Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_008031 Vanilla planifolia HOM05D003390 ORTHO05D004189 3.7e-238 827.8 408 100.0
MBI07_g07829_MAGBIO Magnolia biondii HOM05D003390 ORTHO05D004189 2.5e-109 399.8 324 59.9
MBI07_g35048_MAGBIO Magnolia biondii HOM05D003390 ORTHO05D004189 5.5e-109 398.7 322 59.6
Aqoxy1G01824 Aquilegia oxysepala HOM05D003390 ORTHO05D004189 1.4e-104 384.0 316 60.4
TAR386G0005 Trochodendron aralioides HOM05D003390 ORTHO05D004189 1.8e-104 383.6 305 61.0
TAR627G0573 Trochodendron aralioides HOM05D003390 ORTHO05D004189 1.6e-103 380.6 305 60.7
PGSC0003DMG400003171 Solanum tuberosum HOM05D003390 ORTHO05D004189 8.5e-102 374.8 324 57.7
Ciclev10014753m.g Citrus clementina HOM05D003390 ORTHO05D004189 3.6e-100 369.4 349 56.7
Sc05g0006540 Simmondsia chinensis HOM05D003390 ORTHO05D004189 1.8e-99 367.1 313 58.1
Rhsim12G0071900 Rhododendron simsii HOM05D003390 ORTHO05D004189 4.0e-99 365.9 366 52.5
TAR626G0692 Trochodendron aralioides HOM05D003390 ORTHO05D004189 5.2e-99 365.5 306 58.8
AUR62027570 Chenopodium quinoa HOM05D003390 ORTHO05D004189 1.5e-98 364.0 313 57.5
Manes.17G065600 Manihot esculenta HOM05D003390 ORTHO05D004189 3.4e-98 362.8 312 56.7
Nitab4.5_0001826g0010 Nicotiana tabacum HOM05D003390 ORTHO05D004189 3.4e-98 362.8 315 59.0
EL10Ac8g19781 Beta vulgaris HOM05D003390 ORTHO05D004189 5.7e-98 362.1 313 58.1
TWI09G1133 Tripterygium wilfordii HOM05D003390 ORTHO05D004189 5.7e-98 362.1 314 58.3
Ah.09g232910 Amaranthus hybridus HOM05D003390 ORTHO05D004189 1.3e-97 360.9 315 56.2
Thecc.06G156600 Theobroma cacao HOM05D003390 ORTHO05D004189 1.3e-97 360.9 305 59.0
DCAR_005073 Daucus carota HOM05D003390 ORTHO05D004189 2.8e-97 359.8 312 58.3
Lalb_Chr18g0057721 Lupinus albus HOM05D003390 ORTHO05D004189 3.7e-97 359.4 307 57.7
Sopen02g005990 Solanum pennellii HOM05D003390 ORTHO05D004189 3.7e-97 359.4 321 56.4
Nitab4.5_0000206g0100 Nicotiana tabacum HOM05D003390 ORTHO05D004189 6.3e-97 358.6 314 57.0
Dinv30696 Davidia involucrata HOM05D003390 ORTHO05D004189 2.4e-96 356.7 315 55.6
Ca_11357_v3 Cicer arietinum L. HOM05D003390 ORTHO05D004189 3.1e-96 356.3 298 61.1
Hund21490 Selenicereus undatus HOM05D003390 ORTHO05D004189 3.1e-96 356.3 312 57.4
AUR62035789 Chenopodium quinoa HOM05D003390 ORTHO05D004189 5.3e-96 355.5 313 55.9
Lj2A310T45 Lonicera japonica HOM05D003390 ORTHO05D004189 5.3e-96 355.5 309 57.6
QL05p060163 Quercus lobata HOM05D003390 ORTHO05D004189 5.3e-96 355.5 321 56.1
Lj1A1183G65 Lonicera japonica HOM05D003390 ORTHO05D004189 1.2e-95 354.4 308 56.8
Nn4g26479 Nelumbo nucifera HOM05D003390 ORTHO05D004189 1.2e-95 354.4 303 57.1
RcHm_v2.0_Chr5g0013021 Rosa chinensis HOM05D003390 ORTHO05D004189 2.0e-95 353.6 303 60.1
Migut.M00950 Erythranthe guttata HOM05D003390 ORTHO05D004189 2.7e-95 353.2 299 57.5
Rhsim06G0115300 Rhododendron simsii HOM05D003390 ORTHO05D004189 2.7e-95 353.2 307 58.3
VMungo0540G2227 Vigna mungo HOM05D003390 ORTHO05D004189 2.7e-95 353.2 412 48.1
Os01g0664100 Oryza sativa ssp. japonica HOM05D003390 ORTHO05D004189 5.9e-95 352.1 298 59.4
Gohir.A06G198200 Gossypium hirsutum HOM05D003390 ORTHO05D004189 7.7e-95 351.7 299 57.5
Eucgr.A01981 Eucalyptus grandis HOM05D003390 ORTHO05D004189 1.0e-94 351.3 297 57.9
Zm00001eb359660 Zea mays HOM05D003390 ORTHO05D004189 1.0e-94 351.3 298 56.4
Duzib192G0036 Durio zibethinus HOM05D003390 ORTHO05D004189 1.7e-94 350.5 305 57.7
Psat1g170120 Pisum sativum HOM05D003390 ORTHO05D004189 1.7e-94 350.5 390 49.0
Thecc.01G163000 Theobroma cacao HOM05D003390 ORTHO05D004189 1.7e-94 350.5 300 57.3
CiPaw.09G127300 Carya illinoinensis HOM05D003390 ORTHO05D004189 2.2e-94 350.1 316 56.3
Gorai.010G239900 Gossypium raimondii HOM05D003390 ORTHO05D004189 2.2e-94 350.1 299 57.2
CiPaw.09G127400 Carya illinoinensis HOM05D003390 ORTHO05D004189 2.9e-94 349.7 323 56.3
Gohir.D06G205600 Gossypium hirsutum HOM05D003390 ORTHO05D004189 2.9e-94 349.7 299 57.5
Prupe.4G074800 Prunus persica HOM05D003390 ORTHO05D004189 2.9e-94 349.7 320 57.2
Medtr2g028770 Medicago truncatula HOM05D003390 ORTHO05D004189 3.8e-94 349.4 401 47.6
Actinidia39555 Actinidia chinensis HOM05D003390 ORTHO05D004189 6.5e-94 348.6 300 57.0
COL.COLO4_08451 Corchorus olitorius HOM05D003390 ORTHO05D004189 6.5e-94 348.6 305 56.7
FvH4_3g06290 Fragaria vesca HOM05D003390 ORTHO05D004189 8.5e-94 348.2 298 59.4
Glyma.15G125900 Glycine max HOM05D003390 ORTHO05D004189 8.5e-94 348.2 305 57.4
FAN11G2053 Fragaria x ananassa HOM05D003390 ORTHO05D004189 1.1e-93 347.8 298 59.4
QL08p044424 Quercus lobata HOM05D003390 ORTHO05D004189 1.1e-93 347.8 306 56.9
PGR031G1555 Punica granatum HOM05D003390 ORTHO05D004189 1.5e-93 347.4 322 55.9
FAN16G0009 Fragaria x ananassa HOM05D003390 ORTHO05D004189 1.9e-93 347.1 298 59.4
Nitab4.5_0002209g0030 Nicotiana tabacum HOM05D003390 ORTHO05D004189 2.5e-93 346.7 301 56.1
PSO135G0210 Papaver somniferum HOM05D003390 ORTHO05D004189 2.5e-93 346.7 299 58.5
ECA234G1186 Erigeron canadensis HOM05D003390 ORTHO05D004189 3.2e-93 346.3 313 54.0
Sed0005552 Sechium edule HOM05D003390 ORTHO05D004189 3.2e-93 346.3 300 58.3
GSVIVG01021390001 Vitis vinifera HOM05D003390 ORTHO05D004189 3.2e-93 346.3 298 56.4
Cfa000990 Carpinus fangiana HOM05D003390 ORTHO05D004189 4.2e-93 345.9 356 52.2
FAN21G1255 Fragaria x ananassa HOM05D003390 ORTHO05D004189 5.5e-93 345.5 298 59.4
FAN25G2602 Fragaria x ananassa HOM05D003390 ORTHO05D004189 5.5e-93 345.5 298 58.7
CDE08G1393 Ceratophyllum demersum HOM05D003390 ORTHO05D004189 9.4e-93 344.7 338 53.8
SEGI_06697 Sequoiadendron giganteum HOM05D003390 ORTHO05D004189 1.2e-92 344.4 320 55.3
Cc09_g09610 Coffea canephora HOM05D003390 ORTHO05D004189 2.1e-92 343.6 298 58.4
MELO3C002711.2 Cucumis melo HOM05D003390 ORTHO05D004189 4.7e-92 342.4 297 56.2
DCAR_013317 Daucus carota HOM05D003390 ORTHO05D004189 4.7e-92 342.4 298 57.0
THA.LOC104820634 Tarenaya hassleriana HOM05D003390 ORTHO05D004189 4.7e-92 342.4 298 57.0
Psat2g016080 Pisum sativum HOM05D003390 ORTHO05D004189 6.1e-92 342.0 312 55.1
MSTRG.7463 Avicennia marina HOM05D003390 ORTHO05D004189 8.0e-92 341.7 309 53.7
CANSAT35G0642 Cannabis sativa HOM05D003390 ORTHO05D004189 8.0e-92 341.7 298 56.7
Cpa.g.sc17.128 Carica papaya HOM05D003390 ORTHO05D004189 8.0e-92 341.7 337 53.1
Ciclev10031790m.g Citrus clementina HOM05D003390 ORTHO05D004189 8.0e-92 341.7 314 53.5
Lj6g0006873 Lotus japonicus HOM05D003390 ORTHO05D004189 8.0e-92 341.7 303 57.8
Phvul.006G132300 Phaseolus vulgaris HOM05D003390 ORTHO05D004189 8.0e-92 341.7 390 48.5
SalBow8G0013 Salvia bowleyana HOM05D003390 ORTHO05D002303 8.0e-92 341.7 316 55.7
Gohir.A09G007100 Gossypium hirsutum HOM05D003390 ORTHO05D004189 1.4e-91 340.9 304 53.9
MD05G1290900 Malus domestica HOM05D003390 ORTHO05D004189 1.4e-91 340.9 299 57.2
MD10G1266700 Malus domestica HOM05D003390 ORTHO05D004189 1.4e-91 340.9 298 57.4
Peaxi162Scf00035g02617 Petunia axillaris HOM05D003390 ORTHO05D004189 1.8e-91 340.5 303 55.4
AL1G43660 Arabidopsis lyrata HOM05D003390 ORTHO05D004189 4.0e-91 339.3 302 57.6
PGR042G1945 Punica granatum HOM05D003390 ORTHO05D004189 5.2e-91 339.0 307 56.4
arahy.Tifrunner.gnm1.ann1.0JHG5Q Arachis hypogaea HOM05D003390 ORTHO05D004189 6.8e-91 338.6 305 53.8
AT1G29820 Arabidopsis thaliana HOM05D003390 ORTHO05D004189 8.8e-91 338.2 302 57.3
arahy.Tifrunner.gnm1.ann1.VAF4MI Arachis hypogaea HOM05D003390 ORTHO05D004189 8.8e-91 338.2 305 53.8
Gohir.D09G006300 Gossypium hirsutum HOM05D003390 ORTHO05D004189 8.8e-91 338.2 304 53.6
Gorai.006G007900 Gossypium raimondii HOM05D003390 ORTHO05D004189 8.8e-91 338.2 304 53.6
Aa31LG6G5840 Aethionema arabicum HOM05D003390 ORTHO05D004189 2.6e-90 336.7 301 57.1
Peaxi162Scf00121g00231 Petunia axillaris HOM05D003390 ORTHO05D004189 2.6e-90 336.7 312 54.5
SGA_v2.0_scaffold333G49014 Striga asiatica HOM05D003390 ORTHO05D004189 2.6e-90 336.7 301 57.5
Carub.0001s2807 Capsella rubella HOM05D003390 ORTHO05D004189 3.4e-90 336.3 300 57.0
CsaV3_1G032710 Cucumis sativus L. HOM05D003390 ORTHO05D004189 4.4e-90 335.9 300 56.3
Sopen10g003650 Solanum pennellii HOM05D003390 ORTHO05D004189 9.8e-90 334.7 302 53.6
TPR.G12521 Trifolium pratense HOM05D003390 ORTHO05D004189 9.8e-90 334.7 300 54.7
HanXRQChr16g0525801 Helianthus annuus HOM05D003390 ORTHO05D004189 1.3e-89 334.3 305 54.1
CARHR029610 Cardamine hirsuta HOM05D003390 ORTHO05D004189 1.7e-89 334.0 301 55.8
arahy.Tifrunner.gnm1.ann1.QBP2NG Arachis hypogaea HOM05D003390 ORTHO05D004189 2.2e-89 333.6 305 54.8
arahy.Tifrunner.gnm1.ann1.WT2YK3 Arachis hypogaea HOM05D003390 ORTHO05D004189 2.2e-89 333.6 305 54.8
Solyc10g007740.3 Solanum lycopersicum HOM05D003390 ORTHO05D004189 2.2e-89 333.6 302 53.3
Medtr5g091570 Medicago truncatula HOM05D003390 ORTHO05D004189 2.8e-89 333.2 322 52.5
unitig_748.g7439 Utricularia gibba HOM05D003390 ORTHO05D004189 2.8e-89 333.2 310 54.5
PGSC0003DMG400021242 Solanum tuberosum HOM05D003390 ORTHO05D004189 3.7e-89 332.8 302 53.3
CAN.G2018.1 Capsicum annuum HOM05D003390 ORTHO05D004189 4.8e-89 332.4 309 53.7
SalBow7G4851 Salvia bowleyana HOM05D003390 ORTHO05D004189 6.3e-89 332.0 304 54.6
SGA_v2.0_scaffold4G02117 Striga asiatica HOM05D003390 ORTHO05D004189 6.3e-89 332.0 297 56.2
BolC3t19880H Brassica oleracea HOM05D003390 ORTHO05D004189 8.3e-89 331.6 313 55.9
Lj1A614G6 Lonicera japonica HOM05D003390 ORTHO05D004189 8.3e-89 331.6 315 54.9
BcaB03g12182 Brassica carinata HOM05D003390 ORTHO05D004189 1.4e-88 330.9 302 56.3
Lsat_1_v5_gn_4_29721 Lactuca sativa HOM05D003390 ORTHO05D004189 1.4e-88 330.9 309 53.7
LjContig00049g0028197 Lotus japonicus HOM05D003390 ORTHO05D004189 2.4e-88 330.1 297 54.9
Potri.001G353000 Populus trichocarpa HOM05D003390 ORTHO05D004189 3.1e-88 329.7 298 56.7
vmacro12466 Vaccinium macrocarpon HOM05D003390 ORTHO05D004189 3.1e-88 329.7 312 55.1
BcaC01g00142 Brassica carinata HOM05D003390 ORTHO05D004189 9.1e-88 328.2 298 57.7
C03p76240 Brassica napus HOM05D003390 ORTHO05D004189 9.1e-88 328.2 298 57.7
A08p24810 Brassica napus HOM05D003390 ORTHO05D004189 1.2e-87 327.8 298 57.4
BraA08t34436Z Brassica rapa HOM05D003390 ORTHO05D004189 1.2e-87 327.8 298 57.4
Thhalv10007315m.g Eutrema salsugineum HOM05D003390 ORTHO05D004189 1.2e-87 327.8 298 56.0
ATR1131G058 Amborella trichopoda HOM05D003390 ORTHO05D004189 1.6e-87 327.4 220 68.2
Sp1g25730 Schrenkiella parvula HOM05D003390 ORTHO05D004189 1.6e-87 327.4 298 56.7
Eucgr.D00339 Eucalyptus grandis HOM05D003390 ORTHO05D004189 2.7e-87 326.6 302 56.0
Prupe.3G173900 Prunus persica HOM05D003390 ORTHO05D004189 3.5e-87 326.2 315 54.6
Ca_06279_v3 Cicer arietinum L. HOM05D003390 ORTHO05D004189 7.7e-87 325.1 313 52.1
Ca_30614_v3 Cicer arietinum L. HOM05D003390 ORTHO05D004189 7.7e-87 325.1 313 52.1
Cc05_g09550 Coffea canephora HOM05D003390 ORTHO05D004189 1.3e-86 324.3 326 50.3
AT1G29830 Arabidopsis thaliana HOM05D003390 ORTHO05D004189 2.9e-86 323.2 302 55.3
Oeu020929.2 Olea europaea HOM05D003390 ORTHO05D004189 2.5e-85 320.1 317 53.9
FvH4_6g38330 Fragaria vesca HOM05D003390 ORTHO05D004189 5.5e-85 318.9 320 53.1
Aa31LG1G24700 Aethionema arabicum HOM05D003390 ORTHO05D004189 9.5e-85 318.2 299 55.2
CARHR138010 Cardamine hirsuta HOM05D003390 ORTHO05D004189 1.6e-84 317.4 302 55.0
Haze_13511 Corylus avellana HOM05D003390 ORTHO05D004189 2.1e-84 317.0 329 50.2
BNapus_Darmor_BZH_scaffold_64p00180 Brassica napus HOM05D003390 ORTHO05D004189 1.4e-83 314.3 297 53.5
AT2G42950 Arabidopsis thaliana HOM05D003390 ORTHO05D004189 3.0e-83 313.2 298 53.4
Thhalv10016539m.g Eutrema salsugineum HOM05D003390 ORTHO05D004189 3.0e-83 313.2 300 54.0
Lalb_Chr10g0106641 Lupinus albus HOM05D003390 ORTHO05D004189 3.0e-83 313.2 319 52.0
HanXRQChr05g0147821 Helianthus annuus HOM05D003390 ORTHO05D004189 4.0e-83 312.8 388 43.8
BraA04t18699Z Brassica rapa HOM05D003390 ORTHO05D004189 6.8e-83 312.0 297 52.9
Sp4g25080 Schrenkiella parvula HOM05D003390 ORTHO05D004189 7.5e-82 308.5 298 53.0
ECA232G3556 Erigeron canadensis HOM05D003390 ORTHO05D004189 9.8e-82 308.1 410 42.9
MD16G1203400 Malus domestica HOM05D003390 ORTHO05D004189 1.7e-81 307.4 196 71.9
BolC4t28499H Brassica oleracea HOM05D003390 ORTHO05D004189 3.7e-81 306.2 301 52.5
Glyma.02G285600 Glycine max HOM05D003390 ORTHO05D004189 3.7e-81 306.2 296 54.7
Lsat_1_v5_gn_0_8061 Lactuca sativa HOM05D003390 ORTHO05D004189 8.3e-81 305.1 308 51.3
C04p69990 Brassica napus HOM05D003390 ORTHO05D004189 1.4e-80 304.3 298 53.0
BcaC02g07214 Brassica carinata HOM05D003390 ORTHO05D004189 1.8e-80 303.9 298 52.7
Migut.H02104 Erythranthe guttata HOM05D003390 ORTHO05D004189 9.2e-80 301.6 281 55.5
Nitab4.5_0003104g0070 Nicotiana tabacum HOM05D003390 ORTHO05D004189 9.2e-80 301.6 273 53.8
Haze_05526 Corylus avellana HOM05D003390 ORTHO05D004189 1.2e-79 301.2 319 51.1
Carub.0004s2542 Capsella rubella HOM05D003390 ORTHO05D004189 4.5e-79 299.3 198 70.7
BcaB06g29273 Brassica carinata HOM05D003390 ORTHO05D004189 7.8e-79 298.5 199 70.4
FAN14G5098 Fragaria x ananassa HOM05D003390 ORTHO05D004189 3.9e-78 296.2 303 53.5
Os01g0601000 Oryza sativa ssp. japonica HOM05D003390 ORTHO05D004189 7.3e-77 292.0 314 52.2
TPR.G17499 Trifolium pratense HOM05D003390 ORTHO05D004189 2.1e-76 290.4 298 52.3
AagrBONN_evm.TU.Sc2ySwM_228.3525 Anthoceros agrestis HOM05D003390 ORTHO05D004189 6.1e-76 288.9 302 48.7
Mapoly0130s0010 Marchantia polymorpha HOM05D003390 ORTHO05D004189 9.8e-74 281.6 325 48.6
Eucgr.A01987 Eucalyptus grandis HOM05D003390 ORTHO05D004189 5.0e-70 269.2 265 51.3
MD17G1138500 Malus domestica HOM05D003390 ORTHO05D004189 1.9e-69 267.3 180 70.6
Pp3c9_12460 Physcomitrium patens HOM05D003390 ORTHO05D004189 4.3e-69 266.2 331 44.4
RcHm_v2.0_Chr2g0151641 Rosa chinensis HOM05D003390 ORTHO05D004189 6.2e-68 262.3 319 45.1
Pp3c9_16960 Physcomitrium patens HOM05D003390 ORTHO05D004189 2.6e-66 256.9 235 53.2
Pp3c15_4880 Physcomitrium patens HOM05D003390 ORTHO05D004189 3.4e-66 256.5 323 42.1
Actinidia07674 Actinidia chinensis HOM05D003390 ORTHO05D004189 3.5e-63 246.5 207 58.5
AL4G41580 Arabidopsis lyrata HOM05D003390 ORTHO05D004189 3.1e-59 233.4 335 43.0
FvH4_1g24850 Fragaria vesca HOM05D003390 ORTHO05D004189 4.6e-55 219.5 297 43.4
FAN19G1589 Fragaria x ananassa HOM05D003390 ORTHO05D004189 6.0e-55 219.2 297 43.4
FAN26G2057 Fragaria x ananassa HOM05D003390 ORTHO05D004189 3.3e-53 213.4 195 56.9
Atru.chr6.2081 Acer truncatum HOM05D003390 ORTHO05D018142 3.6e-52 209.9 220 51.8
Solyc00g500373.1 Solanum lycopersicum HOM05D003390 ORTHO05D018142 6.2e-52 209.1 226 46.0
Solyc02g021490.1 Solanum lycopersicum HOM05D003390 ORTHO05D018142 6.2e-52 209.1 226 46.0
ClCG03G007130 Citrullus lanatus HOM05D003390 ORTHO05D004189 5.2e-51 206.1 308 38.6
Duzib187G0551 Durio zibethinus HOM05D003390 ORTHO05D018142 7.6e-50 202.2 302 38.1
Sabra16G0232300 Salix brachista HOM05D003390 ORTHO05D004189 2.9e-49 200.3 115 84.3
TPR.G7093 Trifolium pratense HOM05D003390 ORTHO05D004189 2.9e-49 200.3 187 55.1
COL.COLO4_07486 Corchorus olitorius HOM05D003390 ORTHO05D018142 1.2e-47 194.9 215 47.9
TPR.G10814 Trifolium pratense HOM05D003390 ORTHO05D018142 3.5e-47 193.4 211 49.8
Glyma.09G019602 Glycine max HOM05D003390 ORTHO05D018142 1.4e-43 181.4 211 47.9
Eucgr.A01984 Eucalyptus grandis HOM05D003390 ORTHO05D004189 3.8e-41 173.3 212 46.7
Atru.chr10.1373 Acer truncatum HOM05D003390 ORTHO05D018142 2.1e-39 167.5 192 45.3
FAN09G2932 Fragaria x ananassa HOM05D003390 ORTHO05D004189 7.9e-39 165.6 317 37.5
Oeu001052.1 Olea europaea HOM05D003390 ORTHO05D004189 1.7e-38 164.5 118 69.5
Atru.chr10.1372 Acer truncatum HOM05D003390 ORTHO05D004189 3.9e-38 163.3 199 48.2
Cpa.g.sc50.94 Carica papaya HOM05D003390 ORTHO05D004189 1.6e-36 157.9 97 76.3
TPR.G17505 Trifolium pratense HOM05D003390 ORTHO05D004189 6.2e-36 156.0 190 46.8
MD03G1022500 Malus domestica HOM05D003390 ORTHO05D004189 9.9e-34 148.7 102 70.6
vmacro15692 Vaccinium macrocarpon HOM05D000244 ORTHO05D000179 3.5e-31 140.2 118 61.0
PSO541G3465 Papaver somniferum HOM05D003390 ORTHO05D004189 6.0e-23 112.8 92 59.8


User provided reference genes

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