Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_007908 Vanilla planifolia HOM05D001846 ORTHO05D005785 2.4e-207 725.3 377 100.0
Zm00001eb400050 Zea mays HOM05D001846 ORTHO05D005785 7.8e-41 172.2 423 32.9
TAR369G0438 Trochodendron aralioides HOM05D001846 ORTHO05D005785 1.0e-37 161.8 351 35.9
GSVIVG01025241001 Vitis vinifera HOM05D001846 ORTHO05D005785 1.4e-37 161.4 387 33.6
Nn7g36246 Nelumbo nucifera HOM05D001846 ORTHO05D005785 2.0e-36 157.5 313 37.7
CDE05G0547 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 3.4e-36 156.8 371 32.3
QL01p004534 Quercus lobata HOM05D001846 ORTHO05D005785 5.7e-36 156.0 392 31.6
QL01p004435 Quercus lobata HOM05D001846 ORTHO05D005785 2.9e-35 153.7 392 31.1
Lj3g0017471 Lotus japonicus HOM05D001846 ORTHO05D005785 1.4e-34 151.4 302 33.8
CiPaw.14G118000 Carya illinoinensis HOM05D001846 ORTHO05D005785 3.2e-34 150.2 393 32.1
Zm00001eb008800 Zea mays HOM05D001846 ORTHO05D005785 4.1e-34 149.8 425 31.1
Glyma.11G093300 Glycine max HOM05D001846 ORTHO05D005785 7.0e-34 149.1 399 31.3
Dinv36247 Davidia involucrata HOM05D001846 ORTHO05D005785 4.6e-33 146.4 305 36.1
Atru.chr3.2697 Acer truncatum HOM05D001846 ORTHO05D005785 5.9e-33 146.0 392 32.1
Ciclev10014939m.g Citrus clementina HOM05D001846 ORTHO05D005785 5.9e-33 146.0 393 31.8
PSO700G0220 Papaver somniferum HOM05D001846 ORTHO05D005785 7.8e-33 145.6 331 33.5
CiPaw.13G159200 Carya illinoinensis HOM05D001846 ORTHO05D005785 1.0e-32 145.2 386 32.1
Manes.14G003700 Manihot esculenta HOM05D001846 ORTHO05D005785 1.7e-32 144.4 363 31.4
Glyma.12G019500 Glycine max HOM05D001846 ORTHO05D005785 2.3e-32 144.1 386 30.3
Potri.009G052400 Populus trichocarpa HOM05D001846 ORTHO05D005785 6.6e-32 142.5 348 33.9
TAR369G0720 Trochodendron aralioides HOM05D001846 ORTHO05D005785 6.6e-32 142.5 279 38.4
VMungo1127G1936 Vigna mungo HOM05D001846 ORTHO05D005785 6.6e-32 142.5 392 31.4
Solyc11g065630.3 Solanum lycopersicum HOM05D001846 ORTHO05D005785 1.9e-31 141.0 260 37.3
Sopen11g025350 Solanum pennellii HOM05D001846 ORTHO05D005785 2.5e-31 140.6 262 36.6
Phvul.011G021900 Phaseolus vulgaris HOM05D001846 ORTHO05D005785 3.3e-31 140.2 302 33.1
Cpa.g.sc84.42 Carica papaya HOM05D001846 ORTHO05D005785 7.3e-31 139.0 387 30.0
HanXRQChr13g0401091 Helianthus annuus HOM05D001846 ORTHO05D005785 7.3e-31 139.0 296 34.5
Manes.06G163200 Manihot esculenta HOM05D001846 ORTHO05D005785 9.5e-31 138.7 297 35.0
Dinv22169 Davidia involucrata HOM05D001846 ORTHO05D005785 2.1e-30 137.5 305 33.1
PSO170G6025 Papaver somniferum HOM05D001846 ORTHO05D005785 2.1e-30 137.5 295 33.9
Eucgr.J00759 Eucalyptus grandis HOM05D001846 ORTHO05D005785 2.8e-30 137.1 354 31.9
Sabra16G0155900 Salix brachista HOM05D001846 ORTHO05D005785 3.6e-30 136.7 357 31.4
CAN.G71.16 Capsicum annuum HOM05D001846 ORTHO05D005785 6.2e-30 136.0 274 33.9
SGA_v2.0_scaffold8G04581 Striga asiatica HOM05D001846 ORTHO05D005785 8.0e-30 135.6 317 32.8
Actinidia06915 Actinidia chinensis HOM05D001846 ORTHO05D005785 1.4e-29 134.8 350 32.3
Haze_23151 Corylus avellana HOM05D001846 ORTHO05D005785 1.8e-29 134.4 288 34.7
Thecc.09G235700 Theobroma cacao HOM05D001846 ORTHO05D005785 1.8e-29 134.4 403 29.5
Thecc.09G236100 Theobroma cacao HOM05D001846 ORTHO05D005785 1.8e-29 134.4 403 29.5
AUR62019315 Chenopodium quinoa HOM05D001846 ORTHO05D005785 2.3e-29 134.0 292 34.2
Sabra09G0038200 Salix brachista HOM05D001846 ORTHO05D005785 2.3e-29 134.0 333 33.9
Aqoxy2G00165 Aquilegia oxysepala HOM05D001846 ORTHO05D005785 4.0e-29 133.3 275 37.1
Gohir.D13G220500 Gossypium hirsutum HOM05D001846 ORTHO05D005785 6.8e-29 132.5 391 30.4
Cc01_g04530 Coffea canephora HOM05D001846 ORTHO05D005785 1.2e-28 131.7 268 36.2
Sc16g0011440 Simmondsia chinensis HOM05D001846 ORTHO05D005785 1.2e-28 131.7 400 29.8
Potri.001G256700 Populus trichocarpa HOM05D001846 ORTHO05D005785 2.0e-28 131.0 338 32.2
PGR119G1478 Punica granatum HOM05D001846 ORTHO05D005785 4.4e-28 129.8 402 30.1
MD11G1191400 Malus domestica HOM05D001846 ORTHO05D005785 1.3e-27 128.3 364 31.9
Nitab4.5_0002741g0070 Nicotiana tabacum HOM05D001846 ORTHO05D005785 1.7e-27 127.9 270 35.6
Gorai.013G251400 Gossypium raimondii HOM05D001846 ORTHO05D005785 2.9e-27 127.1 422 28.9
AUR62000135 Chenopodium quinoa HOM05D001846 ORTHO05D005785 4.9e-27 126.3 290 34.5
Lj1A326G19 Lonicera japonica HOM05D001846 ORTHO05D005785 4.9e-27 126.3 374 30.5
Duzib150G0388 Durio zibethinus HOM05D001846 ORTHO05D005785 1.4e-26 124.8 275 33.5
CANSAT54G0460 Cannabis sativa HOM05D001846 ORTHO05D005785 1.9e-26 124.4 399 28.8
FAN21G3148 Fragaria x ananassa HOM05D001846 ORTHO05D005785 1.9e-26 124.4 318 31.8
Actinidia16341 Actinidia chinensis HOM05D001846 ORTHO05D005785 2.4e-26 124.0 379 29.0
Cfa009785 Carpinus fangiana HOM05D001846 ORTHO05D005785 3.2e-26 123.6 286 33.2
RcHm_v2.0_Chr5g0052391 Rosa chinensis HOM05D001846 ORTHO05D005785 5.4e-26 122.9 278 33.1
MSTRG.17597 Avicennia marina HOM05D001846 ORTHO05D005785 7.0e-26 122.5 291 34.4
Migut.D00610 Erythranthe guttata HOM05D001846 ORTHO05D005785 7.0e-26 122.5 318 31.8
TWI60G1588 Tripterygium wilfordii HOM05D001846 ORTHO05D005785 7.0e-26 122.5 284 33.8
Lsat_1_v5_gn_6_25301 Lactuca sativa HOM05D001846 ORTHO05D005785 9.2e-26 122.1 304 31.2
FvH4_3g28690 Fragaria vesca HOM05D001846 ORTHO05D005785 1.6e-25 121.3 311 32.2
Prupe.4G251400 Prunus persica HOM05D001846 ORTHO05D005785 1.6e-25 121.3 355 31.0
DCAR_023761 Daucus carota HOM05D001846 ORTHO05D005785 2.0e-25 120.9 278 32.4
ECA233G5307 Erigeron canadensis HOM05D001846 ORTHO05D005785 2.0e-25 120.9 338 29.6
Os03g0216900 Oryza sativa ssp. japonica HOM05D001846 ORTHO05D005785 2.0e-25 120.9 307 31.9
arahy.Tifrunner.gnm1.ann1.8PYD8T Arachis hypogaea HOM05D001846 ORTHO05D005785 4.6e-25 119.8 301 32.9
Hma1.2p1_1313F.1_g274970 Hydrangea macrophylla HOM05D001846 ORTHO05D005785 6.0e-25 119.4 300 33.0
MD03G1173500 Malus domestica HOM05D001846 ORTHO05D005785 6.0e-25 119.4 306 31.4
arahy.Tifrunner.gnm1.ann1.563I02 Arachis hypogaea HOM05D001846 ORTHO05D005785 1.3e-24 118.2 273 32.2
Lalb_Chr19g0139851 Lupinus albus HOM05D001846 ORTHO05D005785 1.3e-24 118.2 279 31.9
MBI04_g43760_MAGBIO Magnolia biondii HOM05D001846 ORTHO05D005785 1.7e-24 117.9 267 36.7
Duzib168G1640 Durio zibethinus HOM05D001846 ORTHO05D005785 2.3e-24 117.5 366 29.0
Lj3g0008415 Lotus japonicus HOM05D001846 ORTHO05D005785 2.3e-24 117.5 298 30.5
Lj3g0026618 Lotus japonicus HOM05D001846 ORTHO05D005785 2.3e-24 117.5 298 30.5
Ah.06g194060 Amaranthus hybridus HOM05D001846 ORTHO05D005785 3.9e-24 116.7 394 30.7
MSTRG.12465 Avicennia marina HOM05D001846 ORTHO05D005785 5.0e-24 116.3 283 34.3
Gohir.D09G110300 Gossypium hirsutum HOM05D001846 ORTHO05D005785 1.1e-23 115.2 393 29.0
FAN25G3740 Fragaria x ananassa HOM05D001846 ORTHO05D005785 1.5e-23 114.8 315 31.7
SalBow1G1572 Salvia bowleyana HOM05D001846 ORTHO05D005785 2.8e-22 110.5 382 28.5
Gorai.006G127900 Gossypium raimondii HOM05D001846 ORTHO05D005785 3.6e-22 110.2 285 31.2
Nitab4.5_0007154g0020 Nicotiana tabacum HOM05D001846 ORTHO05D005785 3.6e-22 110.2 222 34.7
EL10Ac4g10235 Beta vulgaris HOM05D001846 ORTHO05D005785 6.2e-22 109.4 281 30.6
COL.COLO4_06126 Corchorus olitorius HOM05D001846 ORTHO05D005785 1.4e-21 108.2 265 32.1
FAN16G0902 Fragaria x ananassa HOM05D001846 ORTHO05D005785 5.2e-21 106.3 412 26.7
Psat7g170880 Pisum sativum HOM05D001846 ORTHO05D005785 6.8e-21 105.9 370 27.8
FAN11G2083 Fragaria x ananassa HOM05D001846 ORTHO05D005785 8.9e-21 105.5 318 29.2
Oeu016678.1 Olea europaea HOM05D001846 ORTHO05D005785 1.2e-20 105.1 329 28.6
Hund22024 Selenicereus undatus HOM05D001846 ORTHO05D005785 3.4e-20 103.6 293 30.0
Ca_18965_v3 Cicer arietinum L. HOM05D001846 ORTHO05D005785 4.4e-20 103.2 279 31.5
Medtr4g077160 Medicago truncatula HOM05D001846 ORTHO05D005785 9.8e-20 102.1 260 32.3
CsaV3_6G039320 Cucumis sativus L. HOM05D001846 ORTHO05D005785 1.3e-19 101.7 261 31.8
Peaxi162Scf00004g02629 Petunia axillaris HOM05D001846 ORTHO05D005785 1.3e-19 101.7 221 32.1
THA.LOC104811173 Tarenaya hassleriana HOM05D001846 ORTHO05D005785 2.2e-19 100.9 377 26.3
Oeu026419.1 Olea europaea HOM05D001846 ORTHO05D005785 6.4e-19 99.4 255 33.3
ClCG02G023130 Citrullus lanatus HOM05D001846 ORTHO05D005785 1.4e-18 98.2 266 30.1
MELO3C014586.2 Cucumis melo HOM05D001846 ORTHO05D005785 1.9e-18 97.8 260 31.5
CDE05G3609 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 5.4e-18 96.3 151 39.1
Sed0016770 Sechium edule HOM05D001846 ORTHO05D005785 1.2e-17 95.1 270 29.6
Carub.0001s4028 Capsella rubella HOM05D001846 ORTHO05D005785 6.0e-17 92.8 272 31.6
SEGI_01920 Sequoiadendron giganteum HOM05D001846 ORTHO05D005785 7.8e-17 92.4 339 25.4
THA.LOC104817913 Tarenaya hassleriana HOM05D001846 ORTHO05D005785 1.7e-16 91.3 295 28.1
AT1G51405 Arabidopsis thaliana HOM05D001846 ORTHO05D005785 3.3e-15 87.0 271 31.7
ATR0332G095 Amborella trichopoda HOM05D001846 ORTHO05D005785 7.3e-15 85.9 382 26.2
Sp1g38080 Schrenkiella parvula HOM05D001846 ORTHO05D005785 4.7e-14 83.2 241 31.5
MBI04_g45701_MAGBIO Magnolia biondii HOM05D001846 ORTHO05D005785 1.8e-13 81.3 236 31.8
MSTRG.18433 Avicennia marina HOM05D001846 ORTHO05D005785 6.8e-13 79.3 160 36.2
FAN25G3220 Fragaria x ananassa HOM05D001846 ORTHO05D005785 2.6e-12 77.4 179 34.6
MSTRG.21370 Avicennia marina HOM05D001846 ORTHO05D005785 3.4e-12 77.0 106 38.7
vmacro04149 Vaccinium macrocarpon HOM05D001846 ORTHO05D005785 5.8e-12 76.3 83 42.2
BraA06t23456Z Brassica rapa HOM05D001846 ORTHO05D005785 9.9e-12 75.5 316 26.6
Aa31LG10G3580 Aethionema arabicum HOM05D000089 ORTHO05D005785 1.7e-11 74.7 232 30.2
BcaB07g33587 Brassica carinata HOM05D001846 ORTHO05D005785 3.8e-11 73.6 244 29.5
CDE05G1816 Ceratophyllum demersum HOM05D001846 ORTHO05D005785 3.8e-11 73.6 166 30.1
BcaC01g01249 Brassica carinata HOM05D001846 ORTHO05D005785 4.9e-11 73.2 240 27.5
C03p89760 Brassica napus HOM05D001846 ORTHO05D005785 4.9e-11 73.2 240 27.5
Zm00001eb393780 Zea mays HOM05D001846 ORTHO05D005785 4.9e-11 73.2 171 28.7
PGSC0003DMG400010305 Solanum tuberosum HOM05D001846 ORTHO05D005785 8.4e-11 72.4 124 37.1
BolC3t21298H Brassica oleracea HOM05D001846 ORTHO05D005785 1.4e-10 71.6 240 26.7
Thhalv10011423m.g Eutrema salsugineum HOM05D001846 ORTHO05D005785 2.4e-10 70.9 234 29.5
AL1G59260 Arabidopsis lyrata HOM05D001846 ORTHO05D005785 3.2e-10 70.5 225 30.7
BcaC08g43310 Brassica carinata HOM05D001846 ORTHO05D005785 4.1e-10 70.1 247 27.9
C06p06570 Brassica napus HOM05D001846 ORTHO05D005785 4.1e-10 70.1 247 27.9
BolC6t35770H Brassica oleracea HOM05D001846 ORTHO05D005785 4.1e-10 70.1 247 27.9
CARHR041560 Cardamine hirsuta HOM05D001846 ORTHO05D005785 7.1e-10 69.3 230 28.3
HanXRQChr02g0051491 Helianthus annuus HOM05D001846 ORTHO05D005785 2.1e-09 67.8 325 24.3
BcaB04g17234 Brassica carinata HOM05D001846 ORTHO05D005785 4.6e-09 66.6 224 28.1
Gohir.A09G113600 Gossypium hirsutum HOM05D001846 ORTHO05D005785 4.6e-09 66.6 139 34.5
Rhsim13G0220400 Rhododendron simsii HOM05D001846 ORTHO05D005785 1.0e-08 65.5 173 28.3
Actinidia26798 Actinidia chinensis HOM05D001846 ORTHO05D005785 2.3e-08 64.3 56 50.0
SGA_v2.0_scaffold247G44890 Striga asiatica HOM05D001846 ORTHO05D005785 2.3e-08 64.3 56 50.0
BraA08t32338Z Brassica rapa HOM05D001846 ORTHO05D005785 3.0e-08 63.9 224 26.8
FAN25G3801 Fragaria x ananassa HOM05D001846 ORTHO05D005785 3.0e-08 63.9 351 24.5
A06p02500 Brassica napus HOM05D001846 ORTHO05D005785 6.6e-08 62.8 226 26.5
A08p03060 Brassica napus HOM05D001846 ORTHO05D005785 3.3e-07 60.5 216 27.3
Nn6g35051 Nelumbo nucifera HOM05D001846 ORTHO05D005785 7.3e-07 59.3 110 37.3


User provided reference genes

Program Settings