Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_007929 Vanilla planifolia HOM05D000585 ORTHO05D003019 1.2e-141 506.5 264 100.0
HPP92_007954 Vanilla planifolia HOM05D000585 ORTHO05D003019 3.6e-77 292.4 213 75.1
TAR362G0507 Trochodendron aralioides HOM05D000585 ORTHO05D003019 1.0e-31 141.4 210 47.1
MBI11_g04238_MAGBIO Magnolia biondii HOM05D000585 ORTHO05D003019 8.1e-29 131.7 196 46.4
MBI11_g35088_MAGBIO Magnolia biondii HOM05D000585 ORTHO05D003019 3.1e-28 129.8 196 45.9
PSO170G4407 Papaver somniferum HOM05D000585 ORTHO05D003019 3.1e-28 129.8 221 43.0
PSO210G2806 Papaver somniferum HOM05D000585 ORTHO05D003019 4.0e-28 129.4 224 43.3
Thecc.04G237400 Theobroma cacao HOM05D000585 ORTHO05D003019 2.6e-27 126.7 202 46.0
Manes.15G032200 Manihot esculenta HOM05D000585 ORTHO05D003019 5.8e-27 125.6 217 42.4
Duzib052G0772 Durio zibethinus HOM05D000585 ORTHO05D003019 9.9e-27 124.8 229 42.4
Nn6g34148 Nelumbo nucifera HOM05D000585 ORTHO05D003019 1.3e-26 124.4 207 42.5
Haze_11226 Corylus avellana HOM05D000585 ORTHO05D003019 1.7e-26 124.0 217 41.0
Cc03_g04190 Coffea canephora HOM05D000585 ORTHO05D003019 4.9e-26 122.5 217 41.5
TWI09G0946 Tripterygium wilfordii HOM05D000585 ORTHO05D003019 6.4e-26 122.1 217 43.3
FAN22G2234 Fragaria x ananassa HOM05D000585 ORTHO05D003019 2.4e-25 120.2 218 42.7
QL06p001313 Quercus lobata HOM05D000585 ORTHO05D003019 2.4e-25 120.2 219 42.5
Duzib212G0580 Durio zibethinus HOM05D000585 ORTHO05D003019 3.2e-25 119.8 223 43.0
Ciclev10004919m.g Citrus clementina HOM05D000585 ORTHO05D003019 4.2e-25 119.4 218 39.9
Cfa008456 Carpinus fangiana HOM05D000585 ORTHO05D003019 7.1e-25 118.6 216 40.7
CiPaw.01G196600 Carya illinoinensis HOM05D000585 ORTHO05D003019 7.1e-25 118.6 208 42.3
Dinv14037 Davidia involucrata HOM05D000585 ORTHO05D003019 1.6e-24 117.5 217 44.2
RcHm_v2.0_Chr4g0387551 Rosa chinensis HOM05D000585 ORTHO05D003019 2.1e-24 117.1 200 44.0
Lalb_Chr03g0037411 Lupinus albus HOM05D000585 ORTHO05D003019 2.7e-24 116.7 214 39.7
Prupe.1G020000 Prunus persica HOM05D000585 ORTHO05D003019 2.7e-24 116.7 199 43.2
CSS0004802 Camellia sinensis var. sinensis HOM05D000585 ORTHO05D003019 3.5e-24 116.3 188 42.0
FvH4_4g01000 Fragaria vesca HOM05D000585 ORTHO05D003019 3.5e-24 116.3 252 39.7
FAN12G2946 Fragaria x ananassa HOM05D000585 ORTHO05D003019 4.6e-24 115.9 252 39.7
FAN17G1106 Fragaria x ananassa HOM05D000585 ORTHO05D003019 1.3e-23 114.4 251 39.0
Aqoxy2G03447 Aquilegia oxysepala HOM05D000585 ORTHO05D003019 2.3e-23 113.6 217 43.3
Oeu053307.1 Olea europaea HOM05D000585 ORTHO05D003019 2.3e-23 113.6 207 40.1
Rhsim02G0028400 Rhododendron simsii HOM05D000585 ORTHO05D003019 3.0e-23 113.2 227 41.0
COL.COLO4_21550 Corchorus olitorius HOM05D000585 ORTHO05D003019 5.1e-23 112.5 228 41.2
Nitab4.5_0005470g0010 Nicotiana tabacum HOM05D000585 ORTHO05D003019 5.1e-23 112.5 213 38.0
Actinidia08468 Actinidia chinensis HOM05D000585 ORTHO05D003019 6.7e-23 112.1 202 42.1
CANSAT78G1820 Cannabis sativa HOM05D000585 ORTHO05D003019 1.1e-22 111.3 213 38.5
TWI73G1076 Tripterygium wilfordii HOM05D000585 ORTHO05D003019 1.5e-22 110.9 254 38.6
Nitab4.5_0000085g0220 Nicotiana tabacum HOM05D000585 ORTHO05D003019 3.3e-22 109.8 218 37.6
Atru.chr4.2401 Acer truncatum HOM05D000585 ORTHO05D003019 4.3e-22 109.4 216 40.3
ATR0665G458 Amborella trichopoda HOM05D000585 ORTHO05D003019 4.3e-22 109.4 221 41.2
CAN.G1402.14 Capsicum annuum HOM05D000585 ORTHO05D003019 5.6e-22 109.0 220 36.8
AUR62034701 Chenopodium quinoa HOM05D000585 ORTHO05D003019 9.6e-22 108.2 193 41.5
TAR636G3099 Trochodendron aralioides HOM05D000585 ORTHO05D003019 9.6e-22 108.2 216 39.4
Aqoxy5G00416 Aquilegia oxysepala HOM05D000585 ORTHO05D003019 1.3e-21 107.8 238 36.6
Manes.03G173900 Manihot esculenta HOM05D000585 ORTHO05D003019 2.1e-21 107.1 209 38.3
Potri.010G082600 Populus trichocarpa HOM05D000585 ORTHO05D003019 2.1e-21 107.1 189 41.3
MSTRG.4056 Avicennia marina HOM05D000585 ORTHO05D003019 2.8e-21 106.7 199 38.7
Eucgr.B00932 Eucalyptus grandis HOM05D000585 ORTHO05D003019 2.8e-21 106.7 212 39.6
Eucgr.B01029 Eucalyptus grandis HOM05D000585 ORTHO05D003019 2.8e-21 106.7 212 39.6
Actinidia18531 Actinidia chinensis HOM05D000585 ORTHO05D003019 3.7e-21 106.3 224 38.4
CSS0013848 Camellia sinensis var. sinensis HOM05D000585 ORTHO05D003019 3.7e-21 106.3 136 48.5
EL10Ac3g06460 Beta vulgaris HOM05D000585 ORTHO05D003019 4.8e-21 105.9 232 38.8
Atru.chr4.2377 Acer truncatum HOM05D000585 ORTHO05D003019 6.2e-21 105.5 215 40.0
MD16G1198400 Malus domestica HOM05D000585 ORTHO05D003019 8.1e-21 105.1 214 41.6
Sabra08G0119300 Salix brachista HOM05D000585 ORTHO05D003019 1.8e-20 104.0 233 39.1
Cpa.g.sc44.113 Carica papaya HOM05D000585 ORTHO05D003019 2.4e-20 103.6 219 41.6
MD13G1198300 Malus domestica HOM05D000585 ORTHO05D003019 3.1e-20 103.2 216 41.7
Potri.008G156700 Populus trichocarpa HOM05D000585 ORTHO05D003019 3.1e-20 103.2 211 37.0
PGR142G1588 Punica granatum HOM05D000585 ORTHO05D003019 4.0e-20 102.8 213 40.4
Ca_12152_v3 Cicer arietinum L. HOM05D000585 ORTHO05D003019 9.0e-20 101.7 215 35.3
Phvul.007G060900 Phaseolus vulgaris HOM05D000585 ORTHO05D003019 9.0e-20 101.7 213 39.4
Sopen09g031420 Solanum pennellii HOM05D000585 ORTHO05D003019 9.0e-20 101.7 212 36.8
VMungo0720G1515 Vigna mungo HOM05D000585 ORTHO05D003019 9.0e-20 101.7 216 39.8
PSO832G2375 Papaver somniferum HOM05D000585 ORTHO05D003019 1.2e-19 101.3 215 37.2
Glyma.20G149600 Glycine max HOM05D000585 ORTHO05D003019 2.6e-19 100.1 207 39.1
TAR365G0441 Trochodendron aralioides HOM05D000585 ORTHO05D003019 2.6e-19 100.1 216 36.1
Peaxi162Scf00316g01115 Petunia axillaris HOM05D000585 ORTHO05D003019 4.5e-19 99.4 154 40.9
Sabra10G0060500 Salix brachista HOM05D000585 ORTHO05D003019 4.5e-19 99.4 210 39.0
Medtr1g103070 Medicago truncatula HOM05D000585 ORTHO05D003019 5.8e-19 99.0 210 39.5
PSO210G6900 Papaver somniferum HOM05D000585 ORTHO05D003019 5.8e-19 99.0 238 37.4
Ca_10859_v3 Cicer arietinum L. HOM05D000585 ORTHO05D003019 1.0e-18 98.2 216 39.4
Glyma.10G003700 Glycine max HOM05D000585 ORTHO05D003019 2.2e-18 97.1 191 40.3
Hund12091 Selenicereus undatus HOM05D000585 ORTHO05D003019 2.2e-18 97.1 225 36.9
Solyc09g082560.4 Solanum lycopersicum HOM05D000585 ORTHO05D003019 2.9e-18 96.7 207 35.7
TPR.G25172 Trifolium pratense HOM05D000585 ORTHO05D003019 2.9e-18 96.7 242 34.3
CsaV3_3G012950 Cucumis sativus L. HOM05D000585 ORTHO05D003019 8.4e-18 95.1 219 37.4
Lj3A729T49 Lonicera japonica HOM05D000585 ORTHO05D003019 1.1e-17 94.7 195 40.5
MSTRG.9956 Avicennia marina HOM05D000585 ORTHO05D003019 2.5e-17 93.6 225 36.0
Glyma.10G245000 Glycine max HOM05D000585 ORTHO05D003019 2.5e-17 93.6 264 35.2
DCAR_030682 Daucus carota HOM05D000585 ORTHO05D003019 3.2e-17 93.2 189 41.3
Lj5g0007146 Lotus japonicus HOM05D000585 ORTHO05D003019 3.2e-17 93.2 267 33.7
ClCG05G004910 Citrullus lanatus HOM05D000585 ORTHO05D003019 4.2e-17 92.8 210 37.1
Glyma.02G004600 Glycine max HOM05D000585 ORTHO05D003019 7.1e-17 92.0 215 37.2
TPR.G26099 Trifolium pratense HOM05D000585 ORTHO05D003019 9.3e-17 91.7 212 36.3
CDE10G0243 Ceratophyllum demersum HOM05D000585 ORTHO05D003019 1.2e-16 91.3 205 37.6
AUR62043724 Chenopodium quinoa HOM05D000585 ORTHO05D003019 1.2e-16 91.3 193 37.8
Medtr1g041430 Medicago truncatula HOM05D000585 ORTHO05D003019 1.2e-16 91.3 236 33.5
arahy.Tifrunner.gnm1.ann1.F73KQI Arachis hypogaea HOM05D000585 ORTHO05D003019 2.7e-16 90.1 208 37.0
VMungo0720G0766 Vigna mungo HOM05D000585 ORTHO05D003019 2.7e-16 90.1 215 37.2
Psat6g104080 Pisum sativum HOM05D000585 ORTHO05D003019 3.5e-16 89.7 254 33.1
arahy.Tifrunner.gnm1.ann1.MLEZ7Y Arachis hypogaea HOM05D000585 ORTHO05D003019 4.6e-16 89.4 217 36.9
GSVIVG01018029001 Vitis vinifera HOM05D000585 ORTHO05D003019 4.6e-16 89.4 208 35.1
Zm00001eb050910 Zea mays HOM05D000585 ORTHO05D003019 1.0e-15 88.2 223 35.4
Ah.01g018370 Amaranthus hybridus HOM05D000585 ORTHO05D003019 1.3e-15 87.8 148 42.6
Psat6g205440 Pisum sativum HOM05D000585 ORTHO05D003019 1.3e-15 87.8 211 35.1
CDE10G0737 Ceratophyllum demersum HOM05D000585 ORTHO05D003019 1.8e-15 87.4 203 36.5
Lalb_Chr02g0140691 Lupinus albus HOM05D000585 ORTHO05D003019 3.0e-15 86.7 210 38.1
MELO3C006504.2 Cucumis melo HOM05D000585 ORTHO05D003019 5.1e-15 85.9 217 35.5
Oeu008863.2 Olea europaea HOM05D000585 ORTHO05D003019 1.1e-14 84.7 208 35.1
Migut.G00377 Erythranthe guttata HOM05D000585 ORTHO05D003019 5.7e-14 82.4 214 36.4
Phvul.007G277500 Phaseolus vulgaris HOM05D000585 ORTHO05D003019 5.7e-14 82.4 212 34.9
arahy.Tifrunner.gnm1.ann1.52TGP1 Arachis hypogaea HOM05D000585 ORTHO05D003019 7.4e-14 82.0 230 34.8
arahy.Tifrunner.gnm1.ann1.D45XKE Arachis hypogaea HOM05D000585 ORTHO05D003019 7.4e-14 82.0 230 34.8
Sc13g0004650 Simmondsia chinensis HOM05D000585 ORTHO05D003019 9.6e-14 81.6 100 50.0
unitig_748.g7304 Utricularia gibba HOM05D000585 ORTHO05D003019 1.3e-13 81.3 217 36.4
PGSC0003DMG400006444 Solanum tuberosum HOM05D000585 ORTHO05D003019 1.6e-13 80.9 122 41.8
ClCG06G006420 Citrullus lanatus HOM05D000585 ORTHO05D003019 6.3e-13 79.0 214 35.0
MELO3C014290.2 Cucumis melo HOM05D000585 ORTHO05D003019 1.4e-12 77.8 209 34.9
Gohir.A09G218500 Gossypium hirsutum HOM05D000585 ORTHO05D003019 1.4e-12 77.8 213 32.4
Gohir.D09G220820 Gossypium hirsutum HOM05D000585 ORTHO05D003019 1.4e-12 77.8 215 32.6
CiPaw.02G121900 Carya illinoinensis HOM05D000585 ORTHO05D003019 2.4e-12 77.0 99 48.5
Gorai.006G241800 Gossypium raimondii HOM05D000585 ORTHO05D003019 6.9e-12 75.5 240 30.0
Sed0022543 Sechium edule HOM05D000585 ORTHO05D003019 9.0e-12 75.1 197 34.5
Aa31LG9G2620 Aethionema arabicum HOM05D000585 ORTHO05D003019 1.2e-11 74.7 191 35.1
CsaV3_2G013480 Cucumis sativus L. HOM05D000585 ORTHO05D003019 7.6e-11 72.0 208 34.6
Duzib151G0899 Durio zibethinus HOM05D000585 ORTHO05D003019 1.0e-10 71.6 88 51.1
unitig_748.g8331 Utricularia gibba HOM05D000585 ORTHO05D003019 1.3e-10 71.2 199 34.2
vmacro08363 Vaccinium macrocarpon HOM05D000585 ORTHO05D003019 5.0e-10 69.3 215 31.6
Rhsim04G0198800 Rhododendron simsii HOM05D000585 ORTHO05D003019 8.5e-10 68.6 217 30.4
Dinv44569 Davidia involucrata HOM05D000585 ORTHO05D003019 2.5e-09 67.0 137 36.5
Sed0026798 Sechium edule HOM05D000585 ORTHO05D003019 4.2e-09 66.2 231 32.0
THA.LOC104803054 Tarenaya hassleriana HOM05D000585 ORTHO05D003019 1.6e-08 64.3 200 28.5
THA.LOC104827553 Tarenaya hassleriana HOM05D000585 ORTHO05D003019 1.6e-08 64.3 200 28.5
Os03g0636700 Oryza sativa ssp. japonica HOM05D000585 ORTHO05D003019 4.6e-08 62.8 216 29.6
THA.LOC104822514 Tarenaya hassleriana HOM05D000585 ORTHO05D003019 7.9e-08 62.0 191 30.9
DCAR_027238 Daucus carota HOM05D000585 ORTHO05D003019 1.8e-07 60.8 209 28.7
PGR004G0742 Punica granatum HOM05D000585 ORTHO05D003019 1.8e-07 60.8 220 29.5
Os03g0161400 Oryza sativa ssp. japonica HOM05D000585 ORTHO05D003019 3.0e-07 60.1 211 29.4
Gorai.011G167700 Gossypium raimondii HOM05D000585 ORTHO05D003019 3.9e-07 59.7 93 38.7
Sp7g12880 Schrenkiella parvula HOM05D000585 ORTHO05D003019 1.1e-06 58.2 188 30.9
A08p11460 Brassica napus HOM05D000585 ORTHO05D003019 1.5e-06 57.8 197 29.9
BraA08t33140Z Brassica rapa HOM05D000585 ORTHO05D003019 1.5e-06 57.8 197 29.9
CDE06G1490 Ceratophyllum demersum HOM05D000585 ORTHO05D003019 1.5e-06 57.8 198 27.3
BcaB04g18260 Brassica carinata HOM05D000585 ORTHO05D003019 1.9e-06 57.4 197 29.9
BcaC07g37850 Brassica carinata HOM05D000585 ORTHO05D003019 1.9e-06 57.4 197 29.9
BolC8t48241H Brassica oleracea HOM05D000585 ORTHO05D003019 1.9e-06 57.4 197 29.9
CARHR221250 Cardamine hirsuta HOM05D000585 ORTHO05D003019 1.9e-06 57.4 189 31.2
vmacro15367 Vaccinium macrocarpon HOM05D000585 ORTHO05D003019 1.9e-06 57.4 81 48.1
CDE07G1410 Ceratophyllum demersum HOM05D000585 ORTHO05D003019 3.3e-06 56.6 199 27.6
MSTRG.21871 Avicennia marina HOM05D000585 ORTHO05D003019 4.3e-06 56.2 203 26.6
AT4G14750 Arabidopsis thaliana HOM05D000585 ORTHO05D003019 5.7e-06 55.8 197 29.4
Thhalv10025526m.g Eutrema salsugineum HOM05D000585 ORTHO05D003019 7.4e-06 55.5 196 30.6


User provided reference genes

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