Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_007638 Vanilla planifolia HOM05D001741 ORTHO05D002196 3.4e-43 177.9 91 100.0
HPP92_007637 Vanilla planifolia HOM05D001741 ORTHO05D002196 1.5e-14 82.8 63 61.9
Thecc.02G353700 Theobroma cacao HOM05D001741 ORTHO05D002196 9.7e-14 80.1 62 61.3
Gohir.A13G071600 Gossypium hirsutum HOM05D001741 ORTHO05D002196 1.7e-13 79.3 62 62.9
Gorai.013G082400 Gossypium raimondii HOM05D001741 ORTHO05D002196 1.7e-13 79.3 62 62.9
Cc11_g13370 Coffea canephora HOM05D001741 ORTHO05D002196 2.8e-13 78.6 69 56.5
TAR371G0100 Trochodendron aralioides HOM05D001741 ORTHO05D002196 2.8e-13 78.6 64 54.7
PSO832G3125 Papaver somniferum HOM05D001741 ORTHO05D002196 3.7e-13 78.2 66 54.5
CSS0014423 Camellia sinensis var. sinensis HOM05D001741 ORTHO05D002196 6.3e-13 77.4 63 55.6
Duzib251G0381 Durio zibethinus HOM05D001741 ORTHO05D002196 6.3e-13 77.4 62 59.7
Lj3A1041T82 Lonicera japonica HOM05D001741 ORTHO05D002196 6.3e-13 77.4 62 58.1
Sabra17G0045600 Salix brachista HOM05D001741 ORTHO05D002196 6.3e-13 77.4 58 60.3
QL03p065432 Quercus lobata HOM05D001741 ORTHO05D002196 1.1e-12 76.6 70 52.9
GSVIVG01020059001 Vitis vinifera HOM05D001741 ORTHO05D002196 1.1e-12 76.6 63 57.1
CAN.G38.23 Capsicum annuum HOM05D001741 ORTHO05D002196 1.4e-12 76.3 63 55.6
MELO3C012073.2 Cucumis melo HOM05D001741 ORTHO05D002196 1.4e-12 76.3 65 52.3
Sed0010202 Sechium edule HOM05D001741 ORTHO05D002196 1.4e-12 76.3 63 54.0
Sopen01g006320 Solanum pennellii HOM05D001741 ORTHO05D002196 1.4e-12 76.3 62 56.5
PGSC0003DMG400000861 Solanum tuberosum HOM05D001741 ORTHO05D002196 1.4e-12 76.3 62 56.5
Actinidia31187 Actinidia chinensis HOM05D001741 ORTHO05D002196 1.8e-12 75.9 63 55.6
MD13G1077700 Malus domestica HOM05D001741 ORTHO05D002196 1.8e-12 75.9 62 58.1
Zm00001eb160610 Zea mays HOM05D001741 ORTHO05D002196 1.8e-12 75.9 63 55.6
Duzib248G0957 Durio zibethinus HOM05D001741 ORTHO05D002196 2.4e-12 75.5 62 59.7
CsaV3_5G032420 Cucumis sativus L. HOM05D001741 ORTHO05D002196 3.1e-12 75.1 65 50.8
Nitab4.5_0002752g0140 Nicotiana tabacum HOM05D001741 ORTHO05D002196 3.1e-12 75.1 62 54.8
Dinv34211 Davidia involucrata HOM05D001741 ORTHO05D000654 4.1e-12 74.7 63 54.0
Atru.chr11.1894 Acer truncatum HOM05D001741 ORTHO05D002196 5.3e-12 74.3 62 56.5
Aqoxy3G03306 Aquilegia oxysepala HOM05D001741 ORTHO05D002196 5.3e-12 74.3 63 52.4
Potri.017G053600 Populus trichocarpa HOM05D001741 ORTHO05D002196 5.3e-12 74.3 58 58.6
Rhsim12G0130600 Rhododendron simsii HOM05D001741 ORTHO05D002196 6.9e-12 73.9 63 54.0
Haze_12052 Corylus avellana HOM05D001741 ORTHO05D002196 9.1e-12 73.6 70 52.9
Nn4g23072 Nelumbo nucifera HOM05D001741 ORTHO05D002196 9.1e-12 73.6 63 52.4
ClCG05G024530 Citrullus lanatus HOM05D001741 ORTHO05D002196 1.2e-11 73.2 62 53.2
Solyc01g010700.3 Solanum lycopersicum HOM05D001741 ORTHO05D002196 1.2e-11 73.2 62 54.8
FAN22G2407 Fragaria x ananassa HOM05D001741 ORTHO05D002196 1.5e-11 72.8 62 54.8
MD13G1077800 Malus domestica HOM05D001741 ORTHO05D002196 1.5e-11 72.8 58 56.9
Nitab4.5_0000141g0350 Nicotiana tabacum HOM05D001741 ORTHO05D002196 1.5e-11 72.8 62 54.8
Phvul.002G089600 Phaseolus vulgaris HOM05D001741 ORTHO05D002196 1.5e-11 72.8 63 50.8
Sc04g0008400 Simmondsia chinensis HOM05D001741 ORTHO05D002196 1.5e-11 72.8 60 56.7
TPR.G13768 Trifolium pratense HOM05D001741 ORTHO05D002196 1.5e-11 72.8 64 51.6
COL.COLO4_23038 Corchorus olitorius HOM05D001741 ORTHO05D002196 2.0e-11 72.4 58 60.3
HanXRQChr17g0544801 Helianthus annuus HOM05D001741 ORTHO05D002196 2.0e-11 72.4 63 52.4
PGR119G0661 Punica granatum HOM05D001741 ORTHO05D002196 2.0e-11 72.4 63 50.8
EL10Ac6g13161 Beta vulgaris HOM05D001741 ORTHO05D002196 2.6e-11 72.0 63 52.4
Ciclev10033729m.g Citrus clementina HOM05D001741 ORTHO05D002196 2.6e-11 72.0 62 56.5
Nitab4.5_0006585g0020 Nicotiana tabacum HOM05D001741 ORTHO05D002196 2.6e-11 72.0 62 53.2
AL2G29070 Arabidopsis lyrata HOM05D001741 ORTHO05D002196 3.4e-11 71.6 62 50.0
Nn3g17147 Nelumbo nucifera HOM05D001741 ORTHO05D002196 3.4e-11 71.6 63 55.6
BcaB03g14759 Brassica carinata HOM05D001741 ORTHO05D002196 4.5e-11 71.2 58 53.4
Carub.0002s1650 Capsella rubella HOM05D001741 ORTHO05D002196 4.5e-11 71.2 62 50.0
Glyma.01G043400 Glycine max HOM05D001741 ORTHO05D002196 4.5e-11 71.2 63 50.8
Glyma.02G020200 Glycine max HOM05D001741 ORTHO05D002196 4.5e-11 71.2 63 49.2
Lsat_1_v5_gn_3_51321 Lactuca sativa HOM05D001741 ORTHO05D002196 4.5e-11 71.2 59 55.9
Medtr5g038570 Medicago truncatula HOM05D001741 ORTHO05D002196 4.5e-11 71.2 64 50.0
SGA_v2.0_scaffold63G21667 Striga asiatica HOM05D001741 ORTHO05D002196 4.5e-11 71.2 63 50.8
Lalb_Chr17g0340421 Lupinus albus HOM05D001741 ORTHO05D002196 5.9e-11 70.9 63 50.8
Peaxi162Scf00026g02513 Petunia axillaris HOM05D001741 ORTHO05D002196 5.9e-11 70.9 62 51.6
Cfa009018 Carpinus fangiana HOM05D001741 ORTHO05D002196 7.7e-11 70.5 63 52.4
ECA246G1643 Erigeron canadensis HOM05D001741 ORTHO05D002196 7.7e-11 70.5 62 51.6
FvH4_4g31760 Fragaria vesca HOM05D001741 ORTHO05D002196 7.7e-11 70.5 62 53.2
FAN12G1673 Fragaria x ananassa HOM05D001741 ORTHO05D002196 7.7e-11 70.5 62 53.2
FAN17G1528 Fragaria x ananassa HOM05D001741 ORTHO05D002196 7.7e-11 70.5 62 53.2
vmacro16332 Vaccinium macrocarpon HOM05D001741 ORTHO05D002196 7.7e-11 70.5 63 50.8
Lj2g0016570 Lotus japonicus HOM05D001741 ORTHO05D002196 1.0e-10 70.1 64 50.0
RcHm_v2.0_Chr4g0440361 Rosa chinensis HOM05D001741 ORTHO05D002196 1.0e-10 70.1 62 53.2
AUR62028824 Chenopodium quinoa HOM05D001741 ORTHO05D002196 1.3e-10 69.7 63 52.4
Eucgr.G02534 Eucalyptus grandis HOM05D001741 ORTHO05D002196 1.3e-10 69.7 63 49.2
AUR62005737 Chenopodium quinoa HOM05D001741 ORTHO05D002196 1.7e-10 69.3 63 50.8
Manes.01G189100 Manihot esculenta HOM05D001741 ORTHO05D002196 1.7e-10 69.3 65 47.7
Oeu000634.1 Olea europaea HOM05D001741 ORTHO05D002196 1.7e-10 69.3 63 47.6
Thhalv10018543m.g Eutrema salsugineum HOM05D001741 ORTHO05D002196 2.2e-10 68.9 62 50.0
Nitab4.5_0000879g0060 Nicotiana tabacum HOM05D001741 ORTHO05D002196 2.2e-10 68.9 57 54.4
Lalb_Chr04g0256291 Lupinus albus HOM05D001741 ORTHO05D002196 2.9e-10 68.6 58 53.4
AT1G69800 Arabidopsis thaliana HOM05D001741 ORTHO05D002196 3.8e-10 68.2 62 48.4
C06p43610 Brassica napus HOM05D001741 ORTHO05D002196 3.8e-10 68.2 62 46.8
BolC6t39433H Brassica oleracea HOM05D001741 ORTHO05D002196 3.8e-10 68.2 62 46.8
Ca_04749_v3 Cicer arietinum L. HOM05D001741 ORTHO05D002196 3.8e-10 68.2 64 48.4
MBI01_g12908_MAGBIO Magnolia biondii HOM05D001741 ORTHO05D002196 3.8e-10 68.2 65 47.7
Psat2g120160 Pisum sativum HOM05D001741 ORTHO05D002196 3.8e-10 68.2 59 50.8
THA.LOC104822927 Tarenaya hassleriana HOM05D001741 ORTHO05D002196 3.8e-10 68.2 62 50.0
A07p36250 Brassica napus HOM05D001741 ORTHO05D002196 5.0e-10 67.8 62 48.4
BraA07t31197Z Brassica rapa HOM05D001741 ORTHO05D002196 5.0e-10 67.8 62 48.4
RcHm_v2.0_Chr4g0440371 Rosa chinensis HOM05D001741 ORTHO05D002196 5.0e-10 67.8 63 49.2
SalBow8G5527 Salvia bowleyana HOM05D001741 ORTHO05D002196 6.5e-10 67.4 63 49.2
TWI75G0813 Tripterygium wilfordii HOM05D001741 ORTHO05D002196 6.5e-10 67.4 63 50.8
BcaC03g15132 Brassica carinata HOM05D001741 ORTHO05D002196 8.5e-10 67.0 64 46.9
C02p26950 Brassica napus HOM05D001741 ORTHO05D002196 8.5e-10 67.0 64 46.9
BolC2t08757H Brassica oleracea HOM05D001741 ORTHO05D002196 8.5e-10 67.0 64 46.9
A02p16170 Brassica napus HOM05D001741 ORTHO05D002196 1.1e-09 66.6 64 46.9
BraA02t06676Z Brassica rapa HOM05D001741 ORTHO05D002196 1.1e-09 66.6 64 46.9
CDE06G0312 Ceratophyllum demersum HOM05D001741 ORTHO05D002196 1.1e-09 66.6 63 49.2
ATR1120G113 Amborella trichopoda HOM05D001741 ORTHO05D002196 1.4e-09 66.2 66 50.0
BcaB05g24489 Brassica carinata HOM05D001741 ORTHO05D002196 1.4e-09 66.2 62 48.4
BcaC08g46427 Brassica carinata HOM05D001741 ORTHO05D002196 1.4e-09 66.2 62 45.2
CSS0002275 Camellia sinensis var. sinensis HOM05D001741 ORTHO05D002196 1.4e-09 66.2 61 50.8
CSS0017018 Camellia sinensis var. sinensis HOM05D001741 ORTHO05D002196 1.4e-09 66.2 61 50.8
Aa31LG4G11010 Aethionema arabicum HOM05D001741 ORTHO05D002196 1.9e-09 65.9 58 50.0
arahy.Tifrunner.gnm1.ann1.075A5E Arachis hypogaea HOM05D001741 ORTHO05D002196 1.9e-09 65.9 62 51.6
arahy.Tifrunner.gnm1.ann1.78AWB5 Arachis hypogaea HOM05D001741 ORTHO05D002196 1.9e-09 65.9 62 51.6
CiPaw.05G138800 Carya illinoinensis HOM05D001741 ORTHO05D002196 1.9e-09 65.9 63 50.8
DCAR_027392 Daucus carota HOM05D001741 ORTHO05D002196 1.9e-09 65.9 62 51.6
Sp5g24920 Schrenkiella parvula HOM05D001741 ORTHO05D002196 1.9e-09 65.9 62 46.8
Psat4g106720 Pisum sativum HOM05D001741 ORTHO05D002196 2.5e-09 65.5 63 46.0
FvH4_4g31780 Fragaria vesca HOM05D001741 ORTHO05D002196 3.2e-09 65.1 63 46.0
FAN12G0099 Fragaria x ananassa HOM05D001741 ORTHO05D002196 3.2e-09 65.1 63 46.0
Peaxi162Scf00209g00231 Petunia axillaris HOM05D001741 ORTHO05D002196 3.2e-09 65.1 51 58.8
Prupe.1G269400 Prunus persica HOM05D001741 ORTHO05D002196 3.2e-09 65.1 62 50.0
MSTRG.2356 Avicennia marina HOM05D001741 ORTHO05D002196 5.5e-09 64.3 63 44.4
MSTRG.13404 Avicennia marina HOM05D001741 ORTHO05D002196 9.4e-09 63.5 63 46.0
DCAR_031047 Daucus carota HOM05D001741 ORTHO05D002196 1.6e-08 62.8 62 48.4
Migut.E00110 Erythranthe guttata HOM05D001741 ORTHO05D002196 1.6e-08 62.8 63 44.4
DCAR_007137 Daucus carota HOM05D001741 ORTHO05D002196 2.7e-08 62.0 62 46.8
SEGI_38493 Sequoiadendron giganteum HOM05D001741 ORTHO05D002196 2.7e-08 62.0 64 46.9
unitig_8.g3949 Utricularia gibba HOM05D001741 ORTHO05D002196 4.7e-08 61.2 57 45.6
FAN07G0918 Fragaria x ananassa HOM05D001741 ORTHO05D002196 6.1e-08 60.8 63 46.0
Cpa.g.sc183.19 Carica papaya HOM05D001741 ORTHO05D002196 1.4e-07 59.7 63 41.3
Rhsim12G0174100 Rhododendron simsii HOM05D001741 ORTHO05D002196 5.1e-07 57.8 61 39.3
AagrBONN_evm.TU.Sc2ySwM_344.4530 Anthoceros agrestis HOM05D001741 ORTHO05D002196 6.7e-07 57.4 64 40.6
TWI39G0196 Tripterygium wilfordii HOM05D001741 ORTHO05D002196 6.7e-07 57.4 60 41.7
Gohir.A11G036200 Gossypium hirsutum HOM05D001741 ORTHO05D002196 1.1e-06 56.6 62 38.7
Gohir.D11G039700 Gossypium hirsutum HOM05D001741 ORTHO05D002196 1.1e-06 56.6 62 38.7
Gorai.007G042700 Gossypium raimondii HOM05D001741 ORTHO05D002196 1.1e-06 56.6 62 38.7
CSS0031290 Camellia sinensis var. sinensis HOM05D001741 ORTHO05D002196 1.5e-06 56.2 61 37.7
COL.COLO4_28099 Corchorus olitorius HOM05D001741 ORTHO05D002196 1.5e-06 56.2 62 35.5
Sopen03g030440 Solanum pennellii HOM05D001741 ORTHO05D002196 1.5e-06 56.2 60 36.7
PGSC0003DMG400015241 Solanum tuberosum HOM05D001741 ORTHO05D002196 2.6e-06 55.5 60 36.7
Actinidia25580 Actinidia chinensis HOM05D001741 ORTHO05D002196 3.3e-06 55.1 61 39.3
unitig_22.g5542 Utricularia gibba HOM05D001741 ORTHO05D002196 3.3e-06 55.1 66 42.4
Dinv11166 Davidia involucrata HOM05D001741 ORTHO05D002196 4.4e-06 54.7 61 39.3
SGA_v2.0_scaffold215G42330 Striga asiatica HOM05D001741 ORTHO05D002196 4.4e-06 54.7 62 35.5
MSTRG.11280 Avicennia marina HOM05D001741 ORTHO05D002196 5.7e-06 54.3 61 37.7
BcaC09g49874 Brassica carinata HOM05D001741 ORTHO05D002196 5.7e-06 54.3 60 41.7
A01p25670 Brassica napus HOM05D001741 ORTHO05D002196 5.7e-06 54.3 60 41.7
C01p32240 Brassica napus HOM05D001741 ORTHO05D002196 5.7e-06 54.3 60 41.7
BolC1t03130H Brassica oleracea HOM05D001741 ORTHO05D002196 5.7e-06 54.3 60 41.7
BraA01t02448Z Brassica rapa HOM05D001741 ORTHO05D002196 5.7e-06 54.3 60 41.7
CARHR157330 Cardamine hirsuta HOM05D001741 ORTHO05D002196 5.7e-06 54.3 60 41.7
CiPaw.11G008300 Carya illinoinensis HOM05D001741 ORTHO05D002196 5.7e-06 54.3 61 39.3
Glyma.05G047700 Glycine max HOM05D001741 ORTHO05D002196 5.7e-06 54.3 63 36.5
Glyma.17G129600 Glycine max HOM05D001741 ORTHO05D002196 5.7e-06 54.3 63 36.5
MD06G1142700 Malus domestica HOM05D001741 ORTHO05D002196 5.7e-06 54.3 61 37.7
RcHm_v2.0_Chr7g0190321 Rosa chinensis HOM05D001741 ORTHO05D002196 5.7e-06 54.3 61 39.3
Thecc.03G128100 Theobroma cacao HOM05D001741 ORTHO05D002196 5.7e-06 54.3 62 37.1
TWI14G0083 Tripterygium wilfordii HOM05D001741 ORTHO05D002196 5.7e-06 54.3 60 38.3
TAR374G0301 Trochodendron aralioides HOM05D001741 ORTHO05D002196 5.7e-06 54.3 61 39.3
vmacro19201 Vaccinium macrocarpon HOM05D001741 ORTHO05D002196 5.7e-06 54.3 61 36.1
GSVIVG01008534001 Vitis vinifera HOM05D001741 ORTHO05D002196 5.7e-06 54.3 61 42.6
AL5G27980 Arabidopsis lyrata HOM05D001741 ORTHO05D002196 7.4e-06 53.9 60 41.7
AT3G48530 Arabidopsis thaliana HOM05D001741 ORTHO05D002196 7.4e-06 53.9 60 41.7
BcaB01g00800 Brassica carinata HOM05D001741 ORTHO05D002196 7.4e-06 53.9 60 41.7
BcaB05g23010 Brassica carinata HOM05D001741 ORTHO05D002196 7.4e-06 53.9 60 41.7
A06p19130 Brassica napus HOM05D001741 ORTHO05D002196 7.4e-06 53.9 60 41.7
BraA06t24997Z Brassica rapa HOM05D001741 ORTHO05D002196 7.4e-06 53.9 60 41.7
Carub.0005s1472 Capsella rubella HOM05D001741 ORTHO05D002196 7.4e-06 53.9 60 41.7
CAN.G352.18 Capsicum annuum HOM05D001741 ORTHO05D002196 7.4e-06 53.9 60 36.7
Pp3c16_13330 Physcomitrium patens HOM05D001741 ORTHO05D002196 7.4e-06 53.9 56 48.2
Rhsim08G0189400 Rhododendron simsii HOM05D001741 ORTHO05D002196 7.4e-06 53.9 61 36.1
RhsimUnG0231700 Rhododendron simsii HOM05D001741 ORTHO05D002196 7.4e-06 53.9 61 36.1
Sp5g13450 Schrenkiella parvula HOM05D001741 ORTHO05D002196 7.4e-06 53.9 60 41.7
Solyc03g111310.3 Solanum lycopersicum HOM05D001741 ORTHO05D002196 7.4e-06 53.9 60 35.0
Aa31LG4G17150 Aethionema arabicum HOM05D001741 ORTHO05D002196 9.7e-06 53.5 60 41.7
CANSAT80G0140 Cannabis sativa HOM05D001741 ORTHO05D002196 9.7e-06 53.5 61 37.7
CANSAT80G1307 Cannabis sativa HOM05D001741 ORTHO05D002196 9.7e-06 53.5 61 37.7
CDE05G1334 Ceratophyllum demersum HOM05D001741 ORTHO05D002196 9.7e-06 53.5 61 37.7
Mapoly0009s0230 Marchantia polymorpha HOM05D001741 ORTHO05D002196 9.7e-06 53.5 64 35.9


User provided reference genes

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