D004905 ORTHO05D005456 2.3e-14 84.0 306 41.8
Actinidia15900 Actinidia chinensis HOM05D004905 ORTHO05D005456 3.0e-14 83.6 302 31.1
Carub.0002s1304 Capsella rubella HOM05D004905 ORTHO05D005456 3.0e-14 83.6 200 29.5
FAN28G0686 Fragaria x ananassa HOM05D004905 ORTHO05D005456 3.0e-14 83.6 306 42.2
CAN.G625.56 Capsicum annuum HOM05D004905 ORTHO05D005456 3.9e-14 83.2 310 28.7
Os01g0692300 Oryza sativa ssp. japonica HOM05D004905 ORTHO05D005456 3.9e-14 83.2 197 35.0
Nn4g23955 Nelumbo nucifera HOM05D004905 ORTHO05D005456 8.6e-14 82.0 306 40.8
FAN26G1687 Fragaria x ananassa HOM05D004905 ORTHO05D005456 1.1e-13 81.6 301 42.5
PSO478G4495 Papaver somniferum HOM05D004905 ORTHO05D005456 1.1e-13 81.6 339 27.4
Sp7g03910 Schrenkiella parvula HOM05D004905 ORTHO05D005456 1.1e-13 81.6 306 32.4
Aa31LG9G17230 Aethionema arabicum HOM05D004905 ORTHO05D005456 2.5e-13 80.5 303 37.6
CDE08G0600 Ceratophyllum demersum HOM05D004905 ORTHO05D005456 2.5e-13 80.5 218 34.4
BcaB06g27171 Brassica carinata HOM05D004905 ORTHO05D005456 1.2e-12 78.2 302 26.5
HanXRQChr09g0262681 Helianthus annuus HOM05D004905 ORTHO05D005456 1.6e-12 77.8 303 39.3
AT5G38150 Arabidopsis thaliana HOM05D004905 ORTHO05D005456 2.1e-12 77.4 304 37.5
BcaB03g15228 Brassica carinata HOM05D004905 ORTHO05D005456 2.1e-12 77.4 313 26.8
C04p44880 Brassica napus HOM05D004905 ORTHO05D005456 2.8e-12 77.0 303 25.4
Oeu041980.1 Olea europaea HOM05D004905 ORTHO05D005456 2.8e-12 77.0 312 37.5
A04p11140 Brassica napus HOM05D004905 ORTHO05D005456 3.6e-12 76.6 303 26.1
BraA04t16780Z Brassica rapa HOM05D004905 ORTHO05D005456 4.7e-12 76.3 303 25.7
BolC6t39105H Brassica oleracea HOM05D004905 ORTHO05D005456 8.1e-12 75.5 313 27.8
AL2G25050 Arabidopsis lyrata HOM05D004905 ORTHO05D005456 1.1e-11 75.1 305 24.9
A07p33640 Brassica napus HOM05D004905 ORTHO05D005456 1.1e-11 75.1 311 27.7
unitig_37.g12374 Utricularia gibba HOM05D004905 ORTHO05D005456 1.1e-11 75.1 215 38.6
BcaC08g46129 Brassica carinata HOM05D004905 ORTHO05D005456 1.4e-11 74.7 311 25.7
Thhalv10027702m.g Eutrema salsugineum HOM05D004905 ORTHO05D005456 1.4e-11 74.7 305 37.7
C06p40220 Brassica napus HOM05D000005 ORTHO05D005456 1.8e-11 74.3 313 27.8
BraA07t30992Z Brassica rapa HOM05D004905 ORTHO05D005456 1.8e-11 74.3 310 26.1
THA.LOC104823849 Tarenaya hassleriana HOM05D004905 ORTHO05D005456 2.4e-11 73.9 310 31.9
MD09G1256700 Malus domestica HOM05D004905 ORTHO05D005456 3.1e-11 73.6 186 33.9
ATR0681G096 Amborella trichopoda HOM05D004905 ORTHO05D005456 4.0e-11 73.2 195 31.8
AT1G66840 Arabidopsis thaliana HOM05D004905 ORTHO05D005456 4.0e-11 73.2 308 28.6
Sp5g21810 Schrenkiella parvula HOM05D004905 ORTHO05D005456 1.5e-10 71.2 309 31.4
Hma1.2p1_0500F.1_g167210 Hydrangea macrophylla HOM05D004905 ORTHO05D005456 9.9e-10 68.6 205 34.1
Zm00001eb342860 Zea mays HOM05D004905 ORTHO05D005456 9.9e-10 68.6 210 31.9
Glyma.19G001900 Glycine max HOM05D004905 ORTHO05D005456 1.3e-09 68.2 275 35.3
AUR62023221 Chenopodium quinoa HOM05D004905 ORTHO05D005456 1.7e-09 67.8 197 32.0
Thhalv10018290m.g Eutrema salsugineum HOM05D004905 ORTHO05D005456 6.4e-09 65.9 200 30.0
Ah.10g037620 Amaranthus hybridus HOM05D004905 ORTHO05D005456 8.4e-09 65.5 212 40.1
HanXRQChr12g0357381 Helianthus annuus HOM05D004905 ORTHO05D005456 1.1e-08 65.1 190 33.2
PGR004G1909 Punica granatum HOM05D004905 ORTHO05D005456 5.4e-08 62.8 184 31.5
Cpa.g.sc170.31 Carica papaya HOM05D004905 ORTHO05D005456 3.5e-07 60.1 313 30.0
HanXRQChr11g0325151 Helianthus annuus HOM05D004905 ORTHO05D005456 3.5e-07 60.1 306 38.9
Aqoxy4G01116 Aquilegia oxysepala HOM05D004905 ORTHO05D005456 2.3e-06 57.4 64 48.4
Sc03g0011630 Simmondsia chinensis HOM05D001827 ORTHO05D001790 2.3e-06 57.4 193 34.7
Sed0007556 Sechium edule HOM05D001827 ORTHO05D001790 3.9e-06 56.6 217 34.6
Glyma.02G301400 Glycine max HOM05D001827 ORTHO05D001790 6.6e-06 55.8 199 25.1


User provided reference genes

Program Settings