Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_008098 Vanilla planifolia HOM05D003913 ORTHO05D004803 3.4e-119 432.6 397 100.0
Zm00001eb139680 Zea mays HOM05D003913 ORTHO05D004803 1.7e-54 217.6 390 70.0
Zm00001eb362180 Zea mays HOM05D003913 ORTHO05D004803 2.9e-54 216.9 392 61.0
Lalb_Chr20g0121511 Lupinus albus HOM05D003913 ORTHO05D004803 3.2e-53 213.4 394 45.2
Os03g0685600 Oryza sativa ssp. japonica HOM05D003913 ORTHO05D004803 7.1e-53 212.2 386 63.7
CDE08G0059 Ceratophyllum demersum HOM05D003913 ORTHO05D004803 2.7e-52 210.3 382 70.2
BcaB03g15621 Brassica carinata HOM05D003913 ORTHO05D004803 3.0e-51 206.8 388 63.4
arahy.Tifrunner.gnm1.ann1.0Z7T57 Arachis hypogaea HOM05D003913 ORTHO05D004803 5.1e-51 206.1 379 40.4
BcaC08g45753 Brassica carinata HOM05D003913 ORTHO05D004803 6.7e-51 205.7 391 66.0
ATR0001G003 Amborella trichopoda HOM05D003913 ORTHO05D004803 1.5e-50 204.5 343 53.4
Sed0012824 Sechium edule HOM05D003913 ORTHO05D004803 2.5e-50 203.8 389 59.9
Ca_30575_v3 Cicer arietinum L. HOM05D003913 ORTHO05D004803 3.3e-50 203.4 392 42.3
Lj5g0008809 Lotus japonicus HOM05D003913 ORTHO05D004803 4.3e-50 203.0 392 38.8
LjContig00222g0022410 Lotus japonicus HOM05D003913 ORTHO05D004803 7.4e-50 202.2 386 43.3
Oeu053831.1 Olea europaea HOM05D003913 ORTHO05D004803 1.3e-49 201.4 389 66.1
BcaC08g46615 Brassica carinata HOM05D003913 ORTHO05D004803 2.8e-49 200.3 390 64.4
BolC6t38638H Brassica oleracea HOM05D003913 ORTHO05D004803 2.8e-49 200.3 401 48.6
Thhalv10018505m.g Eutrema salsugineum HOM05D003913 ORTHO05D004803 2.8e-49 200.3 383 67.1
Aa31LG4G8790 Aethionema arabicum HOM05D003913 ORTHO05D004803 3.7e-49 199.9 412 64.1
C06p45910 Brassica napus HOM05D003913 ORTHO05D004803 4.8e-49 199.5 380 66.1
ECA232G2276 Erigeron canadensis HOM05D003913 ORTHO05D004803 4.8e-49 199.5 392 70.4
Dinv13071 Davidia involucrata HOM05D003913 ORTHO05D004803 6.2e-49 199.1 390 43.6
AL2G31420 Arabidopsis lyrata HOM05D003913 ORTHO05D004803 1.8e-48 197.6 388 64.2
Lsat_1_v5_gn_9_43060 Lactuca sativa HOM05D003913 ORTHO05D004803 2.4e-48 197.2 386 70.5
Nn3g16733 Nelumbo nucifera HOM05D003913 ORTHO05D004803 3.1e-48 196.8 390 71.5
CARHR290910 Cardamine hirsuta HOM05D003913 ORTHO05D004803 4.0e-48 196.4 395 58.5
BraA07t30691Z Brassica rapa HOM05D003913 ORTHO05D004803 6.9e-48 195.7 401 56.9
arahy.Tifrunner.gnm1.ann1.F1WV5B Arachis hypogaea HOM05D003913 ORTHO05D004803 9.0e-48 195.3 379 39.3
Cc11_g02860 Coffea canephora HOM05D003913 ORTHO05D004803 2.0e-47 194.1 383 68.7
GSVIVG01015205001 Vitis vinifera HOM05D003913 ORTHO05D004803 2.0e-47 194.1 386 54.9
AT1G71840 Arabidopsis thaliana HOM05D003913 ORTHO05D004803 2.6e-47 193.7 389 67.1
THA.LOC104826775 Tarenaya hassleriana HOM05D003913 ORTHO05D004803 2.6e-47 193.7 387 65.6
C06p35320 Brassica napus HOM05D003913 ORTHO05D004803 5.8e-47 192.6 415 55.9
Dinv44716 Davidia involucrata HOM05D003913 ORTHO05D004803 5.8e-47 192.6 390 45.6
Sp5g26870 Schrenkiella parvula HOM05D003913 ORTHO05D004803 7.6e-47 192.2 389 63.2
SpUn0020_0100 Schrenkiella parvula HOM05D003913 ORTHO05D004803 7.6e-47 192.2 389 63.2
A07p30560 Brassica napus HOM05D003913 ORTHO05D004803 1.3e-46 191.4 415 42.4
Glyma.20G173100 Glycine max HOM05D003913 ORTHO05D004803 3.8e-46 189.9 380 48.7
A07p37990 Brassica napus HOM05D003913 ORTHO05D004803 8.4e-46 188.7 393 59.0
CiPaw.15G007000 Carya illinoinensis HOM05D003913 ORTHO05D004803 8.4e-46 188.7 389 64.3
FAN04G3257 Fragaria x ananassa HOM05D003913 ORTHO05D004803 1.4e-45 188.0 413 55.7
Manes.02G188000 Manihot esculenta HOM05D003913 ORTHO05D004803 5.5e-45 186.0 387 63.3
Aqoxy1G00206 Aquilegia oxysepala HOM05D003913 ORTHO05D004803 7.1e-45 185.7 392 60.7
CSS0047372 Camellia sinensis var. sinensis HOM05D003913 ORTHO05D004803 1.2e-44 184.9 392 68.6
Gorai.006G187200 Gossypium raimondii HOM05D003913 ORTHO05D004803 2.1e-44 184.1 391 38.9
AUR62017935 Chenopodium quinoa HOM05D003913 ORTHO05D004803 2.7e-44 183.7 397 63.0
TWI12G0147 Tripterygium wilfordii HOM05D003913 ORTHO05D004803 3.5e-44 183.3 398 67.3
BraA07t31364Z Brassica rapa HOM05D003913 ORTHO05D004803 4.6e-44 183.0 382 64.4
Gohir.D09G165400 Gossypium hirsutum HOM05D003913 ORTHO05D004803 4.6e-44 183.0 391 38.6
PGR031G2719 Punica granatum HOM05D003913 ORTHO05D004803 4.6e-44 183.0 384 62.8
BolC6t39643H Brassica oleracea HOM05D003913 ORTHO05D004803 7.9e-44 182.2 387 63.6
CsaV3_6G002750 Cucumis sativus L. HOM05D003913 ORTHO05D004803 1.3e-43 181.4 388 61.3
HanXRQChr11g0320411 Helianthus annuus HOM05D003913 ORTHO05D004803 1.8e-43 181.0 394 69.0
SalBow7G2889 Salvia bowleyana HOM05D003913 ORTHO05D004803 1.8e-43 181.0 400 57.5
TWI75G1061 Tripterygium wilfordii HOM05D003913 ORTHO05D004803 2.3e-43 180.6 398 67.6
Psat6g188560 Pisum sativum HOM05D000168 ORTHO05D004803 3.0e-43 180.3 366 33.9
Hund19608 Selenicereus undatus HOM05D003913 ORTHO05D004803 5.1e-43 179.5 431 61.7
ClCG08G002560 Citrullus lanatus HOM05D003913 ORTHO05D004803 6.7e-43 179.1 385 62.1
MELO3C024997.2 Cucumis melo HOM05D003913 ORTHO05D004803 8.7e-43 178.7 388 61.3
Phvul.011G104600 Phaseolus vulgaris HOM05D003913 ORTHO05D004803 1.9e-42 177.6 392 53.6
Potri.019G087200 Populus trichocarpa HOM05D003913 ORTHO05D004803 4.3e-42 176.4 397 61.2
Sed0004416 Sechium edule HOM05D003913 ORTHO05D004803 4.3e-42 176.4 383 61.6
VMungo1080G1176 Vigna mungo HOM05D003913 ORTHO05D004803 4.3e-42 176.4 392 49.5
Gohir.A09G169700 Gossypium hirsutum HOM05D003913 ORTHO05D004803 5.7e-42 176.0 391 42.7
FvH4_5g22350 Fragaria vesca HOM05D003913 ORTHO05D004803 9.6e-42 175.3 379 62.3
FAN18G2025 Fragaria x ananassa HOM05D003913 ORTHO05D004803 9.6e-42 175.3 379 62.3
FAN18G2798 Fragaria x ananassa HOM05D003913 ORTHO05D004803 9.6e-42 175.3 379 62.3
RcHm_v2.0_Chr7g0210071 Rosa chinensis HOM05D003913 ORTHO05D004803 9.6e-42 175.3 379 62.8
SEGI_39165 Sequoiadendron giganteum HOM05D003913 ORTHO05D004803 4.8e-41 172.9 387 65.6
Potri.013G116900 Populus trichocarpa HOM05D003913 ORTHO05D004803 8.2e-41 172.2 403 57.1
FAN08G0696 Fragaria x ananassa HOM05D003913 ORTHO05D004803 1.8e-40 171.0 379 61.7
Ciclev10008663m.g Citrus clementina HOM05D003913 ORTHO05D004803 5.3e-40 169.5 381 61.7
Rhsim04G0038100 Rhododendron simsii HOM05D003913 ORTHO05D004803 5.3e-40 169.5 405 64.0
TAR625G1217 Trochodendron aralioides HOM05D003913 ORTHO05D004803 2.0e-39 167.5 390 64.4
MD07G1041000 Malus domestica HOM05D003913 ORTHO05D004803 2.6e-39 167.2 384 60.7
Nitab4.5_0002890g0020 Nicotiana tabacum HOM05D003913 ORTHO05D004803 4.5e-39 166.4 348 40.8
MD02G1272000 Malus domestica HOM05D003913 ORTHO05D004803 1.0e-38 165.2 397 61.5
TPR.G30584 Trifolium pratense HOM05D003913 ORTHO05D004803 1.3e-38 164.9 401 39.2
Prupe.8G049100 Prunus persica HOM05D003913 ORTHO05D004803 2.9e-38 163.7 384 60.2
Actinidia29569 Actinidia chinensis HOM05D003913 ORTHO05D004803 6.5e-38 162.5 386 60.4
PSO675G8150 Papaver somniferum HOM05D003913 ORTHO05D004803 1.1e-37 161.8 398 64.6
unitig_747.g21315 Utricularia gibba HOM05D003913 ORTHO05D004803 1.4e-37 161.4 390 41.5
Cfa018220 Carpinus fangiana HOM05D003913 ORTHO05D004803 2.5e-37 160.6 338 72.5
Medtr1g097140 Medicago truncatula HOM05D003913 ORTHO05D004803 2.5e-37 160.6 381 31.0
Carub.0002s1860 Capsella rubella HOM05D003913 ORTHO05D004803 3.2e-37 160.2 394 63.5
FvH4_2g12470 Fragaria vesca HOM05D003913 ORTHO05D004803 4.2e-37 159.8 384 67.4
Gohir.D06G113300 Gossypium hirsutum HOM05D003913 ORTHO05D004803 4.2e-37 159.8 383 40.2
Gorai.010G129100 Gossypium raimondii HOM05D003913 ORTHO05D004803 4.2e-37 159.8 383 39.9
Duzib211G0424 Durio zibethinus HOM05D003913 ORTHO05D004803 5.5e-37 159.5 391 43.7
ECA236G4407 Erigeron canadensis HOM05D003913 ORTHO05D004803 5.5e-37 159.5 377 36.3
RcHm_v2.0_Chr6g0272901 Rosa chinensis HOM05D003913 ORTHO05D004803 1.2e-36 158.3 396 65.2
arahy.Tifrunner.gnm1.ann1.A7TGXU Arachis hypogaea HOM05D003913 ORTHO05D004803 1.6e-36 157.9 412 34.0
FAN24G0738 Fragaria x ananassa HOM05D003913 ORTHO05D004803 2.1e-36 157.5 384 67.4
Nitab4.5_0000366g0190 Nicotiana tabacum HOM05D003913 ORTHO05D004803 2.1e-36 157.5 345 64.1
EL10Ac6g15251 Beta vulgaris HOM05D003913 ORTHO05D004803 3.5e-36 156.8 394 67.5
Lj4A109T49 Lonicera japonica HOM05D003913 ORTHO05D004803 3.5e-36 156.8 391 62.7
VMungo0720G0336 Vigna mungo HOM05D003913 ORTHO05D004803 3.5e-36 156.8 394 49.7
Migut.J01123 Erythranthe guttata HOM05D003913 ORTHO05D004803 6.1e-36 156.0 396 39.9
Hma1.2p1_0276F.1_g111300 Hydrangea macrophylla HOM05D003913 ORTHO05D004803 6.1e-36 156.0 321 72.3
MBI10_g42737_MAGBIO Magnolia biondii HOM05D003913 ORTHO05D004803 7.9e-36 155.6 351 71.2
GSVIVG01001592001 Vitis vinifera HOM05D003913 ORTHO05D004803 6.7e-35 152.5 397 63.2
Lj2C196T3 Lonicera japonica HOM05D003913 ORTHO05D004803 5.7e-34 149.4 394 37.3
MSTRG.9615 Avicennia marina HOM05D003913 ORTHO05D004803 7.4e-34 149.1 346 59.8
DCAR_000644 Daucus carota HOM05D003913 ORTHO05D004803 9.7e-34 148.7 389 38.8
PSO541G3150 Papaver somniferum HOM05D003913 ORTHO05D004803 2.8e-33 147.1 359 61.3
Thecc.08G198300 Theobroma cacao HOM05D003913 ORTHO05D004803 3.7e-33 146.7 399 35.3
Aa31LG7G6630 Aethionema arabicum HOM05D003913 ORTHO05D004803 4.8e-33 146.4 390 29.7
CANSAT25G1043 Cannabis sativa HOM05D003913 ORTHO05D004803 4.8e-33 146.4 391 58.6
Sabra19G0101300 Salix brachista HOM05D003913 ORTHO05D004803 3.1e-32 143.7 392 64.3
Sabra13G0099000 Salix brachista HOM05D003913 ORTHO05D004803 5.3e-32 142.9 386 58.5
Rhsim06G0087400 Rhododendron simsii HOM05D003913 ORTHO05D004803 6.9e-32 142.5 344 68.9
Sc16g0003970 Simmondsia chinensis HOM05D003913 ORTHO05D004803 2.6e-31 140.6 334 71.0
Gohir.A06G109200 Gossypium hirsutum HOM05D003913 ORTHO05D004803 3.4e-31 140.2 357 35.0
Oeu053830.1 Olea europaea HOM05D003913 ORTHO05D004803 4.5e-31 139.8 385 60.8
Sabra19G0097800 Salix brachista HOM05D003913 ORTHO05D004803 4.5e-31 139.8 392 64.5
EL10Ac5g10958 Beta vulgaris HOM05D003913 ORTHO05D004803 1.0e-30 138.7 401 29.7
EL10Ac9g21859 Beta vulgaris HOM05D003913 ORTHO05D004803 1.3e-30 138.3 332 35.5
Atru.chr13.1880 Acer truncatum HOM05D003913 ORTHO05D004803 2.2e-30 137.5 382 58.1
PGSC0003DMG400028735 Solanum tuberosum HOM05D003913 ORTHO05D004803 5.0e-30 136.3 402 56.7
Ah.03g146560 Amaranthus hybridus HOM05D003913 ORTHO05D004803 1.1e-29 135.2 387 58.4
AagrBONN_evm.TU.Sc2ySwM_368.376 Anthoceros agrestis HOM05D003913 ORTHO05D004803 2.5e-29 134.0 397 59.4
SGA_v2.0_scaffold114G31919 Striga asiatica HOM05D003913 ORTHO05D004803 2.5e-29 134.0 343 58.6
Solyc07g008860.3 Solanum lycopersicum HOM05D003913 ORTHO05D004803 3.2e-29 133.7 402 57.0
Sopen07g004790 Solanum pennellii HOM05D003913 ORTHO05D004803 4.2e-29 133.3 402 57.0
Nitab4.5_0002890g0010 Nicotiana tabacum HOM05D003913 ORTHO05D004803 5.5e-29 132.9 328 37.8
Pp3c14_20020 Physcomitrium patens HOM05D003913 ORTHO05D004803 4.6e-28 129.8 402 55.2
AUR62024845 Chenopodium quinoa HOM05D003913 ORTHO05D004803 1.8e-27 127.9 383 29.0
Migut.D01748 Erythranthe guttata HOM05D003913 ORTHO05D004803 3.9e-27 126.7 344 66.6
MBI10_g41322_MAGBIO Magnolia biondii HOM05D003913 ORTHO05D004803 5.1e-27 126.3 116 56.0
AUR62003626 Chenopodium quinoa HOM05D003913 ORTHO05D004803 6.7e-27 125.9 111 56.8
Migut.I00088 Erythranthe guttata HOM05D003913 ORTHO05D004803 8.8e-27 125.6 395 41.0
COL.COLO4_13734 Corchorus olitorius HOM05D003913 ORTHO05D004803 1.1e-26 125.2 337 38.6
AUR62001664 Chenopodium quinoa HOM05D003913 ORTHO05D004803 4.3e-26 123.2 347 28.2
DCAR_004603 Daucus carota HOM05D000366 ORTHO05D000437 5.7e-26 122.9 107 55.1
SMO347G0114 Selaginella moellendorffii HOM05D003913 ORTHO05D004803 5.7e-26 122.9 402 39.6
Actinidia33168 Actinidia chinensis HOM05D003898 ORTHO05D004642 3.7e-25 120.2 107 57.0
Mapoly0155s0005 Marchantia polymorpha HOM05D003913 ORTHO05D004803 4.8e-25 119.8 392 33.9
FAN20G2057 Fragaria x ananassa HOM05D003913 ORTHO05D004803 8.2e-25 119.0 311 52.7
Haze_17883 Corylus avellana HOM05D003913 ORTHO05D004803 1.1e-24 118.6 478 52.1
Psat6g019720 Pisum sativum HOM05D003913 ORTHO05D004803 3.1e-24 117.1 119 52.1
CARHR124080 Cardamine hirsuta HOM05D003913 ORTHO05D004803 7.7e-23 112.5 371 27.0
Eucgr.E02330 Eucalyptus grandis HOM05D003913 ORTHO05D004803 7.7e-23 112.5 285 69.1
Peaxi162Scf01838g00003 Petunia axillaris HOM05D000173 ORTHO05D000316 1.0e-22 112.1 119 52.9
Cpa.g.sc2399.1 Carica papaya HOM05D003913 ORTHO05D004803 1.3e-22 111.7 111 54.1
Glyma.10G218500 Glycine max HOM05D003913 ORTHO05D004803 1.7e-22 111.3 124 47.6
COL.COLO4_03395 Corchorus olitorius HOM05D003913 ORTHO05D004803 2.2e-22 110.9 112 53.6
TAR381G0993 Trochodendron aralioides HOM05D003913 ORTHO05D004803 2.2e-22 110.9 109 54.1
Glyma.09G057500 Glycine max HOM05D003913 ORTHO05D004803 1.1e-21 108.6 169 37.9
QL02p034830 Quercus lobata HOM05D003913 ORTHO05D004803 1.9e-21 107.8 104 54.8
CANSAT11G1897 Cannabis sativa HOM05D003913 ORTHO05D004803 4.7e-20 103.2 102 52.0
Glyma.10G218600 Glycine max HOM05D003913 ORTHO05D004803 1.0e-19 102.1 125 45.6
Cre12.g487200 Chlamydomonas reinhardtii HOM05D003913 ORTHO05D004803 1.4e-19 101.7 348 30.2
Psat6g021120 Pisum sativum HOM05D003913 ORTHO05D004803 3.0e-19 100.5 122 45.1
BolC6t38649H Brassica oleracea HOM05D003913 ORTHO05D004803 5.7e-18 96.3 112 45.5
Hma1.2p1_0276F.1_g111310 Hydrangea macrophylla HOM05D003913 ORTHO05D004803 2.2e-17 94.4 119 43.7
vmacro21210 Vaccinium macrocarpon HOM05D003913 ORTHO05D004803 1.5e-15 88.2 408 51.5
SMO367G0065 Selaginella moellendorffii HOM05D003913 ORTHO05D004803 5.5e-13 79.7 360 23.9
Medtr7g079470 Medicago truncatula HOM05D003913 ORTHO05D004803 7.2e-13 79.3 66 56.1
SMO343G0013 Selaginella moellendorffii HOM05D003913 ORTHO05D004803 7.2e-13 79.3 117 40.2
SHI13909 Sapria himalayana HOM05D003913 ORTHO05D004803 1.2e-12 78.6 93 43.0
Lj4C56G20 Lonicera japonica HOM05D003913 ORTHO05D004803 6.1e-12 76.3 61 59.0
PSO455G0073 Papaver somniferum HOM05D003913 ORTHO05D004803 1.0e-11 75.5 65 55.4
CBR_g49506 Chara braunii HOM05D003913 ORTHO05D004803 4.0e-11 73.6 396 56.3
Thecc.09G236800 Theobroma cacao HOM05D003913 ORTHO05D004803 2.0e-10 71.2 63 57.1
Cpa.g.sc66.118 Carica papaya HOM05D003913 ORTHO05D004411 2.8e-09 67.4 62 51.6
MCO10G384 Micromonas commoda HOM05D003913 ORTHO05D004803 3.7e-09 67.0 118 30.5
BolC6t38646H Brassica oleracea HOM05D003913 ORTHO05D004803 4.8e-09 66.6 115 36.5
Glyma.17G173200 Glycine max HOM05D003913 ORTHO05D004803 2.6e-07 60.8 44 59.1
BraA02t06789Z Brassica rapa HOM05D003913 ORTHO05D004803 1.7e-06 58.2 56 44.6
A02p17440 Brassica napus HOM05D003913 ORTHO05D004803 3.8e-06 57.0 56 44.6


User provided reference genes

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