Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_007621 Vanilla planifolia HOM05D007041 ORTHO05D008036 1.6e-56 222.6 124 100.0
Rhsim07G0006100 Rhododendron simsii HOM05D000337 ORTHO05D000297 1.5e-09 66.6 88 45.5
vmacro22517 Vaccinium macrocarpon HOM05D007041 ORTHO05D008036 2.0e-09 66.2 92 42.4
Nn1g01816 Nelumbo nucifera HOM05D007041 ORTHO05D008036 2.6e-09 65.9 44 65.9
CiPaw.01G073300 Carya illinoinensis HOM05D007041 ORTHO05D008036 9.8e-09 63.9 50 60.0
Manes.02G012350 Manihot esculenta HOM05D007041 ORTHO05D008036 2.8e-08 62.4 53 58.5
CiPaw.12G084900 Carya illinoinensis HOM05D007041 ORTHO05D008036 6.3e-08 61.2 110 34.5
Thecc.03G293400 Theobroma cacao HOM05D007041 ORTHO05D008036 6.3e-08 61.2 61 49.2
CSS0039531 Camellia sinensis var. sinensis HOM05D007041 ORTHO05D008036 1.1e-07 60.5 89 36.0
Zm00001eb310140 Zea mays HOM05D007041 ORTHO05D008036 1.1e-07 60.5 48 58.3
Zm00001eb441140 Zea mays HOM05D007041 ORTHO05D008036 1.1e-07 60.5 48 58.3
COL.COLO4_06320 Corchorus olitorius HOM05D007041 ORTHO05D008036 1.8e-07 59.7 58 56.9
MD07G1146000 Malus domestica HOM05D007041 ORTHO05D008036 2.4e-07 59.3 36 63.9
Peaxi162Scf00843g00001 Petunia axillaris HOM05D007041 ORTHO05D008036 3.1e-07 58.9 73 43.8
Prupe.5G115500 Prunus persica HOM05D007041 ORTHO05D008036 3.1e-07 58.9 32 75.0
QL02p031389 Quercus lobata HOM05D007041 ORTHO05D008036 3.1e-07 58.9 69 43.5
Rhsim01G0170500 Rhododendron simsii HOM05D007041 ORTHO05D008036 3.1e-07 58.9 83 44.6
TAR636G2915 Trochodendron aralioides HOM05D007041 ORTHO05D008036 3.1e-07 58.9 43 62.8
Gohir.D08G147100 Gossypium hirsutum HOM05D007041 ORTHO05D008036 4.1e-07 58.5 31 71.0
Gorai.004G152600 Gossypium raimondii HOM05D007041 ORTHO05D008036 4.1e-07 58.5 31 71.0
Rhsim01G0170200 Rhododendron simsii HOM05D007041 ORTHO05D008036 4.1e-07 58.5 85 40.0
vmacro22516 Vaccinium macrocarpon HOM05D007041 ORTHO05D008036 4.1e-07 58.5 92 39.1
CiPaw.02G039100 Carya illinoinensis HOM05D007041 ORTHO05D008036 5.4e-07 58.2 65 44.6
ECA236G3839 Erigeron canadensis HOM05D007041 ORTHO05D008036 5.4e-07 58.2 53 50.9
Lsat_1_v5_gn_7_2180 Lactuca sativa HOM05D007041 ORTHO05D008036 5.4e-07 58.2 56 46.4
HPP92_005512 Vanilla planifolia HOM05D007041 ORTHO05D008036 5.4e-07 58.2 110 37.3
vmacro22515 Vaccinium macrocarpon HOM05D007041 ORTHO05D008036 9.2e-07 57.4 70 40.0
Sc01g0010130 Simmondsia chinensis HOM05D007041 ORTHO05D008036 1.2e-06 57.0 43 55.8
arahy.Tifrunner.gnm1.ann1.JU2T19 Arachis hypogaea HOM05D007041 ORTHO05D008036 1.6e-06 56.6 40 65.0
arahy.Tifrunner.gnm1.ann1.LKBY4F Arachis hypogaea HOM05D007041 ORTHO05D008036 1.6e-06 56.6 40 65.0
Glyma.16G026800 Glycine max HOM05D007041 ORTHO05D008036 1.6e-06 56.6 65 41.5
Prupe.2G184300 Prunus persica HOM05D007041 ORTHO05D008036 1.6e-06 56.6 56 50.0
CSS0019600 Camellia sinensis var. sinensis HOM05D007041 ORTHO05D008036 2.0e-06 56.2 29 75.9
CSS0049473 Camellia sinensis var. sinensis HOM05D007041 ORTHO05D008036 2.0e-06 56.2 29 75.9
Oeu007854.1 Olea europaea HOM05D007041 ORTHO05D008036 2.0e-06 56.2 52 50.0
RcHm_v2.0_Chr7g0195411 Rosa chinensis HOM05D017100 ORTHO05D008036 2.0e-06 56.2 53 52.8
A09p53730 Brassica napus HOM05D007041 ORTHO05D008036 2.7e-06 55.8 66 47.0
BraA09t40795Z Brassica rapa HOM05D007041 ORTHO05D008036 2.7e-06 55.8 66 47.0
Nn2g15118 Nelumbo nucifera HOM05D007041 ORTHO05D008036 2.7e-06 55.8 72 44.4
RcHm_v2.0_Chr1g0358991 Rosa chinensis HOM05D007041 ORTHO05D008036 2.7e-06 55.8 56 50.0
Oeu009948.1 Olea europaea HOM05D007041 ORTHO05D008036 3.5e-06 55.5 42 57.1
Actinidia28494 Actinidia chinensis HOM05D000017 ORTHO05D008036 4.5e-06 55.1 61 54.1
Glyma.07G057800 Glycine max HOM05D007041 ORTHO05D008036 4.5e-06 55.1 52 50.0
Gohir.A07G139300 Gossypium hirsutum HOM05D007041 ORTHO05D008036 4.5e-06 55.1 29 75.9
Gohir.A12G234950 Gossypium hirsutum HOM05D007041 ORTHO05D008036 4.5e-06 55.1 30 70.0
Gohir.D12G236050 Gossypium hirsutum HOM05D007041 ORTHO05D008036 4.5e-06 55.1 30 70.0
Gorai.008G252800 Gossypium raimondii HOM05D007041 ORTHO05D008036 4.5e-06 55.1 30 70.0
Manes.02G012400 Manihot esculenta HOM05D007041 ORTHO05D008036 4.5e-06 55.1 49 55.1
Nitab4.5_0007594g0010 Nicotiana tabacum HOM05D007041 ORTHO05D008036 4.5e-06 55.1 82 39.0
TAR629G2489 Trochodendron aralioides HOM05D007041 ORTHO05D008036 4.5e-06 55.1 35 68.6
CANSAT56G1227 Cannabis sativa HOM05D007041 ORTHO05D008036 5.9e-06 54.7 54 48.1
Carub.0005s2835 Capsella rubella HOM05D007041 ORTHO05D008036 7.7e-06 54.3 63 47.6
FAN10G2988 Fragaria x ananassa HOM05D007041 ORTHO05D008036 7.7e-06 54.3 51 54.9
Potri.003G137600 Populus trichocarpa HOM05D007041 ORTHO05D008036 7.7e-06 54.3 42 54.8


User provided reference genes

Program Settings